data_5XI # _chem_comp.id 5XI _chem_comp.name "methyl 4-[4-(3-methyl-2-oxidanylidene-benzimidazol-1-yl)piperidin-1-yl]piperidine-1-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H28 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-08-25 _chem_comp.pdbx_modified_date 2022-05-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 372.461 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5XI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7V6A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5XI C14 C1 C 0 1 N N N 130.790 133.684 152.859 -1.678 1.758 0.010 C14 5XI 1 5XI C13 C2 C 0 1 N N N 129.907 133.894 149.624 1.899 2.910 -0.226 C13 5XI 2 5XI C12 C3 C 0 1 N N N 129.668 133.094 150.920 0.601 2.451 0.442 C12 5XI 3 5XI C16 C4 C 0 1 N N N 131.844 134.174 155.064 -4.064 1.198 -0.472 C16 5XI 4 5XI C17 C5 C 0 1 N N N 130.616 136.023 153.760 -2.900 0.213 1.545 C17 5XI 5 5XI C19 C6 C 0 1 N N N 131.733 136.627 156.057 -4.698 -0.998 0.407 C19 5XI 6 5XI C20 C7 C 0 1 N N N 131.216 138.760 157.030 -6.431 -2.297 -0.594 C20 5XI 7 5XI C11 C8 C 0 1 N N N 132.091 132.803 151.082 0.117 0.950 -1.397 C11 5XI 8 5XI C8 C9 C 0 1 N N N 129.880 134.504 144.231 3.360 -0.968 2.962 C8 5XI 9 5XI C6 C10 C 0 1 Y N N 131.901 135.261 147.150 3.047 -0.668 -0.675 C6 5XI 10 5XI C7 C11 C 0 1 N N N 130.347 133.833 146.574 2.860 0.641 1.110 C7 5XI 11 5XI C2 C12 C 0 1 Y N N 133.498 137.101 146.987 3.404 -2.595 -2.052 C2 5XI 12 5XI C5 C13 C 0 1 Y N N 131.537 135.509 145.869 3.303 -1.438 0.462 C5 5XI 13 5XI C4 C14 C 0 1 Y N N 132.133 136.550 145.125 3.609 -2.784 0.330 C4 5XI 14 5XI C3 C15 C 0 1 Y N N 133.120 137.353 145.694 3.658 -3.358 -0.925 C3 5XI 15 5XI C1 C16 C 0 1 Y N N 132.912 136.085 147.729 3.105 -1.253 -1.931 C1 5XI 16 5XI C10 C17 C 0 1 N N N 132.221 133.618 149.763 1.401 1.364 -2.120 C10 5XI 17 5XI C15 C18 C 0 1 N N N 131.943 133.377 153.746 -2.698 1.491 -1.099 C15 5XI 18 5XI C18 C19 C 0 1 N N N 130.773 135.154 152.511 -1.547 0.517 0.895 C18 5XI 19 5XI C9 C20 C 0 1 N N N 131.086 133.433 148.949 2.454 1.772 -1.086 C9 5XI 20 5XI N1 N1 N 0 1 N N N 130.567 134.604 145.534 3.177 -0.589 1.559 N1 5XI 21 5XI N2 N2 N 0 1 N N N 131.144 134.197 147.575 2.774 0.624 -0.234 N2 5XI 22 5XI N3 N3 N 0 1 N N N 130.818 132.913 151.732 -0.374 2.072 -0.588 N3 5XI 23 5XI N4 N4 N 0 1 N N N 131.682 135.736 154.873 -3.916 0.097 0.490 N4 5XI 24 5XI O1 O1 O 0 1 N N N 129.563 132.939 146.614 2.678 1.618 1.812 O1 5XI 25 5XI O2 O2 O 0 1 N N N 131.753 136.166 157.130 -4.567 -1.901 1.209 O2 5XI 26 5XI O3 O3 O 0 1 N N N 131.741 138.049 155.895 -5.625 -1.090 -0.565 O3 5XI 27 5XI H1 H1 H 0 1 N N N 129.870 133.470 153.422 -2.013 2.602 0.615 H1 5XI 28 5XI H2 H2 H 0 1 N N N 130.028 134.958 149.875 1.698 3.777 -0.855 H2 5XI 29 5XI H3 H3 H 0 1 N N N 129.040 133.770 148.959 2.628 3.177 0.540 H3 5XI 30 5XI H4 H4 H 0 1 N N N 128.910 133.625 151.515 0.805 1.592 1.082 H4 5XI 31 5XI H5 H5 H 0 1 N N N 129.286 132.100 150.643 0.195 3.264 1.045 H5 5XI 32 5XI H6 H6 H 0 1 N N N 130.973 133.804 155.625 -4.428 2.087 0.043 H6 5XI 33 5XI H7 H7 H 0 1 N N N 132.760 133.992 155.646 -4.770 0.912 -1.251 H7 5XI 34 5XI H8 H8 H 0 1 N N N 130.703 137.078 153.461 -2.838 -0.725 2.097 H8 5XI 35 5XI H9 H9 H 0 1 N N N 129.617 135.843 154.183 -3.171 1.020 2.226 H9 5XI 36 5XI H10 H10 H 0 1 N N N 131.253 139.842 156.835 -7.137 -2.243 -1.424 H10 5XI 37 5XI H11 H11 H 0 1 N N N 130.174 138.455 157.204 -5.783 -3.164 -0.724 H11 5XI 38 5XI H12 H12 H 0 1 N N N 131.819 138.527 157.920 -6.980 -2.391 0.343 H12 5XI 39 5XI H13 H13 H 0 1 N N N 132.266 131.742 150.848 -0.639 0.672 -2.131 H13 5XI 40 5XI H14 H14 H 0 1 N N N 132.864 133.156 151.780 0.324 0.098 -0.749 H14 5XI 41 5XI H15 H15 H 0 1 N N N 129.151 133.681 144.262 4.404 -0.828 3.243 H15 5XI 42 5XI H16 H16 H 0 1 N N N 129.357 135.448 144.019 2.727 -0.344 3.592 H16 5XI 43 5XI H17 H17 H 0 1 N N N 130.620 134.309 143.441 3.085 -2.014 3.094 H17 5XI 44 5XI H18 H18 H 0 1 N N N 134.269 137.707 147.439 3.450 -3.050 -3.030 H18 5XI 45 5XI H19 H19 H 0 1 N N N 131.822 136.726 144.106 3.807 -3.382 1.207 H19 5XI 46 5XI H20 H20 H 0 1 N N N 133.575 138.154 145.130 3.896 -4.406 -1.027 H20 5XI 47 5XI H21 H21 H 0 1 N N N 133.223 135.917 148.750 2.913 -0.660 -2.813 H21 5XI 48 5XI H22 H22 H 0 1 N N N 133.115 133.282 149.218 1.774 0.525 -2.708 H22 5XI 49 5XI H23 H23 H 0 1 N N N 132.320 134.686 150.007 1.192 2.206 -2.780 H23 5XI 50 5XI H24 H24 H 0 1 N N N 131.947 132.301 153.974 -2.773 2.367 -1.743 H24 5XI 51 5XI H25 H25 H 0 1 N N N 132.877 133.646 153.231 -2.376 0.632 -1.689 H25 5XI 52 5XI H26 H26 H 0 1 N N N 131.718 135.414 152.011 -1.236 -0.333 0.287 H26 5XI 53 5XI H27 H27 H 0 1 N N N 129.931 135.351 151.830 -0.804 0.700 1.671 H27 5XI 54 5XI H28 H28 H 0 1 N N N 130.972 132.363 148.722 3.356 2.109 -1.598 H28 5XI 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5XI C8 N1 SING N N 1 5XI C4 C3 DOUB Y N 2 5XI C4 C5 SING Y N 3 5XI N1 C5 SING N N 4 5XI N1 C7 SING N N 5 5XI C3 C2 SING Y N 6 5XI C5 C6 DOUB Y N 7 5XI C7 O1 DOUB N N 8 5XI C7 N2 SING N N 9 5XI C2 C1 DOUB Y N 10 5XI C6 N2 SING N N 11 5XI C6 C1 SING Y N 12 5XI N2 C9 SING N N 13 5XI C9 C13 SING N N 14 5XI C9 C10 SING N N 15 5XI C13 C12 SING N N 16 5XI C10 C11 SING N N 17 5XI C12 N3 SING N N 18 5XI C11 N3 SING N N 19 5XI N3 C14 SING N N 20 5XI C18 C14 SING N N 21 5XI C18 C17 SING N N 22 5XI C14 C15 SING N N 23 5XI C15 C16 SING N N 24 5XI C17 N4 SING N N 25 5XI N4 C16 SING N N 26 5XI N4 C19 SING N N 27 5XI O3 C19 SING N N 28 5XI O3 C20 SING N N 29 5XI C19 O2 DOUB N N 30 5XI C14 H1 SING N N 31 5XI C13 H2 SING N N 32 5XI C13 H3 SING N N 33 5XI C12 H4 SING N N 34 5XI C12 H5 SING N N 35 5XI C16 H6 SING N N 36 5XI C16 H7 SING N N 37 5XI C17 H8 SING N N 38 5XI C17 H9 SING N N 39 5XI C20 H10 SING N N 40 5XI C20 H11 SING N N 41 5XI C20 H12 SING N N 42 5XI C11 H13 SING N N 43 5XI C11 H14 SING N N 44 5XI C8 H15 SING N N 45 5XI C8 H16 SING N N 46 5XI C8 H17 SING N N 47 5XI C2 H18 SING N N 48 5XI C4 H19 SING N N 49 5XI C3 H20 SING N N 50 5XI C1 H21 SING N N 51 5XI C10 H22 SING N N 52 5XI C10 H23 SING N N 53 5XI C15 H24 SING N N 54 5XI C15 H25 SING N N 55 5XI C18 H26 SING N N 56 5XI C18 H27 SING N N 57 5XI C9 H28 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5XI InChI InChI 1.03 "InChI=1S/C20H28N4O3/c1-21-17-5-3-4-6-18(17)24(19(21)25)16-9-11-22(12-10-16)15-7-13-23(14-8-15)20(26)27-2/h3-6,15-16H,7-14H2,1-2H3" 5XI InChIKey InChI 1.03 LFVHMTNJDWYMGD-UHFFFAOYSA-N 5XI SMILES_CANONICAL CACTVS 3.385 "COC(=O)N1CCC(CC1)N2CCC(CC2)N3C(=O)N(C)c4ccccc34" 5XI SMILES CACTVS 3.385 "COC(=O)N1CCC(CC1)N2CCC(CC2)N3C(=O)N(C)c4ccccc34" 5XI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2ccccc2N(C1=O)C3CCN(CC3)C4CCN(CC4)C(=O)OC" 5XI SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2ccccc2N(C1=O)C3CCN(CC3)C4CCN(CC4)C(=O)OC" # _pdbx_chem_comp_identifier.comp_id 5XI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl 4-[4-(3-methyl-2-oxidanylidene-benzimidazol-1-yl)piperidin-1-yl]piperidine-1-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5XI "Create component" 2021-08-25 PDBJ 5XI "Initial release" 2022-05-11 RCSB ##