data_5YN # _chem_comp.id 5YN _chem_comp.name "6-[4-(3,4,5-trichlorophenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H13 Cl3 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-27 _chem_comp.pdbx_modified_date 2021-11-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 403.648 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5YN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RLS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5YN C16 C1 C 0 1 Y N N 8.113 -0.691 18.464 -2.376 -1.021 -0.891 C16 5YN 1 5YN C19 C2 C 0 1 N N N 15.814 -3.761 17.370 5.086 -0.810 1.812 C19 5YN 2 5YN C2 C3 C 0 1 N N N 14.261 -0.447 18.065 3.367 1.544 -0.505 C2 5YN 3 5YN C1 C4 C 0 1 N N N 14.678 -1.633 17.230 4.287 0.498 0.003 C1 5YN 4 5YN C6 C5 C 0 1 N N N 10.854 -1.358 18.404 -0.151 1.898 -0.784 C6 5YN 5 5YN C5 C6 C 0 1 N N N 12.259 -1.749 18.825 1.199 2.221 -1.432 C5 5YN 6 5YN C8 C7 C 0 1 N N N 11.206 0.908 19.277 0.431 -0.445 -0.554 C8 5YN 7 5YN C9 C8 C 0 1 N N N 12.652 0.551 19.598 1.805 -0.218 -1.193 C9 5YN 8 5YN C10 C9 C 0 1 Y N N 8.996 -0.062 19.365 -1.827 0.237 -0.676 C10 5YN 9 5YN C11 C10 C 0 1 Y N N 8.461 0.792 20.351 -2.570 1.215 -0.029 C11 5YN 10 5YN C12 C11 C 0 1 Y N N 7.092 1.003 20.426 -3.854 0.936 0.401 C12 5YN 11 5YN C13 C12 C 0 1 Y N N 6.205 0.390 19.547 -4.400 -0.319 0.186 C13 5YN 12 5YN O3 O1 O 0 1 N N N 14.957 0.577 18.018 3.690 2.714 -0.456 O3 5YN 13 5YN C14 C13 C 0 1 Y N N 6.748 -0.455 18.570 -3.661 -1.296 -0.459 C14 5YN 14 5YN C22 C14 C 0 1 N N N 14.862 -2.983 15.218 6.065 -1.131 -0.287 C22 5YN 15 5YN C24 C15 C 0 1 N N N 14.408 -1.786 15.908 5.165 -0.110 -0.837 C24 5YN 16 5YN N18 N1 N 0 1 N N N 15.343 -2.601 17.947 4.260 0.134 1.332 N18 5YN 17 5YN N21 N2 N 0 1 N N N 15.548 -3.889 16.014 5.976 -1.438 1.024 N21 5YN 18 5YN N4 N3 N 0 1 N N N 13.120 -0.564 18.767 2.172 1.197 -1.023 N4 5YN 19 5YN N7 N4 N 0 1 N N N 10.370 -0.279 19.293 -0.529 0.517 -1.111 N7 5YN 20 5YN O20 O2 O 0 1 N N N 16.414 -4.612 18.008 5.030 -1.102 2.991 O20 5YN 21 5YN O23 O3 O 0 1 N N N 14.680 -3.235 14.023 6.866 -1.700 -1.003 O23 5YN 22 5YN CL15 CL1 CL 0 0 N N N 5.658 -1.228 17.441 -4.348 -2.868 -0.727 CL15 5YN 23 5YN CL17 CL2 CL 0 0 N N N 4.488 0.674 19.668 -6.012 -0.667 0.727 CL17 5YN 24 5YN CL25 CL3 CL 0 0 N N N 6.467 2.069 21.677 -4.783 2.158 1.211 CL25 5YN 25 5YN H1 H1 H 0 1 N N N 8.494 -1.350 17.698 -1.802 -1.782 -1.398 H1 5YN 26 5YN H2 H2 H 0 1 N N N 10.866 -1.001 17.363 -0.070 2.006 0.298 H2 5YN 27 5YN H3 H3 H 0 1 N N N 10.188 -2.230 18.485 -0.910 2.582 -1.163 H3 5YN 28 5YN H4 H4 H 0 1 N N N 12.241 -2.142 19.852 1.095 2.215 -2.517 H4 5YN 29 5YN H5 H5 H 0 1 N N N 12.647 -2.521 18.144 1.538 3.204 -1.102 H5 5YN 30 5YN H6 H6 H 0 1 N N N 11.161 1.369 18.279 0.095 -1.460 -0.767 H6 5YN 31 5YN H7 H7 H 0 1 N N N 10.835 1.622 20.027 0.504 -0.304 0.524 H7 5YN 32 5YN H8 H8 H 0 1 N N N 12.724 0.264 20.657 2.546 -0.849 -0.703 H8 5YN 33 5YN H9 H9 H 0 1 N N N 13.288 1.429 19.412 1.761 -0.462 -2.255 H9 5YN 34 5YN H10 H10 H 0 1 N N N 9.120 1.284 21.051 -2.145 2.194 0.139 H10 5YN 35 5YN H11 H11 H 0 1 N N N 13.860 -1.024 15.373 5.208 0.161 -1.881 H11 5YN 36 5YN H13 H13 H 0 1 N N N 15.884 -4.717 15.566 6.559 -2.116 1.401 H13 5YN 37 5YN H12 H12 H 0 1 N N N 15.490 -2.457 18.926 3.633 0.568 1.932 H12 5YN 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5YN O23 C22 DOUB N N 1 5YN C22 C24 SING N N 2 5YN C22 N21 SING N N 3 5YN C24 C1 DOUB N N 4 5YN N21 C19 SING N N 5 5YN C1 N18 SING N N 6 5YN C1 C2 SING N N 7 5YN C19 N18 SING N N 8 5YN C19 O20 DOUB N N 9 5YN CL15 C14 SING N N 10 5YN O3 C2 DOUB N N 11 5YN C2 N4 SING N N 12 5YN C6 C5 SING N N 13 5YN C6 N7 SING N N 14 5YN C16 C14 DOUB Y N 15 5YN C16 C10 SING Y N 16 5YN C14 C13 SING Y N 17 5YN N4 C5 SING N N 18 5YN N4 C9 SING N N 19 5YN C8 N7 SING N N 20 5YN C8 C9 SING N N 21 5YN N7 C10 SING N N 22 5YN C10 C11 DOUB Y N 23 5YN C13 CL17 SING N N 24 5YN C13 C12 DOUB Y N 25 5YN C11 C12 SING Y N 26 5YN C12 CL25 SING N N 27 5YN C16 H1 SING N N 28 5YN C6 H2 SING N N 29 5YN C6 H3 SING N N 30 5YN C5 H4 SING N N 31 5YN C5 H5 SING N N 32 5YN C8 H6 SING N N 33 5YN C8 H7 SING N N 34 5YN C9 H8 SING N N 35 5YN C9 H9 SING N N 36 5YN C11 H10 SING N N 37 5YN C24 H11 SING N N 38 5YN N21 H13 SING N N 39 5YN N18 H12 SING N N 40 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5YN SMILES ACDLabs 12.01 "O=C(C1=CC(=O)NC(=O)N1)N1CCN(CC1)c1cc(Cl)c(Cl)c(Cl)c1" 5YN InChI InChI 1.03 "InChI=1S/C15H13Cl3N4O3/c16-9-5-8(6-10(17)13(9)18)21-1-3-22(4-2-21)14(24)11-7-12(23)20-15(25)19-11/h5-7H,1-4H2,(H2,19,20,23,25)" 5YN InChIKey InChI 1.03 BYGXXTSBJDGVES-UHFFFAOYSA-N 5YN SMILES_CANONICAL CACTVS 3.385 "Clc1cc(cc(Cl)c1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3" 5YN SMILES CACTVS 3.385 "Clc1cc(cc(Cl)c1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3" 5YN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(c(c1Cl)Cl)Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3" 5YN SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc(c(c1Cl)Cl)Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5YN "SYSTEMATIC NAME" ACDLabs 12.01 "6-[4-(3,4,5-trichlorophenyl)piperazine-1-carbonyl]pyrimidine-2,4(1H,3H)-dione" 5YN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[4-[3,4,5-tris(chloranyl)phenyl]piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5YN "Create component" 2021-07-27 RCSB 5YN "Initial release" 2021-11-10 RCSB ##