data_5X7 # _chem_comp.id 5X7 _chem_comp.name "(2R,3R,4R,5S)-1-{[4-({4-[(2R,6S)-2,6-dimethylmorpholin-4-yl]-2-nitroanilino}methyl)phenyl]methyl}-2-(hydroxymethyl)piperidine-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H36 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-24 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 516.587 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5X7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RD2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5X7 N1 N1 N 0 1 N N N -13.225 -33.275 -39.211 6.890 0.526 -0.132 N1 5X7 1 5X7 N3 N2 N 0 1 N N N -10.729 -38.531 -38.924 1.413 -0.445 0.140 N3 5X7 2 5X7 C4 C1 C 0 1 N N N -15.669 -31.673 -36.771 9.053 2.507 0.821 C4 5X7 3 5X7 C5 C2 C 0 1 N N N -13.828 -32.714 -37.981 7.161 1.862 -0.682 C5 5X7 4 5X7 C6 C3 C 0 1 Y N N -12.582 -34.584 -39.187 5.513 0.282 -0.064 C6 5X7 5 5X7 C7 C4 C 0 1 Y N N -11.471 -34.784 -39.887 5.046 -0.927 0.435 C7 5X7 6 5X7 C8 C5 C 0 1 Y N N -10.823 -36.014 -39.861 3.688 -1.168 0.503 C8 5X7 7 5X7 C10 C6 C 0 1 N N N -9.296 -38.781 -38.745 0.463 0.610 -0.219 C10 5X7 8 5X7 C13 C7 C 0 1 Y N N -7.371 -38.280 -35.535 -2.892 -0.237 1.293 C13 5X7 9 5X7 C15 C8 C 0 1 Y N N -9.342 -39.562 -34.943 -2.873 -0.986 -0.982 C15 5X7 10 5X7 C17 C9 C 0 1 N N N -7.635 -38.976 -32.994 -4.932 -1.370 0.388 C17 5X7 11 5X7 C20 C10 C 0 1 N N R -6.697 -42.394 -31.829 -8.203 0.247 -0.543 C20 5X7 12 5X7 C21 C11 C 0 1 N N R -5.448 -42.611 -32.598 -8.144 1.453 0.400 C21 5X7 13 5X7 C22 C12 C 0 1 N N S -4.720 -41.305 -32.900 -6.700 1.954 0.485 C22 5X7 14 5X7 C24 C13 C 0 1 Y N N -12.478 -36.867 -38.302 3.256 1.010 -0.421 C24 5X7 15 5X7 C26 C14 C 0 1 N N N -13.699 -32.557 -40.477 7.564 -0.488 -0.956 C26 5X7 16 5X7 C1 C15 C 0 1 N N N -15.501 -31.280 -41.720 9.612 -0.786 0.448 C1 5X7 17 5X7 C11 C16 C 0 1 Y N N -8.907 -38.849 -37.265 -0.945 0.095 -0.061 C11 5X7 18 5X7 C12 C17 C 0 1 Y N N -7.759 -38.252 -36.873 -1.601 0.235 1.148 C12 5X7 19 5X7 C14 C18 C 0 1 Y N N -8.156 -38.937 -34.564 -3.527 -0.850 0.229 C14 5X7 20 5X7 C16 C19 C 0 1 Y N N -9.735 -39.529 -36.313 -1.584 -0.508 -1.128 C16 5X7 21 5X7 C18 C20 C 0 1 N N R -7.607 -41.360 -32.516 -7.257 -0.842 -0.031 C18 5X7 22 5X7 C19 C21 C 0 1 N N N -8.821 -41.119 -31.629 -7.298 -2.040 -0.981 C19 5X7 23 5X7 C2 C22 C 0 1 N N S -15.125 -32.277 -40.496 9.075 -0.271 -0.891 C2 5X7 24 5X7 C23 C23 C 0 1 N N N -5.685 -40.272 -33.576 -5.798 0.816 0.968 C23 5X7 25 5X7 C25 C24 C 0 1 Y N N -13.101 -35.613 -38.363 4.614 1.250 -0.489 C25 5X7 26 5X7 C3 C25 C 0 1 N N R -15.256 -32.447 -38.071 8.660 2.146 -0.615 C3 5X7 27 5X7 C9 C26 C 0 1 Y N N -11.352 -37.106 -39.015 2.789 -0.201 0.072 C9 5X7 28 5X7 N2 N3 N 1 1 N N N -9.649 -36.118 -40.653 3.191 -2.457 1.033 N2 5X7 29 5X7 N4 N4 N 0 1 N N N -6.847 -40.093 -32.707 -5.889 -0.313 0.032 N4 5X7 30 5X7 O1 O1 O 0 1 N N N -15.537 -31.661 -39.208 9.437 1.075 -1.106 O1 5X7 31 5X7 O2 O2 O -1 1 N N N -8.933 -37.333 -40.794 3.756 -2.988 1.973 O2 5X7 32 5X7 O3 O3 O 0 1 N N N -9.183 -34.949 -41.297 2.216 -2.987 0.531 O3 5X7 33 5X7 O4 O4 O 0 1 N N N -8.364 -40.551 -30.450 -6.960 -1.612 -2.302 O4 5X7 34 5X7 O5 O5 O 0 1 N N N -7.380 -43.618 -31.704 -9.538 -0.261 -0.585 O5 5X7 35 5X7 O6 O6 O 0 1 N N N -4.612 -43.472 -31.789 -8.982 2.494 -0.105 O6 5X7 36 5X7 O7 O7 O 0 1 N N N -3.537 -41.521 -33.728 -6.628 3.045 1.406 O7 5X7 37 5X7 H1 H1 H 0 1 N N N -11.182 -38.978 -38.153 1.087 -1.314 0.425 H1 5X7 38 5X7 H2 H2 H 0 1 N N N -15.447 -32.292 -35.889 8.812 1.675 1.483 H2 5X7 39 5X7 H3 H3 H 0 1 N N N -15.104 -30.731 -36.710 10.123 2.708 0.865 H3 5X7 40 5X7 H4 H4 H 0 1 N N N -16.746 -31.452 -36.802 8.502 3.394 1.136 H4 5X7 41 5X7 H5 H5 H 0 1 N N N -13.664 -33.430 -37.162 6.826 1.901 -1.719 H5 5X7 42 5X7 H6 H6 H 0 1 N N N -13.316 -31.768 -37.749 6.620 2.610 -0.101 H6 5X7 43 5X7 H7 H7 H 0 1 N N N -11.066 -33.981 -40.484 5.745 -1.679 0.770 H7 5X7 44 5X7 H8 H8 H 0 1 N N N -9.040 -39.737 -39.224 0.610 1.470 0.436 H8 5X7 45 5X7 H9 H9 H 0 1 N N N -8.731 -37.968 -39.224 0.626 0.910 -1.254 H9 5X7 46 5X7 H10 H10 H 0 1 N N N -6.455 -37.791 -35.237 -3.403 -0.131 2.238 H10 5X7 47 5X7 H11 H11 H 0 1 N N N -9.955 -40.064 -34.209 -3.369 -1.465 -1.813 H11 5X7 48 5X7 H12 H12 H 0 1 N N N -7.043 -38.070 -32.799 -5.079 -2.228 -0.268 H12 5X7 49 5X7 H13 H13 H 0 1 N N N -8.514 -38.989 -32.333 -5.093 -1.672 1.423 H13 5X7 50 5X7 H14 H14 H 0 1 N N N -6.436 -42.009 -30.832 -7.898 0.553 -1.544 H14 5X7 51 5X7 H15 H15 H 0 1 N N N -5.688 -43.110 -33.548 -8.488 1.157 1.391 H15 5X7 52 5X7 H16 H16 H 0 1 N N N -4.400 -40.872 -31.941 -6.371 2.286 -0.499 H16 5X7 53 5X7 H17 H17 H 0 1 N N N -12.898 -37.646 -37.683 2.557 1.763 -0.752 H17 5X7 54 5X7 H18 H18 H 0 1 N N N -13.459 -33.189 -41.344 7.319 -1.482 -0.580 H18 5X7 55 5X7 H19 H19 H 0 1 N N N -13.158 -31.603 -40.557 7.225 -0.399 -1.989 H19 5X7 56 5X7 H20 H20 H 0 1 N N N -16.583 -31.083 -41.714 9.395 -1.850 0.541 H20 5X7 57 5X7 H21 H21 H 0 1 N N N -14.955 -30.332 -41.602 10.690 -0.630 0.491 H21 5X7 58 5X7 H22 H22 H 0 1 N N N -15.219 -31.749 -42.674 9.133 -0.245 1.264 H22 5X7 59 5X7 H23 H23 H 0 1 N N N -7.139 -37.750 -37.601 -1.105 0.714 1.979 H23 5X7 60 5X7 H24 H24 H 0 1 N N N -10.648 -40.012 -36.630 -1.075 -0.609 -2.075 H24 5X7 61 5X7 H25 H25 H 0 1 N N N -7.935 -41.753 -33.490 -7.571 -1.157 0.964 H25 5X7 62 5X7 H26 H26 H 0 1 N N N -9.523 -40.435 -32.129 -6.582 -2.792 -0.649 H26 5X7 63 5X7 H27 H27 H 0 1 N N N -9.327 -42.072 -31.416 -8.300 -2.468 -0.984 H27 5X7 64 5X7 H28 H28 H 0 1 N N N -15.684 -33.212 -40.646 9.534 -0.886 -1.687 H28 5X7 65 5X7 H29 H29 H 0 1 N N N -5.167 -39.310 -33.708 -4.767 1.165 1.017 H29 5X7 66 5X7 H30 H30 H 0 1 N N N -6.009 -40.652 -34.556 -6.119 0.493 1.959 H30 5X7 67 5X7 H31 H31 H 0 1 N N N -13.988 -35.429 -37.775 4.977 2.193 -0.873 H31 5X7 68 5X7 H32 H32 H 0 1 N N N -15.814 -33.394 -38.106 8.859 3.035 -1.242 H32 5X7 69 5X7 H34 H34 H 0 1 N N N -9.099 -40.387 -29.871 -6.965 -2.321 -2.959 H34 5X7 70 5X7 H35 H35 H 0 1 N N N -8.182 -43.485 -31.212 -10.192 0.377 -0.899 H35 5X7 71 5X7 H36 H36 H 0 1 N N N -5.074 -44.282 -31.606 -8.993 3.291 0.444 H36 5X7 72 5X7 H37 H37 H 0 1 N N N -2.964 -42.149 -33.304 -5.740 3.413 1.510 H37 5X7 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5X7 C1 C2 SING N N 1 5X7 O3 N2 DOUB N N 2 5X7 O2 N2 SING N N 3 5X7 N2 C8 SING N N 4 5X7 C2 C26 SING N N 5 5X7 C2 O1 SING N N 6 5X7 C26 N1 SING N N 7 5X7 C7 C8 DOUB Y N 8 5X7 C7 C6 SING Y N 9 5X7 C8 C9 SING Y N 10 5X7 N1 C6 SING N N 11 5X7 N1 C5 SING N N 12 5X7 O1 C3 SING N N 13 5X7 C6 C25 DOUB Y N 14 5X7 C9 N3 SING N N 15 5X7 C9 C24 DOUB Y N 16 5X7 N3 C10 SING N N 17 5X7 C10 C11 SING N N 18 5X7 C25 C24 SING Y N 19 5X7 C3 C5 SING N N 20 5X7 C3 C4 SING N N 21 5X7 C11 C12 DOUB Y N 22 5X7 C11 C16 SING Y N 23 5X7 C12 C13 SING Y N 24 5X7 C16 C15 DOUB Y N 25 5X7 C13 C14 DOUB Y N 26 5X7 C15 C14 SING Y N 27 5X7 C14 C17 SING N N 28 5X7 O7 C22 SING N N 29 5X7 C23 C22 SING N N 30 5X7 C23 N4 SING N N 31 5X7 C17 N4 SING N N 32 5X7 C22 C21 SING N N 33 5X7 N4 C18 SING N N 34 5X7 C21 C20 SING N N 35 5X7 C21 O6 SING N N 36 5X7 C18 C20 SING N N 37 5X7 C18 C19 SING N N 38 5X7 C20 O5 SING N N 39 5X7 C19 O4 SING N N 40 5X7 N3 H1 SING N N 41 5X7 C4 H2 SING N N 42 5X7 C4 H3 SING N N 43 5X7 C4 H4 SING N N 44 5X7 C5 H5 SING N N 45 5X7 C5 H6 SING N N 46 5X7 C7 H7 SING N N 47 5X7 C10 H8 SING N N 48 5X7 C10 H9 SING N N 49 5X7 C13 H10 SING N N 50 5X7 C15 H11 SING N N 51 5X7 C17 H12 SING N N 52 5X7 C17 H13 SING N N 53 5X7 C20 H14 SING N N 54 5X7 C21 H15 SING N N 55 5X7 C22 H16 SING N N 56 5X7 C24 H17 SING N N 57 5X7 C26 H18 SING N N 58 5X7 C26 H19 SING N N 59 5X7 C1 H20 SING N N 60 5X7 C1 H21 SING N N 61 5X7 C1 H22 SING N N 62 5X7 C12 H23 SING N N 63 5X7 C16 H24 SING N N 64 5X7 C18 H25 SING N N 65 5X7 C19 H26 SING N N 66 5X7 C19 H27 SING N N 67 5X7 C2 H28 SING N N 68 5X7 C23 H29 SING N N 69 5X7 C23 H30 SING N N 70 5X7 C25 H31 SING N N 71 5X7 C3 H32 SING N N 72 5X7 O4 H34 SING N N 73 5X7 O5 H35 SING N N 74 5X7 O6 H36 SING N N 75 5X7 O7 H37 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5X7 SMILES ACDLabs 12.01 "CC1CN(CC(C)O1)c1cc([N+]([O-])=O)c(NCc2ccc(CN3CC(O)C(O)C(O)C3CO)cc2)cc1" 5X7 InChI InChI 1.03 "InChI=1S/C26H36N4O7/c1-16-11-28(12-17(2)37-16)20-7-8-21(22(9-20)30(35)36)27-10-18-3-5-19(6-4-18)13-29-14-24(32)26(34)25(33)23(29)15-31/h3-9,16-17,23-27,31-34H,10-15H2,1-2H3/t16-,17+,23-,24+,25-,26-/m1/s1" 5X7 InChIKey InChI 1.03 JOGXSPCVKVNMOH-ROBXLRKYSA-N 5X7 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CN(C[C@H](C)O1)c2ccc(NCc3ccc(CN4C[C@H](O)[C@@H](O)[C@H](O)[C@H]4CO)cc3)c(c2)[N+]([O-])=O" 5X7 SMILES CACTVS 3.385 "C[CH]1CN(C[CH](C)O1)c2ccc(NCc3ccc(CN4C[CH](O)[CH](O)[CH](O)[CH]4CO)cc3)c(c2)[N+]([O-])=O" 5X7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CN(C[C@@H](O1)C)c2ccc(c(c2)[N+](=O)[O-])NCc3ccc(cc3)CN4C[C@@H]([C@H]([C@@H]([C@H]4CO)O)O)O" 5X7 SMILES "OpenEye OEToolkits" 2.0.7 "CC1CN(CC(O1)C)c2ccc(c(c2)[N+](=O)[O-])NCc3ccc(cc3)CN4CC(C(C(C4CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5X7 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S)-1-{[4-({4-[(2R,6S)-2,6-dimethylmorpholin-4-yl]-2-nitroanilino}methyl)phenyl]methyl}-2-(hydroxymethyl)piperidine-3,4,5-triol" 5X7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-1-[[4-[[[4-[(2~{S},6~{R})-2,6-dimethylmorpholin-4-yl]-2-nitro-phenyl]amino]methyl]phenyl]methyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5X7 "Create component" 2021-07-24 RCSB 5X7 "Initial release" 2023-02-22 RCSB #