data_5X6 # _chem_comp.id 5X6 _chem_comp.name ;(1~{R})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{R} )-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H56 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Zeaxanthin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-12-17 _chem_comp.pdbx_modified_date 2024-02-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 568.871 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5X6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5FCY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5X6 C17 C1 C 0 1 N N N N N N 8.286 46.734 21.892 -2.980 -0.496 -0.043 C17 5X6 1 5X6 C18 C2 C 0 1 N N N N N N 8.877 47.390 22.965 -1.825 0.257 -0.041 C18 5X6 2 5X6 C16 C3 C 0 1 N N N N N N 6.811 46.284 21.947 -4.228 0.138 -0.054 C16 5X6 3 5X6 C26 C4 C 0 1 N N N N N N 17.504 51.738 26.129 7.775 0.726 0.011 C26 5X6 4 5X6 C19 C5 C 0 1 N N N N N N 10.300 47.834 23.042 -0.578 -0.376 -0.030 C19 5X6 5 5X6 C10 C6 C 0 1 N N N N N N -0.034 41.300 18.088 -13.069 -1.786 -0.900 C10 5X6 6 5X6 C11 C7 C 0 1 N N N N N N 1.770 42.683 20.128 -10.168 -0.831 -0.082 C11 5X6 7 5X6 C12 C8 C 0 1 N N N N N N 2.495 43.827 20.336 -9.029 -0.089 -0.081 C12 5X6 8 5X6 C13 C9 C 0 1 N N N N N N 3.968 44.261 20.127 -7.775 -0.725 -0.069 C13 5X6 9 5X6 C20 C10 C 0 1 N N N N N N 10.843 48.956 23.602 0.577 0.377 -0.028 C20 5X6 10 5X6 C14 C11 C 0 1 N N N N N N 4.683 45.012 21.034 -6.632 0.020 -0.068 C14 5X6 11 5X6 C15 C12 C 0 1 N N N N N N 6.111 45.522 21.044 -5.382 -0.614 -0.056 C15 5X6 12 5X6 C35 C13 C 0 1 N N N N N N 22.151 53.324 24.951 11.687 0.465 -2.367 C35 5X6 13 5X6 C34 C14 C 0 1 N N N N N N 22.118 53.494 26.506 12.414 0.471 -1.021 C34 5X6 14 5X6 C33 C15 C 0 1 N N N N N N 23.558 53.633 27.029 13.507 -0.600 -1.031 C33 5X6 15 5X6 C40 C16 C 0 1 N N N N N N 12.119 49.859 25.885 2.899 2.001 -0.026 C40 5X6 16 5X6 C32 C17 C 0 1 N N R N N N 24.405 52.405 26.760 14.054 -0.751 0.394 C32 5X6 17 5X6 C31 C18 C 0 1 N N N N N N 23.544 51.136 26.781 12.962 -1.366 1.271 C31 5X6 18 5X6 C30 C19 C 0 1 N N N N N N 22.203 51.205 27.464 11.674 -0.616 1.094 C30 5X6 19 5X6 C29 C20 C 0 1 N N N N N N 21.348 52.319 27.113 11.431 0.191 0.078 C29 5X6 20 5X6 C39 C21 C 0 1 N N N N N N 16.821 52.757 27.017 7.694 2.230 0.000 C39 5X6 21 5X6 C28 C22 C 0 1 N N N N N N 19.889 52.310 27.131 10.167 0.832 0.024 C28 5X6 22 5X6 C27 C23 C 0 1 N N N N N N 18.963 51.850 26.230 9.028 0.090 0.022 C27 5X6 23 5X6 C21 C24 C 0 1 N N N N N N 12.314 49.266 23.570 1.825 -0.256 -0.017 C21 5X6 24 5X6 C36 C25 C 0 1 N N N N N N 21.377 54.834 26.774 13.051 1.844 -0.794 C36 5X6 25 5X6 C22 C26 C 0 1 N N N N N N 12.988 49.708 24.670 2.980 0.496 -0.015 C22 5X6 26 5X6 C23 C27 C 0 1 N N N N N N 14.420 50.028 24.889 4.228 -0.137 -0.004 C23 5X6 27 5X6 C24 C28 C 0 1 N N N N N N 15.239 50.931 25.479 5.382 0.615 -0.002 C24 5X6 28 5X6 C25 C29 C 0 1 N N N N N N 16.701 50.898 25.439 6.631 -0.020 0.009 C25 5X6 29 5X6 C38 C30 C 0 1 N N N N N N 21.803 50.032 28.268 10.598 -0.796 2.134 C38 5X6 30 5X6 C01 C31 C 0 1 N N N N N N 0.398 43.278 22.751 -10.550 0.654 2.145 C01 5X6 31 5X6 C02 C32 C 0 1 N N N N N N -0.261 42.455 21.704 -11.648 0.546 1.118 C02 5X6 32 5X6 C03 C33 C 0 1 N N N N N N 0.334 42.304 20.380 -11.428 -0.195 0.045 C03 5X6 33 5X6 C04 C34 C 0 1 N N N N N N -0.709 42.111 19.227 -12.438 -0.400 -1.047 C04 5X6 34 5X6 C05 C35 C 0 1 N N N N N N -2.103 41.448 19.556 -13.531 0.667 -0.961 C05 5X6 35 5X6 C06 C36 C 0 1 N N R N N N -2.209 40.925 20.987 -14.044 0.723 0.484 C06 5X6 36 5X6 C07 C37 C 0 1 N N N N N N -1.661 42.005 21.930 -12.932 1.280 1.374 C07 5X6 37 5X6 O08 O1 O 0 1 N N N N N N -3.603 40.686 21.249 -15.188 1.576 0.554 O08 5X6 38 5X6 C09 C38 C 0 1 N N N N N N -1.028 43.496 18.601 -11.743 -0.301 -2.406 C09 5X6 39 5X6 O37 O2 O 0 1 N N N N N N 24.978 52.551 25.470 15.198 -1.607 0.380 O37 5X6 40 5X6 C41 C39 C 0 1 N N N N N N 9.164 46.469 20.705 -2.899 -2.000 -0.039 C41 5X6 41 5X6 C42 C40 C 0 1 N N N N N N 4.718 43.852 18.879 -7.694 -2.230 -0.059 C42 5X6 42 5X6 H181 H1 H 0 0 N N N N N N 8.250 47.597 23.820 -1.883 1.335 -0.049 H181 5X6 43 5X6 H161 H2 H 0 0 N N N N N N 6.254 46.613 22.812 -4.286 1.216 -0.062 H161 5X6 44 5X6 H191 H3 H 0 0 N N N N N N 11.012 47.164 22.583 -0.520 -1.454 -0.022 H191 5X6 45 5X6 H102 H4 H 0 0 N N N N N N 0.225 40.296 18.456 -13.794 -1.942 -1.699 H102 5X6 46 5X6 H101 H5 H 0 0 N N N N N N -0.729 41.212 17.240 -12.292 -2.548 -0.962 H101 5X6 47 5X6 H103 H6 H 0 0 N N N N N N 0.880 41.818 17.761 -13.571 -1.856 0.065 H103 5X6 48 5X6 H111 H7 H 0 0 N N N N N N 2.351 41.884 19.691 -10.112 -1.905 -0.180 H111 5X6 49 5X6 H121 H8 H 0 0 N N N N N N 1.891 44.622 20.747 -9.087 0.989 -0.088 H121 5X6 50 5X6 H201 H9 H 0 0 N N N N N N 10.182 49.655 24.092 0.519 1.455 -0.036 H201 5X6 51 5X6 H141 H10 H 0 0 N N N N N N 4.115 45.292 21.909 -6.690 1.099 -0.075 H141 5X6 52 5X6 H151 H11 H 0 0 N N N N N N 6.686 45.231 20.177 -5.324 -1.692 -0.049 H151 5X6 53 5X6 H352 H12 H 0 0 N N N N N N 22.667 52.387 24.695 12.411 0.584 -3.172 H352 5X6 54 5X6 H353 H13 H 0 0 N N N N N N 21.122 53.294 24.564 11.158 -0.479 -2.490 H353 5X6 55 5X6 H351 H14 H 0 0 N N N N N N 22.688 54.172 24.501 10.972 1.288 -2.397 H351 5X6 56 5X6 H331 H15 H 0 0 N N N N N N 24.028 54.498 26.538 13.087 -1.548 -1.365 H331 5X6 57 5X6 H332 H16 H 0 0 N N N N N N 23.522 53.803 28.115 14.310 -0.297 -1.704 H332 5X6 58 5X6 H403 H17 H 0 0 N N N N N N 12.727 50.217 26.729 2.873 2.371 0.999 H403 5X6 59 5X6 H402 H18 H 0 0 N N N N N N 11.319 50.584 25.676 3.771 2.408 -0.538 H402 5X6 60 5X6 H401 H19 H 0 0 N N N N N N 11.674 48.886 26.141 1.993 2.312 -0.547 H401 5X6 61 5X6 H321 H20 H 0 0 N N N N N N 25.188 52.324 27.529 14.331 0.228 0.786 H321 5X6 62 5X6 H311 H21 H 0 0 N N N N N N 23.365 50.845 25.736 12.815 -2.408 0.987 H311 5X6 63 5X6 H312 H22 H 0 0 N N N N N N 24.128 50.352 27.285 13.268 -1.318 2.316 H312 5X6 64 5X6 H393 H25 H 0 0 N N N N N N 17.581 53.374 27.519 7.680 2.586 -1.030 H393 5X6 65 5X6 H391 H26 H 0 0 N N N N N N 16.172 53.400 26.405 6.783 2.549 0.507 H391 5X6 66 5X6 H392 H27 H 0 0 N N N N N N 16.214 52.237 27.772 8.560 2.645 0.516 H392 5X6 67 5X6 H281 H28 H 0 0 N N N N N N 19.458 52.747 28.020 10.110 1.909 -0.016 H281 5X6 68 5X6 H271 H29 H 0 0 N N N N N N 19.444 51.460 25.345 9.087 -0.989 0.030 H271 5X6 69 5X6 H211 H30 H 0 0 N N N N N N 12.855 49.134 22.645 1.883 -1.335 -0.009 H211 5X6 70 5X6 H361 H31 H 0 0 N N N N N N 21.321 55.012 27.858 12.274 2.608 -0.791 H361 5X6 71 5X6 H363 H32 H 0 0 N N N N N N 21.926 55.658 26.295 13.570 1.850 0.164 H363 5X6 72 5X6 H362 H33 H 0 0 N N N N N N 20.360 54.780 26.358 13.762 2.051 -1.594 H362 5X6 73 5X6 H231 H34 H 0 0 N N N N N N 15.023 49.273 24.407 4.286 -1.216 0.004 H231 5X6 74 5X6 H241 H35 H 0 0 N N N N N N 14.775 51.741 26.023 5.324 1.693 -0.010 H241 5X6 75 5X6 H251 H36 H 0 0 N N N N N N 17.171 50.152 24.816 6.689 -1.098 0.017 H251 5X6 76 5X6 H381 H37 H 0 0 N N N N N N 20.811 50.210 28.709 10.948 -1.485 2.904 H381 5X6 77 5X6 H383 H38 H 0 0 N N N N N N 21.763 49.142 27.623 10.366 0.167 2.587 H383 5X6 78 5X6 H382 H39 H 0 0 N N N N N N 22.538 49.870 29.071 9.702 -1.202 1.664 H382 5X6 79 5X6 H011 H40 H 0 0 N N N N N N -0.209 43.261 23.668 -10.916 1.206 3.010 H011 5X6 80 5X6 H012 H41 H 0 0 N N N N N N 1.396 42.868 22.965 -10.243 -0.345 2.454 H012 5X6 81 5X6 H013 H42 H 0 0 N N N N N N 0.495 44.314 22.395 -9.698 1.178 1.712 H013 5X6 82 5X6 H051 H45 H 0 0 N N N N N N -2.891 42.200 19.401 -13.119 1.637 -1.240 H051 5X6 83 5X6 H052 H46 H 0 0 N N N N N N -2.259 40.606 18.866 -14.351 0.407 -1.630 H052 5X6 84 5X6 H061 H47 H 0 0 N N N N N N -1.620 40.002 21.094 -14.314 -0.280 0.815 H061 5X6 85 5X6 H071 H48 H 0 0 N N N N N N -2.312 42.887 21.837 -13.215 1.159 2.419 H071 5X6 86 5X6 H072 H49 H 0 0 N N N N N N -1.721 41.611 22.955 -12.791 2.340 1.161 H072 5X6 87 5X6 H081 H50 H 0 0 N N N N N N -3.708 40.358 22.135 -15.565 1.657 1.441 H081 5X6 88 5X6 H093 H51 H 0 0 N N N N N N -1.513 44.136 19.353 -12.486 -0.364 -3.201 H093 5X6 89 5X6 H091 H52 H 0 0 N N N N N N -0.094 43.970 18.264 -11.216 0.651 -2.477 H091 5X6 90 5X6 H092 H53 H 0 0 N N N N N N -1.703 43.364 17.742 -11.030 -1.119 -2.510 H092 5X6 91 5X6 H371 H54 H 0 0 N N N N N N 25.514 53.335 25.448 15.587 -1.759 1.253 H371 5X6 92 5X6 H411 H55 H 0 0 N N N N N N 10.168 46.879 20.892 -2.871 -2.366 -1.065 H411 5X6 93 5X6 H413 H56 H 0 0 N N N N N N 9.236 45.384 20.537 -1.995 -2.314 0.483 H413 5X6 94 5X6 H412 H57 H 0 0 N N N N N N 8.732 46.949 19.815 -3.772 -2.410 0.469 H412 5X6 95 5X6 H422 H58 H 0 0 N N N N N N 5.741 44.254 18.917 -7.669 -2.600 -1.084 H422 5X6 96 5X6 H421 H59 H 0 0 N N N N N N 4.758 42.754 18.819 -6.789 -2.541 0.463 H421 5X6 97 5X6 H423 H60 H 0 0 N N N N N N 4.200 44.249 17.993 -8.566 -2.637 0.453 H423 5X6 98 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5X6 C10 C04 SING N N 1 5X6 C09 C04 SING N N 2 5X6 C42 C13 SING N N 3 5X6 C04 C05 SING N N 4 5X6 C04 C03 SING N N 5 5X6 C05 C06 SING N N 6 5X6 C13 C12 SING N N 7 5X6 C13 C14 DOUB N E 8 5X6 C11 C12 DOUB N E 9 5X6 C11 C03 SING N N 10 5X6 C03 C02 DOUB N N 11 5X6 C41 C17 SING N N 12 5X6 C06 O08 SING N N 13 5X6 C06 C07 SING N N 14 5X6 C14 C15 SING N N 15 5X6 C15 C16 DOUB N E 16 5X6 C02 C07 SING N N 17 5X6 C02 C01 SING N N 18 5X6 C17 C16 SING N N 19 5X6 C17 C18 DOUB N E 20 5X6 C18 C19 SING N N 21 5X6 C19 C20 DOUB N E 22 5X6 C21 C20 SING N N 23 5X6 C21 C22 DOUB N E 24 5X6 C22 C23 SING N N 25 5X6 C22 C40 SING N N 26 5X6 C23 C24 DOUB N E 27 5X6 C35 C34 SING N N 28 5X6 C25 C24 SING N N 29 5X6 C25 C26 DOUB N E 30 5X6 O37 C32 SING N N 31 5X6 C26 C27 SING N N 32 5X6 C26 C39 SING N N 33 5X6 C27 C28 DOUB N E 34 5X6 C34 C36 SING N N 35 5X6 C34 C33 SING N N 36 5X6 C34 C29 SING N N 37 5X6 C32 C31 SING N N 38 5X6 C32 C33 SING N N 39 5X6 C31 C30 SING N N 40 5X6 C29 C28 SING N N 41 5X6 C29 C30 DOUB N N 42 5X6 C30 C38 SING N N 43 5X6 C18 H181 SING N N 44 5X6 C16 H161 SING N N 45 5X6 C19 H191 SING N N 46 5X6 C10 H102 SING N N 47 5X6 C10 H101 SING N N 48 5X6 C10 H103 SING N N 49 5X6 C11 H111 SING N N 50 5X6 C12 H121 SING N N 51 5X6 C20 H201 SING N N 52 5X6 C14 H141 SING N N 53 5X6 C15 H151 SING N N 54 5X6 C35 H352 SING N N 55 5X6 C35 H353 SING N N 56 5X6 C35 H351 SING N N 57 5X6 C33 H331 SING N N 58 5X6 C33 H332 SING N N 59 5X6 C40 H403 SING N N 60 5X6 C40 H402 SING N N 61 5X6 C40 H401 SING N N 62 5X6 C32 H321 SING N N 63 5X6 C31 H311 SING N N 64 5X6 C31 H312 SING N N 65 5X6 C39 H393 SING N N 66 5X6 C39 H391 SING N N 67 5X6 C39 H392 SING N N 68 5X6 C28 H281 SING N N 69 5X6 C27 H271 SING N N 70 5X6 C21 H211 SING N N 71 5X6 C36 H361 SING N N 72 5X6 C36 H363 SING N N 73 5X6 C36 H362 SING N N 74 5X6 C23 H231 SING N N 75 5X6 C24 H241 SING N N 76 5X6 C25 H251 SING N N 77 5X6 C38 H381 SING N N 78 5X6 C38 H383 SING N N 79 5X6 C38 H382 SING N N 80 5X6 C01 H011 SING N N 81 5X6 C01 H012 SING N N 82 5X6 C01 H013 SING N N 83 5X6 C05 H051 SING N N 84 5X6 C05 H052 SING N N 85 5X6 C06 H061 SING N N 86 5X6 C07 H071 SING N N 87 5X6 C07 H072 SING N N 88 5X6 O08 H081 SING N N 89 5X6 C09 H093 SING N N 90 5X6 C09 H091 SING N N 91 5X6 C09 H092 SING N N 92 5X6 O37 H371 SING N N 93 5X6 C41 H411 SING N N 94 5X6 C41 H413 SING N N 95 5X6 C41 H412 SING N N 96 5X6 C42 H422 SING N N 97 5X6 C42 H421 SING N N 98 5X6 C42 H423 SING N N 99 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5X6 InChI InChI 1.03 "InChI=1S/C40H56O2/c1-29(17-13-19-31(3)21-23-37-33(5)25-35(41)27-39(37,7)8)15-11-12-16-30(2)18-14-20-32(4)22-24-38-34(6)26-36(42)28-40(38,9)10/h11-24,35-36,41-42H,25-28H2,1-10H3/b12-11+,17-13+,18-14+,23-21+,24-22+,29-15+,30-16+,31-19+,32-20+/t35-,36-/m1/s1" 5X6 InChIKey InChI 1.03 JKQXZKUSFCKOGQ-QAYBQHTQSA-N 5X6 SMILES_CANONICAL CACTVS 3.385 "CC(=C/C=C/C=C(C)/C=C/C=C(C)/C=C/C1=C(C)C[C@@H](O)CC1(C)C)\C=C\C=C(C)\C=C\C2=C(C)C[C@@H](O)CC2(C)C" 5X6 SMILES CACTVS 3.385 "CC(=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)C[CH](O)CC1(C)C)C=CC=C(C)C=CC2=C(C)C[CH](O)CC2(C)C" 5X6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CC1=C(C(C[C@@H](C1)O)(C)C)/C=C/C(=C/C=C/C(=C/C=C/C=C(/C=C/C=C(/C=C/C2=C(C[C@H](CC2(C)C)O)C)\C)\C)/C)/C" 5X6 SMILES "OpenEye OEToolkits" 2.0.4 "CC1=C(C(CC(C1)O)(C)C)C=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC2=C(CC(CC2(C)C)O)C)C)C" # _pdbx_chem_comp_identifier.comp_id 5X6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.4 _pdbx_chem_comp_identifier.identifier "(1~{R})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5X6 "Create component" 2015-12-17 RCSB 5X6 "Modify synonyms" 2016-01-26 RCSB 5X6 "Modify synonyms" 2020-06-05 PDBE 5X6 "Initial release" 2024-02-14 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 5X6 _pdbx_chem_comp_synonyms.name Zeaxanthin _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #