data_5X1
#
_chem_comp.id 5X1
_chem_comp.name "3-[(4-methylpiperazin-1-yl)methyl]-~{N}-[(4~{R})-4-methyl-2-pyrimidin-5-yl-3,4-dihydro-1~{H}-isoquinolin-7-yl]-5-(trifluoromethyl)benzamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H31 F3 N6 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-12-17
_chem_comp.pdbx_modified_date 2016-10-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 524.581
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5X1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5FDX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5X1 CAA C1 C 0 1 N N N 1.564 -22.518 -31.037 -3.324 -3.839 0.532 CAA 5X1 1
5X1 CAB C2 C 0 1 N N N 6.463 -11.663 -27.717 5.523 3.132 1.563 CAB 5X1 2
5X1 CAC C3 C 0 1 N N N 11.151 -22.962 -31.128 -8.531 3.620 1.512 CAC 5X1 3
5X1 CAE C4 C 0 1 Y N N 7.041 -15.725 -29.617 1.509 1.916 0.275 CAE 5X1 4
5X1 CAF C5 C 0 1 Y N N 7.307 -14.487 -28.964 2.706 2.601 0.261 CAF 5X1 5
5X1 CAG C6 C 0 1 Y N N 3.049 -12.561 -21.759 9.823 -1.433 -0.376 CAG 5X1 6
5X1 CAH C7 C 0 1 Y N N 5.134 -12.988 -22.825 8.535 0.435 -0.738 CAH 5X1 7
5X1 CAI C8 C 0 1 Y N N 3.103 -12.963 -24.056 7.747 -1.378 0.607 CAI 5X1 8
5X1 CAJ C9 C 0 1 Y N N 3.991 -22.296 -31.891 -4.406 -1.875 -0.580 CAJ 5X1 9
5X1 CAK C10 C 0 1 Y N N 3.046 -20.478 -30.593 -2.100 -1.714 0.048 CAK 5X1 10
5X1 CAL C11 C 0 1 Y N N 5.273 -20.296 -31.524 -3.198 0.142 -1.038 CAL 5X1 11
5X1 CAM C12 C 0 1 Y N N 5.496 -16.354 -27.854 2.706 -0.149 0.024 CAM 5X1 12
5X1 CAN C13 C 0 1 N N N 8.841 -22.676 -30.819 -6.438 2.526 0.976 CAN 5X1 13
5X1 CAO C14 C 0 1 N N N 9.821 -22.276 -32.978 -8.498 1.758 -0.037 CAO 5X1 14
5X1 CAP C15 C 0 1 N N N 7.491 -22.806 -31.516 -5.639 1.876 -0.155 CAP 5X1 15
5X1 CAQ C16 C 0 1 N N N 8.440 -22.348 -33.616 -7.698 1.107 -1.169 CAQ 5X1 16
5X1 CAR C17 C 0 1 N N N 6.111 -21.954 -33.282 -5.604 0.014 -1.703 CAR 5X1 17
5X1 CAS C18 C 0 1 N N N 4.965 -14.834 -25.779 5.183 -0.241 -0.142 CAS 5X1 18
5X1 CAT C19 C 0 1 N N N 6.511 -12.898 -25.554 6.328 1.861 -0.429 CAT 5X1 19
5X1 CAX C20 C 0 1 N N N 4.589 -18.632 -29.679 -0.805 0.369 -0.385 CAX 5X1 20
5X1 CAY C21 C 0 1 Y N N 2.889 -21.758 -31.161 -3.274 -2.436 -0.015 CAY 5X1 21
5X1 CAZ C22 C 0 1 Y N N 5.030 -21.430 -32.314 -4.367 -0.589 -1.090 CAZ 5X1 22
5X1 NAU N1 N 0 1 Y N N 4.390 -12.710 -21.693 9.653 -0.248 -0.926 NAU 5X1 23
5X1 NAV N2 N 0 1 Y N N 2.405 -12.697 -22.962 8.895 -1.992 0.375 NAV 5X1 24
5X1 NAW N3 N 0 1 N N N 5.881 -17.892 -29.779 0.296 -0.171 0.174 NAW 5X1 25
5X1 OAD O1 O 0 1 N N N 3.656 -18.204 -28.957 -0.769 1.501 -0.828 OAD 5X1 26
5X1 CBA C23 C 0 1 Y N N 6.133 -16.665 -29.079 1.505 0.532 0.158 CBA 5X1 27
5X1 CBB C24 C 0 1 Y N N 4.355 -19.938 -30.472 -2.056 -0.414 -0.460 CBB 5X1 28
5X1 CBC C25 C 0 1 Y N N 5.748 -15.030 -27.132 3.906 0.543 0.010 CBC 5X1 29
5X1 CBD C26 C 0 1 Y N N 4.498 -13.116 -24.084 7.532 -0.118 0.054 CBD 5X1 30
5X1 CBE C27 C 0 1 Y N N 6.617 -14.149 -27.642 3.906 1.917 0.130 CBE 5X1 31
5X1 CBF C28 C 0 1 N N R 6.975 -12.841 -26.983 5.187 2.711 0.131 CBF 5X1 32
5X1 NBG N4 N 0 1 N N N 9.863 -23.061 -31.730 -7.761 2.923 0.473 NBG 5X1 33
5X1 NBH N5 N 0 1 N N N 7.419 -21.994 -32.668 -6.375 0.711 -0.665 NBH 5X1 34
5X1 NBI N6 N 0 1 N N N 5.223 -13.475 -25.306 6.334 0.567 0.274 NBI 5X1 35
5X1 F01 F1 F 0 1 N N N 0.558 -21.636 -31.146 -4.616 -4.114 0.993 F01 5X1 36
5X1 F02 F2 F 0 1 N N N 1.497 -23.166 -29.855 -2.985 -4.747 -0.477 F02 5X1 37
5X1 F03 F3 F 0 1 N N N 1.429 -23.431 -31.990 -2.417 -3.959 1.591 F03 5X1 38
5X1 H1 H1 H 0 1 N N N 6.756 -10.744 -27.188 5.644 2.244 2.184 H1 5X1 39
5X1 H2 H2 H 0 1 N N N 6.886 -11.652 -28.732 6.450 3.706 1.565 H2 5X1 40
5X1 H3 H3 H 0 1 N N N 5.366 -11.717 -27.777 4.715 3.746 1.960 H3 5X1 41
5X1 H4 H4 H 0 1 N N N 11.169 -23.551 -30.199 -8.725 2.939 2.340 H4 5X1 42
5X1 H5 H5 H 0 1 N N N 11.911 -23.350 -31.822 -7.963 4.478 1.872 H5 5X1 43
5X1 H6 H6 H 0 1 N N N 11.368 -21.908 -30.898 -9.478 3.962 1.094 H6 5X1 44
5X1 H7 H7 H 0 1 N N N 7.545 -15.951 -30.545 0.578 2.453 0.382 H7 5X1 45
5X1 H8 H8 H 0 1 N N N 7.999 -13.784 -29.405 2.709 3.677 0.352 H8 5X1 46
5X1 H9 H9 H 0 1 N N N 2.485 -12.335 -20.866 10.747 -1.964 -0.550 H9 5X1 47
5X1 H10 H10 H 0 1 N N N 6.205 -13.108 -22.749 8.403 1.406 -1.192 H10 5X1 48
5X1 H11 H11 H 0 1 N N N 2.564 -13.069 -24.986 6.992 -1.842 1.224 H11 5X1 49
5X1 H12 H12 H 0 1 N N N 4.033 -23.351 -32.118 -5.322 -2.445 -0.628 H12 5X1 50
5X1 H13 H13 H 0 1 N N N 2.187 -19.917 -30.256 -1.220 -2.151 0.496 H13 5X1 51
5X1 H14 H14 H 0 1 N N N 6.149 -19.691 -31.704 -3.170 1.147 -1.433 H14 5X1 52
5X1 H15 H15 H 0 1 N N N 4.815 -17.070 -27.418 2.705 -1.225 -0.068 H15 5X1 53
5X1 H16 H16 H 0 1 N N N 8.866 -23.331 -29.936 -6.558 1.814 1.793 H16 5X1 54
5X1 H17 H17 H 0 1 N N N 8.997 -21.633 -30.506 -5.907 3.407 1.337 H17 5X1 55
5X1 H18 H18 H 0 1 N N N 10.565 -22.678 -33.682 -9.469 2.079 -0.415 H18 5X1 56
5X1 H19 H19 H 0 1 N N N 10.060 -21.226 -32.752 -8.642 1.038 0.768 H19 5X1 57
5X1 H20 H20 H 0 1 N N N 6.698 -22.504 -30.816 -5.495 2.597 -0.960 H20 5X1 58
5X1 H21 H21 H 0 1 N N N 7.341 -23.855 -31.809 -4.668 1.555 0.223 H21 5X1 59
5X1 H22 H22 H 0 1 N N N 8.399 -21.652 -34.466 -8.229 0.226 -1.529 H22 5X1 60
5X1 H23 H23 H 0 1 N N N 8.261 -23.373 -33.973 -7.578 1.819 -1.985 H23 5X1 61
5X1 H24 H24 H 0 1 N N N 6.152 -21.292 -34.160 -5.317 0.722 -2.480 H24 5X1 62
5X1 H25 H25 H 0 1 N N N 5.838 -22.971 -33.601 -6.215 -0.776 -2.140 H25 5X1 63
5X1 H26 H26 H 0 1 N N N 3.887 -14.973 -25.947 5.130 -1.138 0.475 H26 5X1 64
5X1 H27 H27 H 0 1 N N N 5.317 -15.563 -25.034 5.304 -0.529 -1.187 H27 5X1 65
5X1 H28 H28 H 0 1 N N N 7.251 -13.484 -24.989 6.175 1.697 -1.496 H28 5X1 66
5X1 H29 H29 H 0 1 N N N 6.491 -11.867 -25.171 7.278 2.370 -0.266 H29 5X1 67
5X1 H30 H30 H 0 1 N N N 6.603 -18.268 -30.360 0.250 -1.047 0.587 H30 5X1 68
5X1 H31 H31 H 0 1 N N N 8.073 -12.773 -26.968 5.063 3.599 -0.488 H31 5X1 69
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5X1 CAQ CAO SING N N 1
5X1 CAQ NBH SING N N 2
5X1 CAR NBH SING N N 3
5X1 CAR CAZ SING N N 4
5X1 CAO NBG SING N N 5
5X1 NBH CAP SING N N 6
5X1 CAZ CAJ DOUB Y N 7
5X1 CAZ CAL SING Y N 8
5X1 F03 CAA SING N N 9
5X1 CAJ CAY SING Y N 10
5X1 NBG CAC SING N N 11
5X1 NBG CAN SING N N 12
5X1 CAL CBB DOUB Y N 13
5X1 CAP CAN SING N N 14
5X1 CAY CAA SING N N 15
5X1 CAY CAK DOUB Y N 16
5X1 F01 CAA SING N N 17
5X1 CAA F02 SING N N 18
5X1 CAK CBB SING Y N 19
5X1 CBB CAX SING N N 20
5X1 NAW CAX SING N N 21
5X1 NAW CBA SING N N 22
5X1 CAX OAD DOUB N N 23
5X1 CAE CBA DOUB Y N 24
5X1 CAE CAF SING Y N 25
5X1 CBA CAM SING Y N 26
5X1 CAF CBE DOUB Y N 27
5X1 CAM CBC DOUB Y N 28
5X1 CAB CBF SING N N 29
5X1 CBE CBC SING Y N 30
5X1 CBE CBF SING N N 31
5X1 CBC CAS SING N N 32
5X1 CBF CAT SING N N 33
5X1 CAS NBI SING N N 34
5X1 CAT NBI SING N N 35
5X1 NBI CBD SING N N 36
5X1 CBD CAI DOUB Y N 37
5X1 CBD CAH SING Y N 38
5X1 CAI NAV SING Y N 39
5X1 NAV CAG DOUB Y N 40
5X1 CAH NAU DOUB Y N 41
5X1 CAG NAU SING Y N 42
5X1 CAB H1 SING N N 43
5X1 CAB H2 SING N N 44
5X1 CAB H3 SING N N 45
5X1 CAC H4 SING N N 46
5X1 CAC H5 SING N N 47
5X1 CAC H6 SING N N 48
5X1 CAE H7 SING N N 49
5X1 CAF H8 SING N N 50
5X1 CAG H9 SING N N 51
5X1 CAH H10 SING N N 52
5X1 CAI H11 SING N N 53
5X1 CAJ H12 SING N N 54
5X1 CAK H13 SING N N 55
5X1 CAL H14 SING N N 56
5X1 CAM H15 SING N N 57
5X1 CAN H16 SING N N 58
5X1 CAN H17 SING N N 59
5X1 CAO H18 SING N N 60
5X1 CAO H19 SING N N 61
5X1 CAP H20 SING N N 62
5X1 CAP H21 SING N N 63
5X1 CAQ H22 SING N N 64
5X1 CAQ H23 SING N N 65
5X1 CAR H24 SING N N 66
5X1 CAR H25 SING N N 67
5X1 CAS H26 SING N N 68
5X1 CAS H27 SING N N 69
5X1 CAT H28 SING N N 70
5X1 CAT H29 SING N N 71
5X1 NAW H30 SING N N 72
5X1 CBF H31 SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5X1 InChI InChI 1.03 "InChI=1S/C28H31F3N6O/c1-19-15-37(25-13-32-18-33-14-25)17-22-12-24(3-4-26(19)22)34-27(38)21-9-20(10-23(11-21)28(29,30)31)16-36-7-5-35(2)6-8-36/h3-4,9-14,18-19H,5-8,15-17H2,1-2H3,(H,34,38)/t19-/m0/s1"
5X1 InChIKey InChI 1.03 FXWGWJNBGHQODS-IBGZPJMESA-N
5X1 SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CN(Cc2cc(NC(=O)c3cc(CN4CCN(C)CC4)cc(c3)C(F)(F)F)ccc12)c5cncnc5"
5X1 SMILES CACTVS 3.385 "C[CH]1CN(Cc2cc(NC(=O)c3cc(CN4CCN(C)CC4)cc(c3)C(F)(F)F)ccc12)c5cncnc5"
5X1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C[C@H]1CN(Cc2c1ccc(c2)NC(=O)c3cc(cc(c3)C(F)(F)F)CN4CCN(CC4)C)c5cncnc5"
5X1 SMILES "OpenEye OEToolkits" 2.0.4 "CC1CN(Cc2c1ccc(c2)NC(=O)c3cc(cc(c3)C(F)(F)F)CN4CCN(CC4)C)c5cncnc5"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5X1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "3-[(4-methylpiperazin-1-yl)methyl]-~{N}-[(4~{R})-4-methyl-2-pyrimidin-5-yl-3,4-dihydro-1~{H}-isoquinolin-7-yl]-5-(trifluoromethyl)benzamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5X1 "Create component" 2015-12-17 EBI
5X1 "Initial release" 2016-10-26 RCSB
#