data_5YI
#
_chem_comp.id 5YI
_chem_comp.name "(1R,2Z,3R,5E,7E)-17-{(1S)-1-[(2-ethyl-2-hydroxybutyl)sulfanyl]ethyl}-2-(2-hydroxyethylidene)-9,10-secoestra-5,7,16-triene-1,3-diol"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H44 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-06-04
_chem_comp.pdbx_modified_date 2013-05-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 476.712
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5YI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3VT4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5YI C12 C12 C 0 1 N N N 13.443 10.056 27.340 -1.249 3.010 -0.233 C12 5YI 1
5YI C13 C13 C 0 1 N N S 13.322 8.909 26.272 -1.140 1.516 -0.154 C13 5YI 2
5YI C14 C14 C 0 1 N N S 14.608 8.960 25.391 -0.102 1.155 0.946 C14 5YI 3
5YI C15 C15 C 0 1 N N N 14.534 7.642 24.611 -0.357 -0.353 1.000 C15 5YI 4
5YI C16 C16 C 0 1 N N N 14.195 6.736 25.826 -1.863 -0.441 0.771 C16 5YI 5
5YI C21 C21 C 0 1 N N N 13.501 5.505 28.404 -4.254 2.081 0.637 C21 5YI 6
5YI C23 C23 C 0 1 N N N 10.544 5.942 27.021 -6.371 -0.063 -0.561 C23 5YI 7
5YI C24 C24 C 0 1 N N N 9.636 4.764 27.462 -7.352 -1.223 -0.383 C24 5YI 8
5YI C29 C29 C 0 1 N N N 7.709 6.606 27.936 -7.873 -0.518 1.956 C29 5YI 9
5YI C27 C27 C 0 1 N N N 8.477 5.315 28.348 -7.361 -1.664 1.082 C27 5YI 10
5YI C26 C26 C 0 1 N N N 9.175 3.992 26.167 -8.757 -0.769 -0.788 C26 5YI 11
5YI C28 C28 C 0 1 N N N 7.966 4.471 25.346 -9.759 -1.888 -0.493 C28 5YI 12
5YI O03 O03 O 0 1 N N N 10.421 3.862 28.253 -6.950 -2.319 -1.208 O03 5YI 13
5YI S22 S22 S 0 1 N N N 11.168 7.044 28.356 -4.740 -0.550 0.067 S22 5YI 14
5YI C20 C20 C 0 1 N N S 13.006 6.941 28.177 -3.732 0.930 -0.226 C20 5YI 15
5YI C17 C17 C 0 1 N N N 13.514 7.457 26.771 -2.298 0.641 0.137 C17 5YI 16
5YI C18 C18 C 0 1 N N N 11.908 8.979 25.561 -0.534 1.036 -1.474 C18 5YI 17
5YI C11 C11 C 0 1 N N N 13.571 11.478 26.692 0.087 3.542 -0.782 C11 5YI 18
5YI C09 C09 C 0 1 N N N 14.649 11.541 25.581 1.273 3.110 0.077 C09 5YI 19
5YI C08 C08 C 0 1 N N N 14.577 10.332 24.601 1.208 1.636 0.393 C08 5YI 20
5YI C07 C07 C 0 1 N N N 14.478 10.463 23.204 2.239 0.827 0.175 C07 5YI 21
5YI C06 C06 C 0 1 N N N 14.427 11.718 22.522 3.536 1.384 -0.240 C06 5YI 22
5YI C05 C05 C 0 1 N N N 14.205 11.907 21.151 4.537 0.571 -0.560 C05 5YI 23
5YI C10 C10 C 0 1 N N N 13.977 10.738 20.149 5.913 1.122 -0.853 C10 5YI 24
5YI C01 C01 C 0 1 N N R 14.651 10.951 18.757 6.925 0.431 0.071 C01 5YI 25
5YI O01 O01 O 0 1 N N N 14.101 10.006 17.819 6.731 0.878 1.414 O01 5YI 26
5YI C04 C04 C 0 1 N N N 14.181 13.379 20.638 4.320 -0.924 -0.632 C04 5YI 27
5YI C03 C03 C 0 1 N N R 14.882 13.558 19.273 5.335 -1.610 0.292 C03 5YI 28
5YI O02 O02 O 0 1 N N N 16.276 13.481 19.476 5.322 -3.020 0.055 O02 5YI 29
5YI C02 C02 C 0 1 N N N 14.447 12.430 18.288 6.706 -1.063 -0.007 C02 5YI 30
5YI C30 C30 C 0 1 N N N 13.891 12.733 17.034 7.693 -1.865 -0.323 C30 5YI 31
5YI C31 C31 C 0 1 N N N 13.643 14.003 16.468 9.093 -1.323 -0.452 C31 5YI 32
5YI O04 O04 O 0 1 N N N 12.876 13.889 15.266 10.002 -2.181 0.241 O04 5YI 33
5YI H1 H1 H 0 1 N N N 12.546 10.039 27.977 -2.062 3.287 -0.904 H1 5YI 34
5YI H2 H2 H 0 1 N N N 14.334 9.869 27.957 -1.432 3.421 0.760 H2 5YI 35
5YI H3 H3 H 0 1 N N N 15.492 8.948 26.045 -0.333 1.634 1.898 H3 5YI 36
5YI H4 H4 H 0 1 N N N 13.739 7.645 23.851 0.186 -0.866 0.206 H4 5YI 37
5YI H5 H5 H 0 1 N N N 15.491 7.376 24.139 -0.089 -0.757 1.976 H5 5YI 38
5YI H6 H6 H 0 1 N N N 14.457 5.692 25.913 -2.487 -1.267 1.080 H6 5YI 39
5YI H8 H8 H 0 1 N N N 13.148 5.145 29.382 -4.194 1.803 1.689 H8 5YI 40
5YI H9 H9 H 0 1 N N N 13.109 4.852 27.610 -3.648 2.970 0.461 H9 5YI 41
5YI H10 H10 H 0 1 N N N 14.601 5.489 28.382 -5.291 2.290 0.374 H10 5YI 42
5YI H11 H11 H 0 1 N N N 11.417 5.516 26.505 -6.293 0.188 -1.619 H11 5YI 43
5YI H12 H12 H 0 1 N N N 9.969 6.562 26.318 -6.729 0.804 -0.007 H12 5YI 44
5YI H13 H13 H 0 1 N N N 6.935 6.828 28.685 -7.948 -0.856 2.990 H13 5YI 45
5YI H14 H14 H 0 1 N N N 8.414 7.449 27.877 -7.181 0.321 1.897 H14 5YI 46
5YI H15 H15 H 0 1 N N N 7.236 6.454 26.955 -8.856 -0.204 1.605 H15 5YI 47
5YI H16 H16 H 0 1 N N N 7.728 4.513 28.421 -8.014 -2.529 1.197 H16 5YI 48
5YI H17 H17 H 0 1 N N N 8.906 5.508 29.343 -6.349 -1.930 1.387 H17 5YI 49
5YI H18 H18 H 0 1 N N N 8.951 2.962 26.480 -9.028 0.121 -0.220 H18 5YI 50
5YI H19 H19 H 0 1 N N N 10.036 3.988 25.482 -8.772 -0.539 -1.853 H19 5YI 51
5YI H20 H20 H 0 1 N N N 7.814 3.798 24.489 -9.487 -2.778 -1.060 H20 5YI 52
5YI H21 H21 H 0 1 N N N 7.067 4.466 25.980 -9.744 -2.117 0.572 H21 5YI 53
5YI H22 H22 H 0 1 N N N 8.152 5.492 24.982 -10.759 -1.564 -0.781 H22 5YI 54
5YI H23 H23 H 0 1 N N N 10.712 4.304 29.042 -6.922 -2.110 -2.152 H23 5YI 55
5YI H24 H24 H 0 1 N N N 13.420 7.593 28.960 -3.792 1.208 -1.278 H24 5YI 56
5YI H26 H26 H 0 1 N N N 11.113 8.931 26.320 -1.214 1.269 -2.293 H26 5YI 57
5YI H27 H27 H 0 1 N N N 11.825 9.923 25.002 0.420 1.538 -1.639 H27 5YI 58
5YI H28 H28 H 0 1 N N N 11.804 8.132 24.867 -0.374 -0.042 -1.430 H28 5YI 59
5YI H29 H29 H 0 1 N N N 13.836 12.199 27.479 0.229 3.167 -1.796 H29 5YI 60
5YI H30 H30 H 0 1 N N N 12.600 11.753 26.254 0.050 4.631 -0.810 H30 5YI 61
5YI H31 H31 H 0 1 N N N 15.642 11.551 26.055 2.199 3.328 -0.455 H31 5YI 62
5YI H32 H32 H 0 1 N N N 14.508 12.468 25.006 1.259 3.667 1.014 H32 5YI 63
5YI H33 H33 H 0 1 N N N 14.438 9.561 22.611 2.126 -0.239 0.303 H33 5YI 64
5YI H34 H34 H 0 1 N N N 14.573 12.605 23.120 3.675 2.454 -0.284 H34 5YI 65
5YI H35 H35 H 0 1 N N N 12.894 10.622 19.994 6.173 0.924 -1.893 H35 5YI 66
5YI H36 H36 H 0 1 N N N 14.385 9.818 20.593 5.923 2.197 -0.671 H36 5YI 67
5YI H37 H37 H 0 1 N N N 15.731 10.775 18.870 7.938 0.670 -0.252 H37 5YI 68
5YI H38 H38 H 0 1 N N N 14.244 9.123 18.138 6.844 1.832 1.532 H38 5YI 69
5YI H39 H39 H 0 1 N N N 14.688 14.016 21.378 3.308 -1.163 -0.305 H39 5YI 70
5YI H40 H40 H 0 1 N N N 13.133 13.697 20.537 4.464 -1.266 -1.656 H40 5YI 71
5YI H41 H41 H 0 1 N N N 14.599 14.532 18.848 5.076 -1.412 1.332 H41 5YI 72
5YI H42 H42 H 0 1 N N N 16.547 14.166 20.076 4.465 -3.438 0.214 H42 5YI 73
5YI H43 H43 H 0 1 N N N 13.618 11.885 16.424 7.503 -2.914 -0.491 H43 5YI 74
5YI H44 H44 H 0 1 N N N 14.603 14.487 16.237 9.369 -1.276 -1.505 H44 5YI 75
5YI H45 H45 H 0 1 N N N 13.087 14.617 17.192 9.137 -0.323 -0.020 H45 5YI 76
5YI H46 H46 H 0 1 N N N 12.722 14.754 14.905 10.924 -1.892 0.200 H46 5YI 77
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5YI O04 C31 SING N N 1
5YI C31 C30 SING N N 2
5YI C30 C02 DOUB N Z 3
5YI O01 C01 SING N N 4
5YI C02 C01 SING N N 5
5YI C02 C03 SING N N 6
5YI C01 C10 SING N N 7
5YI C03 O02 SING N N 8
5YI C03 C04 SING N N 9
5YI C10 C05 SING N N 10
5YI C04 C05 SING N N 11
5YI C05 C06 DOUB N Z 12
5YI C06 C07 SING N N 13
5YI C07 C08 DOUB N E 14
5YI C08 C14 SING N N 15
5YI C08 C09 SING N N 16
5YI C15 C14 SING N N 17
5YI C15 C16 SING N N 18
5YI C28 C26 SING N N 19
5YI C14 C13 SING N N 20
5YI C18 C13 SING N N 21
5YI C09 C11 SING N N 22
5YI C16 C17 DOUB N N 23
5YI C26 C24 SING N N 24
5YI C13 C17 SING N N 25
5YI C13 C12 SING N N 26
5YI C11 C12 SING N N 27
5YI C17 C20 SING N N 28
5YI C23 C24 SING N N 29
5YI C23 S22 SING N N 30
5YI C24 O03 SING N N 31
5YI C24 C27 SING N N 32
5YI C29 C27 SING N N 33
5YI C20 S22 SING N N 34
5YI C20 C21 SING N N 35
5YI C12 H1 SING N N 36
5YI C12 H2 SING N N 37
5YI C14 H3 SING N N 38
5YI C15 H4 SING N N 39
5YI C15 H5 SING N N 40
5YI C16 H6 SING N N 41
5YI C21 H8 SING N N 42
5YI C21 H9 SING N N 43
5YI C21 H10 SING N N 44
5YI C23 H11 SING N N 45
5YI C23 H12 SING N N 46
5YI C29 H13 SING N N 47
5YI C29 H14 SING N N 48
5YI C29 H15 SING N N 49
5YI C27 H16 SING N N 50
5YI C27 H17 SING N N 51
5YI C26 H18 SING N N 52
5YI C26 H19 SING N N 53
5YI C28 H20 SING N N 54
5YI C28 H21 SING N N 55
5YI C28 H22 SING N N 56
5YI O03 H23 SING N N 57
5YI C20 H24 SING N N 58
5YI C18 H26 SING N N 59
5YI C18 H27 SING N N 60
5YI C18 H28 SING N N 61
5YI C11 H29 SING N N 62
5YI C11 H30 SING N N 63
5YI C09 H31 SING N N 64
5YI C09 H32 SING N N 65
5YI C07 H33 SING N N 66
5YI C06 H34 SING N N 67
5YI C10 H35 SING N N 68
5YI C10 H36 SING N N 69
5YI C01 H37 SING N N 70
5YI O01 H38 SING N N 71
5YI C04 H39 SING N N 72
5YI C04 H40 SING N N 73
5YI C03 H41 SING N N 74
5YI O02 H42 SING N N 75
5YI C30 H43 SING N N 76
5YI C31 H44 SING N N 77
5YI C31 H45 SING N N 78
5YI O04 H46 SING N N 79
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5YI SMILES ACDLabs 12.01 "OC3C(=C\CO)\C(O)C\C(=C\C=C1/CCCC2(C(=CCC12)C(SCC(O)(CC)CC)C)C)C3"
5YI InChI InChI 1.03
"InChI=1S/C28H44O4S/c1-5-28(32,6-2)18-33-19(3)23-11-12-24-21(8-7-14-27(23,24)4)10-9-20-16-25(30)22(13-15-29)26(31)17-20/h9-11,13,19,24-26,29-32H,5-8,12,14-18H2,1-4H3/b20-9-,21-10+,22-13+/t19-,24-,25+,26+,27+/m0/s1"
5YI InChIKey InChI 1.03 PIRFBNFXEQEXIT-XXUXJEHWSA-N
5YI SMILES_CANONICAL CACTVS 3.370 "CCC(O)(CC)CS[C@@H](C)C1=CC[C@H]2/C(CCC[C@]12C)=C/C=C3C[C@@H](O)C(=CCO)[C@H](O)C3"
5YI SMILES CACTVS 3.370 "CCC(O)(CC)CS[CH](C)C1=CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C(=CCO)[CH](O)C3"
5YI SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCC(CC)(CS[C@@H](C)C1=CC[C@@H]\2[C@@]1(CCC/C2=C\C=C3C[C@H](C(=CCO)[C@@H](C3)O)O)C)O"
5YI SMILES "OpenEye OEToolkits" 1.7.6 "CCC(CC)(CSC(C)C1=CCC2C1(CCCC2=CC=C3CC(C(=CCO)C(C3)O)O)C)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5YI "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2Z,3R,5E,7E)-17-{(1S)-1-[(2-ethyl-2-hydroxybutyl)sulfanyl]ethyl}-2-(2-hydroxyethylidene)-9,10-secoestra-5,7,16-triene-1,3-diol"
5YI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1R,3R)-5-[(2E)-2-[(3aS,7aS)-1-[(1S)-1-(2-ethyl-2-oxidanyl-butyl)sulfanylethyl]-7a-methyl-3a,5,6,7-tetrahydro-3H-inden-4-ylidene]ethylidene]-2-(2-oxidanylethylidene)cyclohexane-1,3-diol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5YI "Create component" 2012-06-04 PDBJ
5YI "Initial release" 2013-05-22 RCSB
#