data_5YJ # _chem_comp.id 5YJ _chem_comp.name "6-[4-(3,5-dichloro-4-methylphenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H16 Cl2 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-27 _chem_comp.pdbx_modified_date 2021-11-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 383.229 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5YJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RM2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5YJ C1 C1 C 0 1 N N N 110.895 -3.676 108.518 -3.988 0.541 -0.007 C1 5YJ 1 5YJ C10 C2 C 0 1 Y N N 105.173 -2.039 110.688 2.200 0.121 0.562 C10 5YJ 2 5YJ C11 C3 C 0 1 Y N N 104.249 -2.634 109.817 2.977 1.127 0.002 C11 5YJ 3 5YJ C12 C4 C 0 1 Y N N 102.887 -2.370 109.965 4.265 0.852 -0.416 C12 5YJ 4 5YJ C13 C5 C 0 1 Y N N 102.352 -1.528 110.943 4.781 -0.425 -0.278 C13 5YJ 5 5YJ C14 C6 C 0 1 Y N N 103.318 -0.961 111.783 4.009 -1.429 0.279 C14 5YJ 6 5YJ C15 C7 C 0 1 Y N N 104.672 -1.190 111.684 2.720 -1.160 0.700 C15 5YJ 7 5YJ C17 C8 C 0 1 N N N 112.120 -5.756 108.744 -4.991 -0.796 -1.689 C17 5YJ 8 5YJ C2 C9 C 0 1 N N N 110.443 -2.481 109.322 -2.966 1.541 0.386 C2 5YJ 9 5YJ C20 C10 C 0 1 N N N 111.159 -5.078 106.583 -5.850 -0.939 0.481 C20 5YJ 10 5YJ C22 C11 C 0 1 N N N 110.654 -3.876 107.205 -4.852 0.045 0.916 C22 5YJ 11 5YJ C23 C12 C 0 1 N N N 100.893 -1.232 111.114 6.186 -0.721 -0.734 C23 5YJ 12 5YJ C5 C13 C 0 1 N N N 108.861 -1.519 111.022 -1.450 -0.294 0.975 C5 5YJ 13 5YJ C6 C14 C 0 1 N N N 107.443 -1.092 110.682 -0.067 -0.505 0.350 C6 5YJ 14 5YJ C8 C15 C 0 1 N N N 107.044 -3.278 109.690 0.555 1.805 0.751 C8 5YJ 15 5YJ C9 C16 C 0 1 N N N 108.456 -3.702 110.057 -0.806 2.111 1.398 C9 5YJ 16 5YJ N16 N1 N 0 1 N N N 111.608 -4.588 109.249 -4.073 0.109 -1.313 N16 5YJ 17 5YJ N19 N2 N 0 1 N N N 111.864 -5.935 107.412 -5.866 -1.321 -0.813 N19 5YJ 18 5YJ N4 N3 N 0 1 N N N 109.338 -2.538 110.086 -1.788 1.136 0.899 N4 5YJ 19 5YJ N7 N4 N 0 1 N N N 106.555 -2.261 110.618 0.900 0.397 0.990 N7 5YJ 20 5YJ O18 O1 O 0 1 N N N 112.746 -6.561 109.409 -5.033 -1.150 -2.851 O18 5YJ 21 5YJ O21 O2 O 0 1 N N N 111.012 -5.391 105.420 -6.644 -1.409 1.275 O21 5YJ 22 5YJ O3 O3 O 0 1 N N N 111.151 -1.481 109.232 -3.191 2.727 0.244 O3 5YJ 23 5YJ CL24 CL1 CL 0 0 N N N 102.786 0.123 113.064 4.661 -3.030 0.450 CL24 5YJ 24 5YJ CL25 CL2 CL 0 0 N N N 101.788 -3.153 108.826 5.237 2.109 -1.116 CL25 5YJ 25 5YJ H1 H1 H 0 1 N N N 104.591 -3.295 109.034 2.574 2.123 -0.106 H1 5YJ 26 5YJ H2 H2 H 0 1 N N N 105.350 -0.714 112.376 2.119 -1.944 1.135 H2 5YJ 27 5YJ H3 H3 H 0 1 N N N 110.095 -3.152 106.631 -4.806 0.367 1.946 H3 5YJ 28 5YJ H4 H4 H 0 1 N N N 100.448 -1.966 111.802 6.880 -0.548 0.088 H4 5YJ 29 5YJ H5 H5 H 0 1 N N N 100.770 -0.220 111.528 6.253 -1.762 -1.053 H5 5YJ 30 5YJ H6 H6 H 0 1 N N N 100.390 -1.292 110.138 6.443 -0.069 -1.569 H6 5YJ 31 5YJ H7 H7 H 0 1 N N N 108.878 -1.930 112.042 -2.192 -0.875 0.428 H7 5YJ 32 5YJ H8 H8 H 0 1 N N N 109.524 -0.643 110.969 -1.432 -0.610 2.018 H8 5YJ 33 5YJ H9 H9 H 0 1 N N N 107.442 -0.583 109.707 0.246 -1.538 0.499 H9 5YJ 34 5YJ H10 H10 H 0 1 N N N 107.077 -0.402 111.456 -0.114 -0.289 -0.717 H10 5YJ 35 5YJ H11 H11 H 0 1 N N N 107.044 -2.867 108.670 0.498 1.989 -0.322 H11 5YJ 36 5YJ H12 H12 H 0 1 N N N 106.381 -4.155 109.732 1.319 2.446 1.191 H12 5YJ 37 5YJ H13 H13 H 0 1 N N N 108.447 -4.177 111.049 -0.724 2.028 2.481 H13 5YJ 38 5YJ H14 H14 H 0 1 N N N 108.826 -4.420 109.310 -1.121 3.119 1.128 H14 5YJ 39 5YJ H15 H15 H 0 1 N N N 111.766 -4.389 110.216 -3.458 0.466 -1.973 H15 5YJ 40 5YJ H16 H16 H 0 1 N N N 112.222 -6.770 106.994 -6.520 -1.971 -1.116 H16 5YJ 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5YJ O21 C20 DOUB N N 1 5YJ C20 C22 SING N N 2 5YJ C20 N19 SING N N 3 5YJ C22 C1 DOUB N N 4 5YJ N19 C17 SING N N 5 5YJ C1 N16 SING N N 6 5YJ C1 C2 SING N N 7 5YJ C17 N16 SING N N 8 5YJ C17 O18 DOUB N N 9 5YJ CL25 C12 SING N N 10 5YJ O3 C2 DOUB N N 11 5YJ C2 N4 SING N N 12 5YJ C8 C9 SING N N 13 5YJ C8 N7 SING N N 14 5YJ C11 C12 DOUB Y N 15 5YJ C11 C10 SING Y N 16 5YJ C12 C13 SING Y N 17 5YJ C9 N4 SING N N 18 5YJ N4 C5 SING N N 19 5YJ N7 C6 SING N N 20 5YJ N7 C10 SING N N 21 5YJ C6 C5 SING N N 22 5YJ C10 C15 DOUB Y N 23 5YJ C13 C23 SING N N 24 5YJ C13 C14 DOUB Y N 25 5YJ C15 C14 SING Y N 26 5YJ C14 CL24 SING N N 27 5YJ C11 H1 SING N N 28 5YJ C15 H2 SING N N 29 5YJ C22 H3 SING N N 30 5YJ C23 H4 SING N N 31 5YJ C23 H5 SING N N 32 5YJ C23 H6 SING N N 33 5YJ C5 H7 SING N N 34 5YJ C5 H8 SING N N 35 5YJ C6 H9 SING N N 36 5YJ C6 H10 SING N N 37 5YJ C8 H11 SING N N 38 5YJ C8 H12 SING N N 39 5YJ C9 H13 SING N N 40 5YJ C9 H14 SING N N 41 5YJ N16 H15 SING N N 42 5YJ N19 H16 SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5YJ SMILES ACDLabs 12.01 "O=C(C1=CC(=O)NC(=O)N1)N1CCN(CC1)c1cc(Cl)c(C)c(Cl)c1" 5YJ InChI InChI 1.03 "InChI=1S/C16H16Cl2N4O3/c1-9-11(17)6-10(7-12(9)18)21-2-4-22(5-3-21)15(24)13-8-14(23)20-16(25)19-13/h6-8H,2-5H2,1H3,(H2,19,20,23,25)" 5YJ InChIKey InChI 1.03 HKYIVHLRSLTYKM-UHFFFAOYSA-N 5YJ SMILES_CANONICAL CACTVS 3.385 "Cc1c(Cl)cc(cc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3" 5YJ SMILES CACTVS 3.385 "Cc1c(Cl)cc(cc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3" 5YJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(cc(cc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)Cl" 5YJ SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(cc(cc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)Cl" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5YJ "SYSTEMATIC NAME" ACDLabs 12.01 "6-[4-(3,5-dichloro-4-methylphenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione" 5YJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[4-[3,5-bis(chloranyl)-4-methyl-phenyl]piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5YJ "Create component" 2021-07-27 RCSB 5YJ "Initial release" 2021-11-10 RCSB ##