data_5X
#
_chem_comp.id 5X
_chem_comp.name "5R-(2E-METHYL-3-PHENYL-ALLYL)-3-(BENZENESULFONYLAMINO)-4-OXO-2-THIONOTHIAZOLIDINE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H18 N2 O3 S3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-09-22
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 418.553
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5X
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2AX0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5X S19 S19 S 0 1 N N N N N N 6.417 34.283 76.096 -3.948 -0.235 0.063 S19 5X 1
5X O20 O20 O 0 1 N N N N N N 5.118 34.386 75.475 -5.220 -0.119 -0.561 O20 5X 2
5X O21 O21 O 0 1 N N N N N N 7.520 35.054 75.598 -3.750 -0.895 1.306 O21 5X 3
5X N22 N22 N 0 1 N N N N N N 6.210 34.883 77.738 -2.958 -0.988 -1.029 N22 5X 4
5X C24 C24 C 0 1 Y N N N N N 6.875 32.562 76.246 -3.344 1.407 0.270 C24 5X 5
5X C25 C25 C 0 1 Y N N N N N 8.236 32.194 76.367 -3.810 2.423 -0.543 C25 5X 6
5X C26 C26 C 0 1 Y N N N N N 8.584 30.835 76.487 -3.336 3.711 -0.380 C26 5X 7
5X C27 C27 C 0 1 Y N N N N N 7.581 29.849 76.482 -2.395 3.984 0.595 C27 5X 8
5X C29 C29 C 0 1 Y N N N N N 6.227 30.213 76.362 -1.929 2.968 1.409 C29 5X 9
5X C30 C30 C 0 1 Y N N N N N 5.875 31.567 76.243 -2.407 1.681 1.250 C30 5X 10
5X C1 C1 C 0 1 N N N N N N 10.923 35.473 78.927 1.233 0.622 0.150 C1 5X 11
5X C2 C2 C 0 1 N N N N N N 11.150 35.203 77.436 2.702 0.387 0.392 C2 5X 12
5X N1 N1 N 0 1 N N N N N N 7.369 35.647 78.313 -1.591 -1.127 -0.756 N1 5X 13
5X C9 C9 C 0 1 N N N N N N 7.429 36.976 78.358 -1.159 -2.213 -0.112 C9 5X 14
5X C14 C14 C 0 1 N N R N N N 9.528 36.031 79.403 0.691 -0.459 -0.787 C14 5X 15
5X C7 C7 C 0 1 N N N N N N 8.426 35.095 78.895 -0.752 -0.181 -1.146 C7 5X 16
5X S1 S1 S 0 1 N N N N N N 9.042 37.583 78.734 0.599 -2.069 0.066 S1 5X 17
5X S2 S2 S 0 1 N N N N N N 6.192 38.052 77.999 -2.128 -3.511 0.442 S2 5X 18
5X O1 O1 O 0 1 N N N N N N 8.468 33.855 79.038 -1.107 0.817 -1.737 O1 5X 19
5X C3 C3 C 0 1 N N N N N N 11.429 33.922 77.064 3.605 1.020 -0.345 C3 5X 20
5X C4 C4 C 0 1 N N N N N N 11.092 36.406 76.506 3.146 -0.567 1.471 C4 5X 21
5X C5 C5 C 0 1 Y N N N N N 11.758 33.320 75.722 5.036 0.672 -0.221 C5 5X 22
5X C6 C6 C 0 1 Y N N N N N 11.976 31.924 75.757 5.425 -0.663 -0.106 C6 5X 23
5X C8 C8 C 0 1 Y N N N N N 11.882 34.019 74.498 6.004 1.677 -0.225 C8 5X 24
5X C10 C10 C 0 1 Y N N N N N 12.213 33.326 73.331 7.338 1.346 -0.109 C10 5X 25
5X C11 C11 C 0 1 Y N N N N N 12.303 31.240 74.586 6.763 -0.981 0.009 C11 5X 26
5X C13 C13 C 0 1 Y N N N N N 12.426 31.939 73.373 7.717 0.021 0.010 C13 5X 27
5X H22 H22 H 0 1 N N N N N N 5.421 35.498 77.733 -3.324 -1.333 -1.858 H22 5X 28
5X H25 H25 H 0 1 N N N N N N 9.005 32.953 76.367 -4.545 2.210 -1.305 H25 5X 29
5X H26 H26 H 0 1 N N N N N N 9.621 30.550 76.583 -3.700 4.505 -1.016 H26 5X 30
5X H27 H27 H 0 1 N N N N N N 7.851 28.807 76.571 -2.024 4.990 0.722 H27 5X 31
5X H29 H29 H 0 1 N N N N N N 5.460 29.452 76.361 -1.194 3.181 2.171 H29 5X 32
5X H30 H30 H 0 1 N N N N N N 4.836 31.847 76.149 -2.046 0.888 1.888 H30 5X 33
5X H11A 1H1 H 0 0 N N N N N N 11.630 36.282 79.164 0.698 0.582 1.099 H11A 5X 34
5X H12 2H1 H 0 1 N N N N N N 11.063 34.511 79.441 1.092 1.602 -0.305 H12 5X 35
5X H14 H14 H 0 1 N N N N N N 9.647 36.119 80.493 1.305 -0.532 -1.685 H14 5X 36
5X H3 H3 H 0 1 N N N N N N 11.411 33.211 77.876 3.294 1.789 -1.037 H3 5X 37
5X H41 1H4 H 0 1 N N N N N N 10.180 36.351 75.893 3.287 -1.559 1.043 H41 5X 38
5X H42 2H4 H 0 1 N N N N N N 11.976 36.406 75.851 4.085 -0.218 1.900 H42 5X 39
5X H43 3H4 H 0 1 N N N N N N 11.078 37.330 77.102 2.385 -0.612 2.250 H43 5X 40
5X H6 H6 H 0 1 N N N N N N 11.889 31.387 76.690 4.681 -1.445 -0.106 H6 5X 41
5X H8 H8 H 0 1 N N N N N N 11.721 35.086 74.466 5.709 2.712 -0.319 H8 5X 42
5X H10 H10 H 0 1 N N N N N N 12.305 33.858 72.396 8.089 2.123 -0.113 H10 5X 43
5X H11 H11 H 0 1 N N N N N N 12.462 30.172 74.612 7.065 -2.014 0.099 H11 5X 44
5X H13 H13 H 0 1 N N N N N N 12.685 31.407 72.470 8.763 -0.234 0.101 H13 5X 45
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5X S19 O20 DOUB N N 1
5X S19 O21 DOUB N N 2
5X S19 N22 SING N N 3
5X S19 C24 SING N N 4
5X N22 N1 SING N N 5
5X N22 H22 SING N N 6
5X C24 C25 SING Y N 7
5X C24 C30 DOUB Y N 8
5X C25 C26 DOUB Y N 9
5X C25 H25 SING N N 10
5X C26 C27 SING Y N 11
5X C26 H26 SING N N 12
5X C27 C29 DOUB Y N 13
5X C27 H27 SING N N 14
5X C29 C30 SING Y N 15
5X C29 H29 SING N N 16
5X C30 H30 SING N N 17
5X C1 C2 SING N N 18
5X C1 C14 SING N N 19
5X C1 H11A SING N N 20
5X C1 H12 SING N N 21
5X C2 C3 DOUB N E 22
5X C2 C4 SING N N 23
5X N1 C9 SING N N 24
5X N1 C7 SING N N 25
5X C9 S1 SING N N 26
5X C9 S2 DOUB N N 27
5X C14 C7 SING N N 28
5X C14 S1 SING N N 29
5X C14 H14 SING N N 30
5X C7 O1 DOUB N N 31
5X C3 C5 SING N N 32
5X C3 H3 SING N N 33
5X C4 H41 SING N N 34
5X C4 H42 SING N N 35
5X C4 H43 SING N N 36
5X C5 C6 SING Y N 37
5X C5 C8 DOUB Y N 38
5X C6 C11 DOUB Y N 39
5X C6 H6 SING N N 40
5X C8 C10 SING Y N 41
5X C8 H8 SING N N 42
5X C10 C13 DOUB Y N 43
5X C10 H10 SING N N 44
5X C11 C13 SING Y N 45
5X C11 H11 SING N N 46
5X C13 H13 SING N N 47
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5X SMILES ACDLabs 10.04 "O=S(=O)(NN1C(=O)C(SC1=S)CC(=C\c2ccccc2)\C)c3ccccc3"
5X InChI InChI 1.03 "InChI=1S/C19H18N2O3S3/c1-14(12-15-8-4-2-5-9-15)13-17-18(22)21(19(25)26-17)20-27(23,24)16-10-6-3-7-11-16/h2-12,17,20H,13H2,1H3/b14-12+/t17-/m1/s1"
5X InChIKey InChI 1.03 UKJRRVJSDMEEHV-ABDJAZHISA-N
5X SMILES_CANONICAL CACTVS 3.385 "CC(/C[C@H]1SC(=S)N(N[S](=O)(=O)c2ccccc2)C1=O)=C\c3ccccc3"
5X SMILES CACTVS 3.385 "CC(C[CH]1SC(=S)N(N[S](=O)(=O)c2ccccc2)C1=O)=Cc3ccccc3"
5X SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "C/C(=C\c1ccccc1)/C[C@@H]2C(=O)N(C(=S)S2)NS(=O)(=O)c3ccccc3"
5X SMILES "OpenEye OEToolkits" 1.7.5 "CC(=Cc1ccccc1)CC2C(=O)N(C(=S)S2)NS(=O)(=O)c3ccccc3"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5X "SYSTEMATIC NAME" ACDLabs 10.04 "N-{(5R)-5-[(2E)-2-methyl-3-phenylprop-2-en-1-yl]-4-oxo-2-thioxo-1,3-thiazolidin-3-yl}benzenesulfonamide"
5X "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[(5R)-5-[(E)-2-methyl-3-phenyl-prop-2-enyl]-4-oxo-2-sulfanylidene-1,3-thiazolidin-3-yl]benzenesulfonamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5X "Create component" 2005-09-22 RCSB
5X "Modify descriptor" 2011-06-04 RCSB
5X "Modify descriptor" 2012-01-05 RCSB
5X "Modify coordinates" 2012-01-05 RCSB
5X "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 5X
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C1
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#