data_5YW # _chem_comp.id 5YW _chem_comp.name "N-[[5-(3-phenylprop-2-ynoylamino)-2-propoxy-phenyl]methyl]-4-pyrimidin-2-yl-benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H26 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-02-04 _chem_comp.pdbx_modified_date 2022-04-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 490.552 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5YW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7WOX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5YW C1 C1 C 0 1 N N N 17.124 25.803 4.550 2.465 6.871 1.636 C1 5YW 1 5YW C2 C2 C 0 1 N N N 18.099 26.031 5.733 2.251 5.715 0.658 C2 5YW 2 5YW C3 C3 C 0 1 N N N 18.159 24.755 6.539 0.892 5.065 0.926 C3 5YW 3 5YW O1 O1 O 0 1 N N N 16.811 24.355 6.889 0.692 3.984 0.012 O1 5YW 4 5YW C4 C4 C 0 1 Y N N 16.675 23.220 7.651 -0.476 3.296 0.117 C4 5YW 5 5YW C5 C5 C 0 1 Y N N 17.763 22.432 8.012 -1.408 3.654 1.079 C5 5YW 6 5YW C6 C6 C 0 1 Y N N 17.556 21.304 8.774 -2.594 2.955 1.186 C6 5YW 7 5YW C7 C7 C 0 1 Y N N 16.264 20.941 9.182 -2.854 1.893 0.329 C7 5YW 8 5YW N1 N1 N 0 1 N N N 16.255 19.715 9.921 -4.056 1.185 0.437 N1 5YW 9 5YW C8 C8 C 0 1 N N N 17.363 18.900 9.992 -4.087 -0.135 0.167 C8 5YW 10 5YW O2 O2 O 0 1 N N N 18.403 19.120 9.317 -3.053 -0.731 -0.076 O2 5YW 11 5YW C9 C9 C 0 1 N N N 17.383 17.874 11.065 -5.335 -0.838 0.166 C9 5YW 12 5YW C10 C10 C 0 1 N N N 18.333 18.040 12.101 -6.358 -1.413 0.166 C10 5YW 13 5YW C11 C11 C 0 1 Y N N 18.285 17.093 13.209 -7.606 -2.115 0.165 C11 5YW 14 5YW C12 C12 C 0 1 Y N N 19.444 16.560 13.801 -8.796 -1.433 0.438 C12 5YW 15 5YW C13 C13 C 0 1 Y N N 19.342 15.659 14.849 -9.994 -2.116 0.436 C13 5YW 16 5YW C14 C14 C 0 1 Y N N 18.078 15.265 15.293 -10.020 -3.473 0.164 C14 5YW 17 5YW C15 C15 C 0 1 Y N N 16.919 15.771 14.697 -8.847 -4.155 -0.106 C15 5YW 18 5YW C16 C16 C 0 1 Y N N 17.023 16.684 13.657 -7.642 -3.485 -0.114 C16 5YW 19 5YW C17 C17 C 0 1 Y N N 15.168 21.729 8.794 -1.919 1.535 -0.634 C17 5YW 20 5YW C18 C18 C 0 1 Y N N 15.367 22.883 8.023 -0.736 2.239 -0.743 C18 5YW 21 5YW C19 C19 C 0 1 N N N 14.211 23.753 7.606 0.275 1.854 -1.792 C19 5YW 22 5YW N2 N2 N 0 1 N N N 13.487 24.304 8.765 1.332 1.047 -1.179 N2 5YW 23 5YW C20 C20 C 0 1 N N N 13.944 25.341 9.503 2.351 0.587 -1.932 C20 5YW 24 5YW O3 O3 O 0 1 N N N 15.173 25.513 9.739 2.393 0.842 -3.119 O3 5YW 25 5YW C21 C21 C 0 1 Y N N 12.888 26.354 9.927 3.418 -0.228 -1.313 C21 5YW 26 5YW C22 C22 C 0 1 Y N N 11.538 26.154 9.556 3.368 -0.526 0.051 C22 5YW 27 5YW C23 C23 C 0 1 Y N N 10.551 27.089 9.920 4.362 -1.286 0.626 C23 5YW 28 5YW C24 C24 C 0 1 Y N N 10.901 28.237 10.659 5.419 -1.757 -0.152 C24 5YW 29 5YW C25 C25 C 0 1 Y N N 9.860 29.250 11.000 6.489 -2.575 0.469 C25 5YW 30 5YW N3 N3 N 0 1 Y N N 8.581 28.954 10.629 6.422 -2.853 1.763 N3 5YW 31 5YW C26 C26 C 0 1 Y N N 7.659 29.908 10.915 7.359 -3.580 2.348 C26 5YW 32 5YW C27 C27 C 0 1 Y N N 7.994 31.138 11.541 8.420 -4.052 1.589 C27 5YW 33 5YW C28 C28 C 0 1 Y N N 9.348 31.345 11.866 8.459 -3.743 0.238 C28 5YW 34 5YW N4 N4 N 0 1 Y N N 10.299 30.418 11.586 7.487 -3.015 -0.285 N4 5YW 35 5YW C29 C29 C 0 1 Y N N 12.252 28.465 11.008 5.470 -1.460 -1.514 C29 5YW 36 5YW C30 C30 C 0 1 Y N N 13.237 27.530 10.638 4.474 -0.705 -2.092 C30 5YW 37 5YW H1 H1 H 0 1 N N N 17.061 26.719 3.944 3.433 7.334 1.445 H1 5YW 38 5YW H2 H2 H 0 1 N N N 17.492 24.976 3.926 1.676 7.611 1.503 H2 5YW 39 5YW H3 H3 H 0 1 N N N 16.127 25.552 4.940 2.439 6.493 2.658 H3 5YW 40 5YW H4 H4 H 0 1 N N N 19.100 26.278 5.350 2.277 6.093 -0.364 H4 5YW 41 5YW H5 H5 H 0 1 N N N 17.734 26.855 6.364 3.040 4.975 0.792 H5 5YW 42 5YW H6 H6 H 0 1 N N N 18.635 23.964 5.942 0.866 4.686 1.948 H6 5YW 43 5YW H7 H7 H 0 1 N N N 18.743 24.925 7.455 0.103 5.805 0.792 H7 5YW 44 5YW H8 H8 H 0 1 N N N 18.760 22.702 7.698 -1.206 4.480 1.746 H8 5YW 45 5YW H9 H9 H 0 1 N N N 18.398 20.692 9.061 -3.320 3.234 1.936 H9 5YW 46 5YW H10 H10 H 0 1 N N N 15.420 19.442 10.399 -4.867 1.644 0.705 H10 5YW 47 5YW H13 H13 H 0 1 N N N 20.418 16.854 13.437 -8.777 -0.375 0.651 H13 5YW 48 5YW H14 H14 H 0 1 N N N 20.232 15.265 15.318 -10.914 -1.591 0.646 H14 5YW 49 5YW H15 H15 H 0 1 N N N 17.995 14.560 16.107 -10.962 -4.003 0.164 H15 5YW 50 5YW H16 H16 H 0 1 N N N 15.947 15.453 15.044 -8.875 -5.214 -0.317 H16 5YW 51 5YW H17 H17 H 0 1 N N N 16.131 17.079 13.193 -6.727 -4.017 -0.331 H17 5YW 52 5YW H18 H18 H 0 1 N N N 14.169 21.445 9.090 -2.120 0.709 -1.300 H18 5YW 53 5YW H19 H19 H 0 1 N N N 14.595 24.586 6.999 -0.216 1.276 -2.575 H19 5YW 54 5YW H20 H20 H 0 1 N N N 13.513 23.152 7.005 0.710 2.755 -2.225 H20 5YW 55 5YW H21 H21 H 0 1 N N N 12.613 23.890 9.019 1.299 0.843 -0.231 H21 5YW 56 5YW H22 H22 H 0 1 N N N 11.262 25.277 8.989 2.549 -0.161 0.653 H22 5YW 57 5YW H23 H23 H 0 1 N N N 9.523 26.926 9.632 4.323 -1.517 1.681 H23 5YW 58 5YW H24 H24 H 0 1 N N N 6.627 29.724 10.656 7.300 -3.803 3.403 H24 5YW 59 5YW H25 H25 H 0 1 N N N 7.242 31.882 11.758 9.200 -4.648 2.041 H25 5YW 60 5YW H26 H26 H 0 1 N N N 9.638 32.266 12.351 9.271 -4.095 -0.381 H26 5YW 61 5YW H27 H27 H 0 1 N N N 12.527 29.354 11.557 6.289 -1.826 -2.116 H27 5YW 62 5YW H28 H28 H 0 1 N N N 14.270 27.710 10.898 4.512 -0.478 -3.148 H28 5YW 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5YW C1 C2 SING N N 1 5YW C2 C3 SING N N 2 5YW C3 O1 SING N N 3 5YW O1 C4 SING N N 4 5YW C19 C18 SING N N 5 5YW C19 N2 SING N N 6 5YW C4 C5 DOUB Y N 7 5YW C4 C18 SING Y N 8 5YW C5 C6 SING Y N 9 5YW C18 C17 DOUB Y N 10 5YW N2 C20 SING N N 11 5YW C6 C7 DOUB Y N 12 5YW C17 C7 SING Y N 13 5YW C7 N1 SING N N 14 5YW O2 C8 DOUB N N 15 5YW C20 O3 DOUB N N 16 5YW C20 C21 SING N N 17 5YW C22 C23 DOUB Y N 18 5YW C22 C21 SING Y N 19 5YW C23 C24 SING Y N 20 5YW N1 C8 SING N N 21 5YW C21 C30 DOUB Y N 22 5YW C8 C9 SING N N 23 5YW N3 C26 DOUB Y N 24 5YW N3 C25 SING Y N 25 5YW C30 C29 SING Y N 26 5YW C24 C25 SING N N 27 5YW C24 C29 DOUB Y N 28 5YW C26 C27 SING Y N 29 5YW C25 N4 DOUB Y N 30 5YW C9 C10 TRIP N N 31 5YW C27 C28 DOUB Y N 32 5YW N4 C28 SING Y N 33 5YW C10 C11 SING N N 34 5YW C11 C16 DOUB Y N 35 5YW C11 C12 SING Y N 36 5YW C16 C15 SING Y N 37 5YW C12 C13 DOUB Y N 38 5YW C15 C14 DOUB Y N 39 5YW C13 C14 SING Y N 40 5YW C1 H1 SING N N 41 5YW C1 H2 SING N N 42 5YW C1 H3 SING N N 43 5YW C2 H4 SING N N 44 5YW C2 H5 SING N N 45 5YW C3 H6 SING N N 46 5YW C3 H7 SING N N 47 5YW C5 H8 SING N N 48 5YW C6 H9 SING N N 49 5YW N1 H10 SING N N 50 5YW C12 H13 SING N N 51 5YW C13 H14 SING N N 52 5YW C14 H15 SING N N 53 5YW C15 H16 SING N N 54 5YW C16 H17 SING N N 55 5YW C17 H18 SING N N 56 5YW C19 H19 SING N N 57 5YW C19 H20 SING N N 58 5YW N2 H21 SING N N 59 5YW C22 H22 SING N N 60 5YW C23 H23 SING N N 61 5YW C26 H24 SING N N 62 5YW C27 H25 SING N N 63 5YW C28 H26 SING N N 64 5YW C29 H27 SING N N 65 5YW C30 H28 SING N N 66 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5YW InChI InChI 1.03 "InChI=1S/C30H26N4O3/c1-2-19-37-27-15-14-26(34-28(35)16-9-22-7-4-3-5-8-22)20-25(27)21-33-30(36)24-12-10-23(11-13-24)29-31-17-6-18-32-29/h3-8,10-15,17-18,20H,2,19,21H2,1H3,(H,33,36)(H,34,35)" 5YW InChIKey InChI 1.03 LLWADQIEAQTMON-UHFFFAOYSA-N 5YW SMILES_CANONICAL CACTVS 3.385 "CCCOc1ccc(NC(=O)C#Cc2ccccc2)cc1CNC(=O)c3ccc(cc3)c4ncccn4" 5YW SMILES CACTVS 3.385 "CCCOc1ccc(NC(=O)C#Cc2ccccc2)cc1CNC(=O)c3ccc(cc3)c4ncccn4" 5YW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCOc1ccc(cc1CNC(=O)c2ccc(cc2)c3ncccn3)NC(=O)C#Cc4ccccc4" 5YW SMILES "OpenEye OEToolkits" 2.0.7 "CCCOc1ccc(cc1CNC(=O)c2ccc(cc2)c3ncccn3)NC(=O)C#Cc4ccccc4" # _pdbx_chem_comp_identifier.comp_id 5YW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[5-(3-phenylprop-2-ynoylamino)-2-propoxy-phenyl]methyl]-4-pyrimidin-2-yl-benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5YW "Create component" 2022-02-04 PDBJ 5YW "Initial release" 2022-04-13 RCSB ##