data_5Y1 # _chem_comp.id 5Y1 _chem_comp.name "(5R)-5-hydroxy-16,21-dioxa-3,8,28-triazatetracyclo[20.3.1.1~2,6~.1~11,15~]octacosa-1(26),2,6(28),11(27),12,14,22,24-octaene-4,7-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H23 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-27 _chem_comp.pdbx_modified_date 2022-07-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 421.446 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5Y1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RKP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5Y1 C6 C1 C 0 1 Y N N 10.523 40.192 -11.416 -4.849 -0.210 -0.111 C6 5Y1 1 5Y1 C4 C2 C 0 1 Y N N 12.628 41.245 -11.898 -3.828 1.900 0.394 C4 5Y1 2 5Y1 C3 C3 C 0 1 N N N 13.453 42.231 -12.722 -2.642 2.687 0.891 C3 5Y1 3 5Y1 C2 C4 C 0 1 N N N 13.226 41.931 -14.201 -1.658 2.913 -0.257 C2 5Y1 4 5Y1 C1 C5 C 0 1 N N N 14.900 42.061 -16.170 0.743 2.738 -0.249 C1 5Y1 5 5Y1 C10 C6 C 0 1 N N N 14.733 40.624 -16.688 2.009 1.964 -0.200 C10 5Y1 6 5Y1 C11 C7 C 0 1 N N N 13.753 38.515 -16.635 3.162 -0.050 -0.078 C11 5Y1 7 5Y1 C12 C8 C 0 1 Y N N 12.758 37.559 -15.982 3.043 -1.522 -0.067 C12 5Y1 8 5Y1 C13 C9 C 0 1 Y N N 13.225 36.432 -15.327 4.190 -2.323 -0.084 C13 5Y1 9 5Y1 C14 C10 C 0 1 Y N N 12.330 35.559 -14.725 4.069 -3.696 -0.081 C14 5Y1 10 5Y1 C15 C11 C 0 1 Y N N 10.968 35.823 -14.777 2.817 -4.287 -0.055 C15 5Y1 11 5Y1 C16 C12 C 0 1 Y N N 10.502 36.954 -15.427 1.674 -3.500 -0.029 C16 5Y1 12 5Y1 C17 C13 C 0 1 N N N 8.772 38.547 -15.655 -0.677 -3.193 -0.011 C17 5Y1 13 5Y1 C18 C14 C 0 1 N N N 7.531 38.864 -14.823 -1.934 -3.937 0.443 C18 5Y1 14 5Y1 C19 C15 C 0 1 N N N 7.905 39.840 -13.710 -3.156 -3.349 -0.268 C19 5Y1 15 5Y1 C20 C16 C 0 1 N N N 8.886 39.171 -12.748 -3.717 -2.191 0.558 C20 5Y1 16 5Y1 C21 C17 C 0 1 Y N N 11.399 37.822 -16.028 1.781 -2.120 -0.038 C21 5Y1 17 5Y1 C22 C18 C 0 1 N N R 15.492 40.217 -17.737 3.352 2.672 -0.229 C22 5Y1 18 5Y1 C23 C19 C 0 1 N N N 15.373 38.956 -18.223 4.577 1.789 -0.083 C23 5Y1 19 5Y1 C5 C20 C 0 1 Y N N 11.276 41.089 -12.161 -3.761 0.520 0.345 C5 5Y1 20 5Y1 C7 C21 C 0 1 Y N N 11.127 39.452 -10.408 -6.002 0.447 -0.517 C7 5Y1 21 5Y1 C8 C22 C 0 1 Y N N 12.479 39.610 -10.148 -6.067 1.827 -0.467 C8 5Y1 22 5Y1 C9 C23 C 0 1 Y N N 13.226 40.505 -10.894 -4.978 2.550 -0.016 C9 5Y1 23 5Y1 N1 N1 N 0 1 N N N 14.199 42.632 -15.022 -0.441 2.105 -0.022 N1 5Y1 24 5Y1 N2 N2 N 0 1 N N N 13.878 39.770 -16.154 2.016 0.663 -0.124 N2 5Y1 25 5Y1 N3 N3 N 0 1 N N N 14.514 38.113 -17.677 4.370 0.465 -0.043 N3 5Y1 26 5Y1 O1 O1 O 0 1 N N N 15.666 42.763 -16.739 0.764 3.928 -0.490 O1 5Y1 27 5Y1 O2 O2 O 0 1 N N N 9.125 37.205 -15.470 0.444 -4.080 0.009 O2 5Y1 28 5Y1 O3 O3 O 0 1 N N N 9.158 40.033 -11.680 -4.789 -1.568 -0.153 O3 5Y1 29 5Y1 O4 O4 O 0 1 N N N 16.405 41.105 -18.322 3.371 3.634 0.828 O4 5Y1 30 5Y1 O5 O5 O 0 1 N N N 16.042 38.610 -19.139 5.694 2.259 -0.007 O5 5Y1 31 5Y1 H1 H1 H 0 1 N N N 14.520 42.117 -12.479 -2.980 3.649 1.275 H1 5Y1 32 5Y1 H2 H2 H 0 1 N N N 13.134 43.260 -12.498 -2.147 2.132 1.688 H2 5Y1 33 5Y1 H3 H3 H 0 1 N N N 12.214 42.255 -14.484 -2.119 2.612 -1.197 H3 5Y1 34 5Y1 H4 H4 H 0 1 N N N 13.325 40.848 -14.369 -1.391 3.969 -0.304 H4 5Y1 35 5Y1 H5 H5 H 0 1 N N N 14.286 36.232 -15.285 5.168 -1.866 -0.099 H5 5Y1 36 5Y1 H6 H6 H 0 1 N N N 12.692 34.677 -14.218 4.955 -4.314 -0.100 H6 5Y1 37 5Y1 H7 H7 H 0 1 N N N 10.270 35.145 -14.309 2.730 -5.363 -0.055 H7 5Y1 38 5Y1 H8 H8 H 0 1 N N N 9.603 39.193 -15.335 -0.824 -2.817 -1.023 H8 5Y1 39 5Y1 H9 H9 H 0 1 N N N 8.557 38.727 -16.719 -0.488 -2.356 0.661 H9 5Y1 40 5Y1 H10 H10 H 0 1 N N N 6.763 39.318 -15.467 -1.841 -4.994 0.194 H10 5Y1 41 5Y1 H11 H11 H 0 1 N N N 7.138 37.936 -14.381 -2.053 -3.826 1.521 H11 5Y1 42 5Y1 H12 H12 H 0 1 N N N 8.374 40.733 -14.149 -2.863 -2.985 -1.253 H12 5Y1 43 5Y1 H13 H13 H 0 1 N N N 6.998 40.134 -13.162 -3.918 -4.121 -0.378 H13 5Y1 44 5Y1 H14 H14 H 0 1 N N N 8.444 38.240 -12.364 -4.086 -2.570 1.511 H14 5Y1 45 5Y1 H15 H15 H 0 1 N N N 9.821 38.941 -13.280 -2.930 -1.459 0.740 H15 5Y1 46 5Y1 H16 H16 H 0 1 N N N 11.038 38.705 -16.533 0.892 -1.508 -0.022 H16 5Y1 47 5Y1 H17 H17 H 0 1 N N N 14.713 40.559 -18.434 3.432 3.209 -1.174 H17 5Y1 48 5Y1 H18 H18 H 0 1 N N N 10.808 41.665 -12.946 -2.863 0.011 0.663 H18 5Y1 49 5Y1 H19 H19 H 0 1 N N N 10.543 38.754 -9.827 -6.849 -0.120 -0.872 H19 5Y1 50 5Y1 H20 H20 H 0 1 N N N 12.949 39.035 -9.364 -6.965 2.338 -0.781 H20 5Y1 51 5Y1 H21 H21 H 0 1 N N N 14.280 40.626 -10.691 -5.026 3.629 0.017 H21 5Y1 52 5Y1 H22 H22 H 0 1 N N N 14.405 43.581 -14.782 -0.484 1.182 0.275 H22 5Y1 53 5Y1 H23 H23 H 0 1 N N N 16.359 41.944 -17.880 4.194 4.137 0.887 H23 5Y1 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5Y1 O5 C23 DOUB N N 1 5Y1 O4 C22 SING N N 2 5Y1 C23 C22 SING N N 3 5Y1 C23 N3 SING N N 4 5Y1 C22 C10 SING N N 5 5Y1 N3 C11 DOUB N N 6 5Y1 O1 C1 DOUB N N 7 5Y1 C10 C1 SING N N 8 5Y1 C10 N2 DOUB N N 9 5Y1 C11 N2 SING N N 10 5Y1 C11 C12 SING N N 11 5Y1 C1 N1 SING N N 12 5Y1 C21 C12 DOUB Y N 13 5Y1 C21 C16 SING Y N 14 5Y1 C12 C13 SING Y N 15 5Y1 C17 O2 SING N N 16 5Y1 C17 C18 SING N N 17 5Y1 O2 C16 SING N N 18 5Y1 C16 C15 DOUB Y N 19 5Y1 C13 C14 DOUB Y N 20 5Y1 N1 C2 SING N N 21 5Y1 C18 C19 SING N N 22 5Y1 C15 C14 SING Y N 23 5Y1 C2 C3 SING N N 24 5Y1 C19 C20 SING N N 25 5Y1 C20 O3 SING N N 26 5Y1 C3 C4 SING N N 27 5Y1 C5 C4 DOUB Y N 28 5Y1 C5 C6 SING Y N 29 5Y1 C4 C9 SING Y N 30 5Y1 O3 C6 SING N N 31 5Y1 C6 C7 DOUB Y N 32 5Y1 C9 C8 DOUB Y N 33 5Y1 C7 C8 SING Y N 34 5Y1 C3 H1 SING N N 35 5Y1 C3 H2 SING N N 36 5Y1 C2 H3 SING N N 37 5Y1 C2 H4 SING N N 38 5Y1 C13 H5 SING N N 39 5Y1 C14 H6 SING N N 40 5Y1 C15 H7 SING N N 41 5Y1 C17 H8 SING N N 42 5Y1 C17 H9 SING N N 43 5Y1 C18 H10 SING N N 44 5Y1 C18 H11 SING N N 45 5Y1 C19 H12 SING N N 46 5Y1 C19 H13 SING N N 47 5Y1 C20 H14 SING N N 48 5Y1 C20 H15 SING N N 49 5Y1 C21 H16 SING N N 50 5Y1 C22 H17 SING N N 51 5Y1 C5 H18 SING N N 52 5Y1 C7 H19 SING N N 53 5Y1 C8 H20 SING N N 54 5Y1 C9 H21 SING N N 55 5Y1 N1 H22 SING N N 56 5Y1 O4 H23 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5Y1 SMILES ACDLabs 12.01 "O=C1NCCc2cc(ccc2)OCCCCOc2cccc(c2)C=2N=C1C(O)C(=O)N=2" 5Y1 InChI InChI 1.03 "InChI=1S/C23H23N3O5/c27-20-19-22(28)24-10-9-15-5-3-7-17(13-15)30-11-1-2-12-31-18-8-4-6-16(14-18)21(25-19)26-23(20)29/h3-8,13-14,20,27H,1-2,9-12H2,(H,24,28)" 5Y1 InChIKey InChI 1.03 HUEWTLLMWLXBIR-UHFFFAOYSA-N 5Y1 SMILES_CANONICAL CACTVS 3.385 "O[C@H]1C(=O)N=C2N=C1C(=O)NCCc3cccc(OCCCCOc4cccc2c4)c3" 5Y1 SMILES CACTVS 3.385 "O[CH]1C(=O)N=C2N=C1C(=O)NCCc3cccc(OCCCCOc4cccc2c4)c3" 5Y1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2cc(c1)OCCCCOc3cccc(c3)C4=NC(=O)C(C(=N4)C(=O)NCC2)O" 5Y1 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2cc(c1)OCCCCOc3cccc(c3)C4=NC(=O)C(C(=N4)C(=O)NCC2)O" # _pdbx_chem_comp_identifier.comp_id 5Y1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(5R)-5-hydroxy-16,21-dioxa-3,8,28-triazatetracyclo[20.3.1.1~2,6~.1~11,15~]octacosa-1(26),2,6(28),11(27),12,14,22,24-octaene-4,7-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5Y1 "Create component" 2021-07-27 RCSB 5Y1 "Initial release" 2022-07-27 RCSB #