data_5YH # _chem_comp.id 5YH _chem_comp.name "1-[(2R)-3-[3,6-bis(fluoranyl)carbazol-9-yl]-2-oxidanyl-propyl]imidazolidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H17 F2 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-08-25 _chem_comp.pdbx_modified_date 2022-08-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 345.343 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5YH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7V8Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5YH C10 C1 C 0 1 N N N -7.083 28.873 -13.174 0.557 0.146 -1.590 C10 5YH 1 5YH C13 C2 C 0 1 Y N N -9.249 27.429 -11.346 -1.313 2.541 -0.710 C13 5YH 2 5YH C15 C3 C 0 1 Y N N -9.839 27.191 -9.033 -3.421 2.970 0.362 C15 5YH 3 5YH C17 C4 C 0 1 Y N N -8.805 27.993 -8.582 -3.633 1.615 0.518 C17 5YH 4 5YH C20 C5 C 0 1 Y N N -6.296 29.589 -10.841 -1.380 -1.097 -0.549 C20 5YH 5 5YH C21 C6 C 0 1 Y N N -5.153 30.404 -11.123 -1.029 -2.436 -0.683 C21 5YH 6 5YH C22 C7 C 0 1 Y N N -4.460 30.970 -10.047 -1.871 -3.422 -0.215 C22 5YH 7 5YH C24 C8 C 0 1 Y N N -6.022 29.932 -8.409 -3.439 -1.768 0.536 C24 5YH 8 5YH C02 C9 C 0 1 N N R -8.236 29.841 -13.739 1.670 0.215 -0.542 C02 5YH 9 5YH C03 C10 C 0 1 N N N -8.289 29.861 -15.292 3.016 0.414 -1.240 C03 5YH 10 5YH C05 C11 C 0 1 N N N -10.326 31.347 -15.601 4.562 1.706 0.418 C05 5YH 11 5YH C06 C12 C 0 1 N N N -11.712 31.164 -16.297 5.671 1.212 1.367 C06 5YH 12 5YH C08 C13 C 0 1 N N N -10.444 29.210 -16.529 4.773 -0.568 0.231 C08 5YH 13 5YH C12 C14 C 0 1 Y N N -8.151 28.240 -10.944 -1.510 1.171 -0.561 C12 5YH 14 5YH C14 C15 C 0 1 Y N N -10.134 26.890 -10.369 -2.263 3.429 -0.251 C14 5YH 15 5YH C18 C16 C 0 1 Y N N -7.905 28.505 -9.549 -2.680 0.708 0.058 C18 5YH 16 5YH C19 C17 C 0 1 Y N N -6.731 29.357 -9.487 -2.596 -0.764 0.066 C19 5YH 17 5YH C23 C18 C 0 1 Y N N -4.938 30.703 -8.749 -3.074 -3.092 0.394 C23 5YH 18 5YH F16 F1 F 0 1 N N N -10.724 26.740 -8.069 -4.342 3.852 0.806 F16 5YH 19 5YH F25 F2 F 0 1 N N N -4.276 31.248 -7.684 -3.889 -4.068 0.848 F25 5YH 20 5YH N04 N1 N 0 1 N N N -9.615 30.103 -15.784 4.082 0.479 -0.236 N04 5YH 21 5YH N07 N2 N 0 1 N N N -11.682 29.833 -16.847 5.699 -0.242 1.150 N07 5YH 22 5YH N11 N3 N 0 1 Y N N -7.166 28.888 -11.697 -0.743 0.076 -0.919 N11 5YH 23 5YH O01 O1 O 0 1 N N N -7.992 31.206 -13.332 1.696 -1.003 0.205 O01 5YH 24 5YH O09 O2 O 0 1 N N N -10.137 28.064 -16.860 4.579 -1.710 -0.141 O09 5YH 25 5YH H1 H1 H 0 1 N N N -7.237 27.850 -13.547 0.594 1.037 -2.218 H1 5YH 26 5YH H2 H2 H 0 1 N N N -6.097 29.237 -13.497 0.695 -0.740 -2.209 H2 5YH 27 5YH H3 H3 H 0 1 N N N -9.411 27.222 -12.393 -0.414 2.908 -1.181 H3 5YH 28 5YH H4 H4 H 0 1 N N N -8.689 28.220 -7.533 -4.534 1.259 0.995 H4 5YH 29 5YH H5 H5 H 0 1 N N N -4.834 30.577 -12.140 -0.095 -2.704 -1.156 H5 5YH 30 5YH H6 H6 H 0 1 N N N -3.590 31.589 -10.206 -1.592 -4.460 -0.323 H6 5YH 31 5YH H7 H7 H 0 1 N N N -6.314 29.775 -7.381 -4.375 -1.512 1.010 H7 5YH 32 5YH H8 H8 H 0 1 N N N -9.204 29.490 -13.352 1.483 1.051 0.132 H8 5YH 33 5YH H9 H9 H 0 1 N N N -7.942 28.888 -15.671 3.203 -0.422 -1.914 H9 5YH 34 5YH H10 H10 H 0 1 N N N -7.624 30.656 -15.659 2.996 1.343 -1.810 H10 5YH 35 5YH H11 H11 H 0 1 N N N -9.772 32.175 -16.067 3.757 2.178 0.982 H11 5YH 36 5YH H12 H12 H 0 1 N N N -10.462 31.554 -14.529 4.969 2.398 -0.319 H12 5YH 37 5YH H13 H13 H 0 1 N N N -11.845 31.909 -17.095 6.629 1.657 1.100 H13 5YH 38 5YH H14 H14 H 0 1 N N N -10.985 26.283 -10.643 -2.104 4.490 -0.370 H14 5YH 39 5YH H15 H15 H 0 1 N N N -7.950 31.252 -12.384 1.858 -1.791 -0.332 H15 5YH 40 5YH H16 H16 H 0 1 N N N -12.528 31.261 -15.565 5.419 1.441 2.402 H16 5YH 41 5YH H17 H17 H 0 1 N N N -12.420 29.411 -17.373 6.291 -0.867 1.597 H17 5YH 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5YH O09 C08 DOUB N N 1 5YH N07 C08 SING N N 2 5YH N07 C06 SING N N 3 5YH C08 N04 SING N N 4 5YH C06 C05 SING N N 5 5YH N04 C05 SING N N 6 5YH N04 C03 SING N N 7 5YH C03 C02 SING N N 8 5YH C02 O01 SING N N 9 5YH C02 C10 SING N N 10 5YH C10 N11 SING N N 11 5YH N11 C12 SING Y N 12 5YH N11 C20 SING Y N 13 5YH C13 C12 DOUB Y N 14 5YH C13 C14 SING Y N 15 5YH C21 C20 SING Y N 16 5YH C21 C22 DOUB Y N 17 5YH C12 C18 SING Y N 18 5YH C20 C19 DOUB Y N 19 5YH C14 C15 DOUB Y N 20 5YH C22 C23 SING Y N 21 5YH C18 C19 SING Y N 22 5YH C18 C17 DOUB Y N 23 5YH C19 C24 SING Y N 24 5YH C15 C17 SING Y N 25 5YH C15 F16 SING N N 26 5YH C23 C24 DOUB Y N 27 5YH C23 F25 SING N N 28 5YH C10 H1 SING N N 29 5YH C10 H2 SING N N 30 5YH C13 H3 SING N N 31 5YH C17 H4 SING N N 32 5YH C21 H5 SING N N 33 5YH C22 H6 SING N N 34 5YH C24 H7 SING N N 35 5YH C02 H8 SING N N 36 5YH C03 H9 SING N N 37 5YH C03 H10 SING N N 38 5YH C05 H11 SING N N 39 5YH C05 H12 SING N N 40 5YH C06 H13 SING N N 41 5YH C14 H14 SING N N 42 5YH O01 H15 SING N N 43 5YH C06 H16 SING N N 44 5YH N07 H17 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5YH InChI InChI 1.03 "InChI=1S/C18H17F2N3O2/c19-11-1-3-16-14(7-11)15-8-12(20)2-4-17(15)23(16)10-13(24)9-22-6-5-21-18(22)25/h1-4,7-8,13,24H,5-6,9-10H2,(H,21,25)/t13-/m0/s1" 5YH InChIKey InChI 1.03 MUVYYQQLOKRDQS-ZDUSSCGKSA-N 5YH SMILES_CANONICAL CACTVS 3.385 "O[C@@H](CN1CCNC1=O)Cn2c3ccc(F)cc3c4cc(F)ccc24" 5YH SMILES CACTVS 3.385 "O[CH](CN1CCNC1=O)Cn2c3ccc(F)cc3c4cc(F)ccc24" 5YH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1F)c3cc(ccc3n2C[C@H](CN4CCNC4=O)O)F" 5YH SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1F)c3cc(ccc3n2CC(CN4CCNC4=O)O)F" # _pdbx_chem_comp_identifier.comp_id 5YH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(2~{R})-3-[3,6-bis(fluoranyl)carbazol-9-yl]-2-oxidanyl-propyl]imidazolidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5YH "Create component" 2021-08-25 PDBJ 5YH "Initial release" 2022-08-24 RCSB #