data_5WA # _chem_comp.id 5WA _chem_comp.name "(1R)-3-(2,4-diamino-6-methylpyrimidin-5-yl)-1-(3,4,5-trimethoxyphenyl)prop-2-yn-1-ol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H20 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(R)-2,4-diamino-5-(3-hydroxy-3-(3,4,5-trimethoxyphenyl)prop-1-ynyl)-6-methylpyrimidine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-09-22 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 344.365 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5WA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3JWF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5WA N1 N1 N 0 1 Y N N 21.741 41.944 -7.007 -4.239 -1.849 -0.334 N1 5WA 1 5WA C2 C2 C 0 1 Y N N 21.297 41.926 -5.744 -5.389 -1.209 -0.176 C2 5WA 2 5WA N3 N3 N 0 1 Y N N 22.059 42.405 -4.743 -5.440 0.080 0.123 N3 5WA 3 5WA C4 C4 C 0 1 Y N N 23.279 42.906 -4.987 -4.326 0.787 0.275 C4 5WA 4 5WA C5 C5 C 0 1 Y N N 23.768 42.924 -6.291 -3.084 0.141 0.115 C5 5WA 5 5WA C6 C6 C 0 1 Y N N 22.955 42.421 -7.310 -3.083 -1.219 -0.199 C6 5WA 6 5WA C1A C1A C 0 1 N N N 24.809 48.136 -9.382 3.324 -0.536 3.559 C1A 5WA 7 5WA C1B C1B C 0 1 N N N 30.885 44.864 -10.943 2.864 0.603 -3.492 C1B 5WA 8 5WA C1C C1C C 0 1 N N N 26.819 46.312 -13.205 4.470 -2.672 -0.496 C1C 5WA 9 5WA C1D C1D C 0 1 N N N 23.408 42.400 -8.778 -1.784 -1.960 -0.382 C1D 5WA 10 5WA N1E N1E N 0 1 N N N 20.086 41.432 -5.499 -6.572 -1.910 -0.327 N1E 5WA 11 5WA N1F N1F N 0 1 N N N 24.019 43.368 -3.983 -4.384 2.133 0.586 N1F 5WA 12 5WA O1G O1G O 0 1 N N N 27.867 45.380 -6.060 0.466 3.254 -0.395 O1G 5WA 13 5WA C1H C1H C 0 1 N N N 25.077 43.448 -6.569 -1.855 0.860 0.270 C1H 5WA 14 5WA C1I C1I C 0 1 N N N 26.200 43.899 -6.808 -0.849 1.450 0.397 C1I 5WA 15 5WA C1J C1J C 0 1 Y N N 26.555 46.044 -8.818 2.184 0.639 1.407 C1J 5WA 16 5WA C1K C1K C 0 1 Y N N 28.583 44.861 -9.368 2.029 1.020 -0.954 C1K 5WA 17 5WA O1N O1N O 0 1 N N N 25.590 47.564 -10.453 3.853 -0.824 2.263 O1N 5WA 18 5WA O1O O1O O 0 1 N N N 29.614 45.206 -11.526 3.550 -0.062 -2.429 O1O 5WA 19 5WA O1P O1P O 0 1 N N N 27.618 46.993 -12.209 4.771 -1.291 -0.290 O1P 5WA 20 5WA C1U C1U C 0 1 Y N N 27.559 45.140 -8.461 1.575 1.256 0.330 C1U 5WA 21 5WA C1V C1V C 0 1 Y N N 26.568 46.672 -10.073 3.256 -0.217 1.204 C1V 5WA 22 5WA C1W C1W C 0 1 Y N N 28.617 45.482 -10.625 3.104 0.170 -1.166 C1W 5WA 23 5WA C1X C1X C 0 1 Y N N 27.598 46.379 -10.981 3.719 -0.453 -0.086 C1X 5WA 24 5WA C1Y C1Y C 0 1 N N R 27.544 44.444 -7.086 0.414 2.190 0.557 C1Y 5WA 25 5WA H1A H1A H 0 1 N N N 24.064 48.829 -9.800 3.401 0.534 3.753 H1A 5WA 26 5WA H1AA H1AA H 0 0 N N N 24.295 47.333 -8.834 2.278 -0.838 3.600 H1AA 5WA 27 5WA H1AB H1AB H 0 0 N N N 25.473 48.682 -8.696 3.890 -1.083 4.313 H1AB 5WA 28 5WA H1B H1B H 0 1 N N N 31.613 44.662 -11.742 3.319 0.331 -4.444 H1B 5WA 29 5WA H1BA H1BA H 0 0 N N N 31.242 45.701 -10.325 1.816 0.303 -3.491 H1BA 5WA 30 5WA H1BB H1BB H 0 0 N N N 30.771 43.968 -10.316 2.933 1.681 -3.350 H1BB 5WA 31 5WA H1C H1C H 0 1 N N N 26.880 46.856 -14.159 3.836 -2.779 -1.376 H1C 5WA 32 5WA H1CA H1CA H 0 0 N N N 27.198 45.288 -13.341 5.395 -3.228 -0.646 H1CA 5WA 33 5WA H1CB H1CB H 0 0 N N N 25.771 46.274 -12.871 3.948 -3.065 0.377 H1CB 5WA 34 5WA H1D H1D H 0 1 N N N 22.612 41.967 -9.402 -1.479 -1.907 -1.428 H1D 5WA 35 5WA H1DA H1DA H 0 0 N N N 23.617 43.427 -9.112 -1.015 -1.505 0.243 H1DA 5WA 36 5WA H1DB H1DB H 0 0 N N N 24.319 41.791 -8.872 -1.916 -3.002 -0.094 H1DB 5WA 37 5WA HN1E HN1E H 0 0 N N N 19.669 41.131 -6.356 -6.551 -2.855 -0.546 HN1E 5WA 38 5WA HN1A HN1A H 0 0 N N N 20.163 40.654 -4.875 -7.422 -1.456 -0.215 HN1A 5WA 39 5WA HN1F HN1F H 0 0 N N N 23.517 43.266 -3.124 -5.244 2.569 0.695 HN1F 5WA 40 5WA HN1B HN1B H 0 0 N N N 24.873 42.851 -3.933 -3.565 2.641 0.696 HN1B 5WA 41 5WA HO1G HO1G H 0 0 N N N 28.730 45.742 -6.222 0.421 2.962 -1.315 HO1G 5WA 42 5WA H1J H1J H 0 1 N N N 25.760 46.262 -8.120 1.826 0.826 2.409 H1J 5WA 43 5WA H1K H1K H 0 1 N N N 29.358 44.159 -9.099 1.551 1.504 -1.792 H1K 5WA 44 5WA H1Y H1Y H 0 1 N N N 28.285 43.631 -7.103 0.470 2.601 1.565 H1Y 5WA 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5WA C6 N1 DOUB Y N 1 5WA N1 C2 SING Y N 2 5WA C2 N1E SING N N 3 5WA C2 N3 DOUB Y N 4 5WA C4 N3 SING Y N 5 5WA C5 C4 DOUB Y N 6 5WA C4 N1F SING N N 7 5WA C6 C5 SING Y N 8 5WA C1H C5 SING N N 9 5WA C1D C6 SING N N 10 5WA O1N C1A SING N N 11 5WA C1A H1A SING N N 12 5WA C1A H1AA SING N N 13 5WA C1A H1AB SING N N 14 5WA O1O C1B SING N N 15 5WA C1B H1B SING N N 16 5WA C1B H1BA SING N N 17 5WA C1B H1BB SING N N 18 5WA C1C O1P SING N N 19 5WA C1C H1C SING N N 20 5WA C1C H1CA SING N N 21 5WA C1C H1CB SING N N 22 5WA C1D H1D SING N N 23 5WA C1D H1DA SING N N 24 5WA C1D H1DB SING N N 25 5WA N1E HN1E SING N N 26 5WA N1E HN1A SING N N 27 5WA N1F HN1F SING N N 28 5WA N1F HN1B SING N N 29 5WA C1Y O1G SING N N 30 5WA O1G HO1G SING N N 31 5WA C1I C1H TRIP N N 32 5WA C1Y C1I SING N N 33 5WA C1V C1J DOUB Y N 34 5WA C1J C1U SING Y N 35 5WA C1J H1J SING N N 36 5WA C1W C1K SING Y N 37 5WA C1K C1U DOUB Y N 38 5WA C1K H1K SING N N 39 5WA O1N C1V SING N N 40 5WA O1O C1W SING N N 41 5WA O1P C1X SING N N 42 5WA C1U C1Y SING N N 43 5WA C1X C1V SING Y N 44 5WA C1X C1W DOUB Y N 45 5WA C1Y H1Y SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5WA SMILES ACDLabs 11.02 "C(#CC(O)c1cc(OC)c(OC)c(OC)c1)c2c(nc(nc2C)N)N" 5WA SMILES_CANONICAL CACTVS 3.352 "COc1cc(cc(OC)c1OC)[C@@H](O)C#Cc2c(C)nc(N)nc2N" 5WA SMILES CACTVS 3.352 "COc1cc(cc(OC)c1OC)[CH](O)C#Cc2c(C)nc(N)nc2N" 5WA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1c(c(nc(n1)N)N)C#C[C@@H](c2cc(c(c(c2)OC)OC)OC)O" 5WA SMILES "OpenEye OEToolkits" 1.7.0 "Cc1c(c(nc(n1)N)N)C#CC(c2cc(c(c(c2)OC)OC)OC)O" 5WA InChI InChI 1.03 "InChI=1S/C17H20N4O4/c1-9-11(16(18)21-17(19)20-9)5-6-12(22)10-7-13(23-2)15(25-4)14(8-10)24-3/h7-8,12,22H,1-4H3,(H4,18,19,20,21)/t12-/m0/s1" 5WA InChIKey InChI 1.03 MRGVCWULZNEIIL-LBPRGKRZSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5WA "SYSTEMATIC NAME" ACDLabs 11.02 "(1R)-3-(2,4-diamino-6-methylpyrimidin-5-yl)-1-(3,4,5-trimethoxyphenyl)prop-2-yn-1-ol" 5WA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(1R)-3-[2,4-bis(azanyl)-6-methyl-pyrimidin-5-yl]-1-(3,4,5-trimethoxyphenyl)prop-2-yn-1-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5WA "Create component" 2009-09-22 RCSB 5WA "Modify aromatic_flag" 2011-06-04 RCSB 5WA "Modify descriptor" 2011-06-04 RCSB 5WA "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 5WA _pdbx_chem_comp_synonyms.name "(R)-2,4-diamino-5-(3-hydroxy-3-(3,4,5-trimethoxyphenyl)prop-1-ynyl)-6-methylpyrimidine" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##