data_5YV # _chem_comp.id 5YV _chem_comp.name "~{N}-[(1~{R})-1-(3-methoxyphenyl)ethyl]-4-pyridin-4-yl-cyclohexane-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H26 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-19 _chem_comp.pdbx_modified_date 2025-10-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 338.443 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5YV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7P6P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5YV C1 C1 C 0 1 N N N N N N 23.315 10.093 23.020 -7.596 2.106 1.005 C1 5YV 1 5YV C3 C2 C 0 1 Y N N N N N 22.952 9.536 20.683 -5.677 0.849 0.384 C3 5YV 2 5YV C4 C3 C 0 1 Y N N N N N 23.309 9.710 19.361 -5.544 1.696 -0.706 C4 5YV 3 5YV C5 C4 C 0 1 Y N N N N N 22.698 8.986 18.367 -4.504 1.515 -1.598 C5 5YV 4 5YV C6 C5 C 0 1 Y N N N N N 21.721 8.072 18.683 -3.597 0.490 -1.405 C6 5YV 5 5YV C7 C6 C 0 1 Y N N N N N 21.360 7.887 19.997 -3.728 -0.357 -0.320 C7 5YV 6 5YV C8 C7 C 0 1 Y N N N N N 21.968 8.614 20.994 -4.765 -0.179 0.575 C8 5YV 7 5YV C11 C8 C 0 1 N N N N N N 18.967 7.630 20.474 -3.096 -2.649 -1.025 C11 5YV 8 5YV O14 O1 O 0 1 N N N N N N 21.518 4.467 20.273 -0.462 -2.517 0.887 O14 5YV 9 5YV C15 C9 C 0 1 N N N N N N 20.621 3.768 18.219 1.071 -1.101 -0.214 C15 5YV 10 5YV C17 C10 C 0 1 N N N N N N 21.980 3.367 17.671 1.206 0.368 0.194 C17 5YV 11 5YV C18 C11 C 0 1 N N N N N N 21.739 2.499 16.441 2.612 0.864 -0.144 C18 5YV 12 5YV C19 C12 C 0 1 N N N N N N 20.973 1.246 16.852 3.645 0.028 0.614 C19 5YV 13 5YV C21 C13 C 0 1 N N N N N N 19.642 1.641 17.486 3.511 -1.441 0.206 C21 5YV 14 5YV C23 C14 C 0 1 Y N N N N N 20.732 0.401 15.633 5.031 0.517 0.281 C23 5YV 15 5YV C24 C15 C 0 1 Y N N N N N 19.856 0.808 14.652 5.872 0.996 1.274 C24 5YV 16 5YV C27 C16 C 0 1 Y N N N N N 21.140 -1.547 14.336 6.771 0.957 -1.293 C27 5YV 17 5YV O2 O2 O 0 1 N N N N N N 23.584 10.278 21.631 -6.695 1.028 1.265 O2 5YV 18 5YV C9 C17 C 0 1 N N R N N N 20.294 6.898 20.350 -2.737 -1.474 -0.113 C9 5YV 19 5YV N12 N1 N 0 1 N N N N N N 20.157 5.917 19.285 -1.390 -0.998 -0.437 N12 5YV 20 5YV C13 C18 C 0 1 N N N N N N 20.801 4.740 19.343 -0.315 -1.590 0.119 C13 5YV 21 5YV C22 C19 C 0 1 N N N N N N 19.911 2.515 18.707 2.104 -1.937 0.544 C22 5YV 22 5YV C25 C20 C 0 1 Y N N N N N 19.659 0.007 13.549 7.136 1.436 0.930 C25 5YV 23 5YV N26 N2 N 0 1 Y N N N N N 20.299 -1.130 13.424 7.544 1.405 -0.323 N26 5YV 24 5YV C28 C21 C 0 1 Y N N N N N 21.384 -0.802 15.464 5.497 0.494 -1.025 C28 5YV 25 5YV H1 H1 H 0 1 N N N N N N 23.929 10.790 23.609 -8.359 2.138 1.783 H1 5YV 26 5YV H2 H2 H 0 1 N N N N N N 22.250 10.287 23.216 -7.045 3.047 0.999 H2 5YV 27 5YV H3 H3 H 0 1 N N N N N N 23.558 9.059 23.306 -8.071 1.957 0.036 H3 5YV 28 5YV H4 H4 H 0 1 N N N N N N 24.078 10.424 19.105 -6.253 2.497 -0.858 H4 5YV 29 5YV H5 H5 H 0 1 N N N N N N 22.985 9.135 17.337 -4.401 2.175 -2.447 H5 5YV 30 5YV H6 H6 H 0 1 N N N N N N 21.239 7.502 17.903 -2.786 0.350 -2.104 H6 5YV 31 5YV H7 H7 H 0 1 N N N N N N 21.676 8.465 22.023 -4.863 -0.838 1.425 H7 5YV 32 5YV H8 H8 H 0 1 N N N N N N 19.036 8.382 21.274 -3.066 -2.324 -2.065 H8 5YV 33 5YV H9 H9 H 0 1 N N N N N N 18.733 8.128 19.522 -2.380 -3.457 -0.875 H9 5YV 34 5YV H10 H10 H 0 1 N N N N N N 18.172 6.909 20.716 -4.099 -3.003 -0.784 H10 5YV 35 5YV H11 H11 H 0 1 N N N N N N 20.028 4.234 17.418 1.242 -1.197 -1.286 H11 5YV 36 5YV H12 H12 H 0 1 N N N N N N 22.538 2.798 18.429 0.470 0.964 -0.346 H12 5YV 37 5YV H13 H13 H 0 1 N N N N N N 22.552 4.264 17.392 1.034 0.464 1.266 H13 5YV 38 5YV H14 H14 H 0 1 N N N N N N 22.704 2.211 15.999 2.784 0.768 -1.216 H14 5YV 39 5YV H15 H15 H 0 1 N N N N N N 21.151 3.063 15.702 2.708 1.911 0.147 H15 5YV 40 5YV H16 H16 H 0 1 N N N N N N 21.569 0.679 17.582 3.474 0.124 1.686 H16 5YV 41 5YV H17 H17 H 0 1 N N N N N N 19.039 2.202 16.757 3.682 -1.537 -0.866 H17 5YV 42 5YV H18 H18 H 0 1 N N N N N N 19.097 0.736 17.793 4.246 -2.037 0.746 H18 5YV 43 5YV H19 H19 H 0 1 N N N N N N 19.329 1.746 14.746 5.544 1.024 2.302 H19 5YV 44 5YV H20 H20 H 0 1 N N N N N N 21.649 -2.490 14.200 7.141 0.943 -2.307 H20 5YV 45 5YV H21 H21 H 0 1 N N N N N N 20.537 6.405 21.303 -2.768 -1.798 0.927 H21 5YV 46 5YV H22 H22 H 0 1 N N N N N N 19.575 6.122 18.498 -1.272 -0.257 -1.052 H22 5YV 47 5YV H23 H23 H 0 1 N N N N N N 18.962 2.785 19.193 1.932 -1.841 1.616 H23 5YV 48 5YV H24 H24 H 0 1 N N N N N N 20.549 1.976 19.423 2.008 -2.984 0.253 H24 5YV 49 5YV H25 H25 H 0 1 N N N N N N 18.970 0.319 12.779 7.798 1.811 1.698 H25 5YV 50 5YV H26 H26 H 0 1 N N N N N N 22.080 -1.155 16.211 4.868 0.128 -1.823 H26 5YV 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5YV N26 C25 DOUB Y N 1 5YV N26 C27 SING Y N 2 5YV C25 C24 SING Y N 3 5YV C27 C28 DOUB Y N 4 5YV C24 C23 DOUB Y N 5 5YV C28 C23 SING Y N 6 5YV C23 C19 SING N N 7 5YV C18 C19 SING N N 8 5YV C18 C17 SING N N 9 5YV C19 C21 SING N N 10 5YV C21 C22 SING N N 11 5YV C17 C15 SING N N 12 5YV C15 C22 SING N N 13 5YV C15 C13 SING N N 14 5YV C5 C6 DOUB Y N 15 5YV C5 C4 SING Y N 16 5YV C6 C7 SING Y N 17 5YV N12 C13 SING N N 18 5YV N12 C9 SING N N 19 5YV C13 O14 DOUB N N 20 5YV C4 C3 DOUB Y N 21 5YV C7 C9 SING N N 22 5YV C7 C8 DOUB Y N 23 5YV C9 C11 SING N N 24 5YV C3 C8 SING Y N 25 5YV C3 O2 SING N N 26 5YV O2 C1 SING N N 27 5YV C1 H1 SING N N 28 5YV C1 H2 SING N N 29 5YV C1 H3 SING N N 30 5YV C4 H4 SING N N 31 5YV C5 H5 SING N N 32 5YV C6 H6 SING N N 33 5YV C8 H7 SING N N 34 5YV C11 H8 SING N N 35 5YV C11 H9 SING N N 36 5YV C11 H10 SING N N 37 5YV C15 H11 SING N N 38 5YV C17 H12 SING N N 39 5YV C17 H13 SING N N 40 5YV C18 H14 SING N N 41 5YV C18 H15 SING N N 42 5YV C19 H16 SING N N 43 5YV C21 H17 SING N N 44 5YV C21 H18 SING N N 45 5YV C24 H19 SING N N 46 5YV C27 H20 SING N N 47 5YV C9 H21 SING N N 48 5YV N12 H22 SING N N 49 5YV C22 H23 SING N N 50 5YV C22 H24 SING N N 51 5YV C25 H25 SING N N 52 5YV C28 H26 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5YV InChI InChI 1.03 "InChI=1S/C21H26N2O2/c1-15(19-4-3-5-20(14-19)25-2)23-21(24)18-8-6-16(7-9-18)17-10-12-22-13-11-17/h3-5,10-16,18H,6-9H2,1-2H3,(H,23,24)/t15-,16-,18-/m1/s1" 5YV InChIKey InChI 1.03 IQNOBOSIDWEVKC-JFIYKMOQSA-N 5YV SMILES_CANONICAL CACTVS 3.385 "COc1cccc(c1)[C@@H](C)NC(=O)[C@H]2CC[C@@H](CC2)c3ccncc3" 5YV SMILES CACTVS 3.385 "COc1cccc(c1)[CH](C)NC(=O)[CH]2CC[CH](CC2)c3ccncc3" 5YV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](c1cccc(c1)OC)NC(=O)C2CCC(CC2)c3ccncc3" 5YV SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc(c1)OC)NC(=O)C2CCC(CC2)c3ccncc3" # _pdbx_chem_comp_identifier.comp_id 5YV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(1~{R})-1-(3-methoxyphenyl)ethyl]-4-pyridin-4-yl-cyclohexane-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5YV "Create component" 2021-07-19 PDBE 5YV "Initial release" 2025-10-22 RCSB #