data_5Z3 # _chem_comp.id 5Z3 _chem_comp.name "6-{4-[4-chloro-3-(trifluoromethyl)phenyl]piperazine-1-carbonyl}pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H14 Cl F3 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-28 _chem_comp.pdbx_modified_date 2021-11-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 402.756 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5Z3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RME _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5Z3 C23 C1 C 0 1 N N N 110.768 -5.531 107.284 5.093 -0.170 0.937 C23 5Z3 1 5Z3 C5 C2 C 0 1 N N N 109.153 -3.026 110.992 1.735 0.189 1.090 C5 5Z3 2 5Z3 C10 C3 C 0 1 Y N N 105.491 -3.609 110.796 -1.782 0.984 0.272 C10 5Z3 3 5Z3 C9 C4 C 0 1 N N N 108.798 -5.409 110.271 1.440 2.689 0.889 C9 5Z3 4 5Z3 C8 C5 C 0 1 N N N 107.282 -5.189 110.250 0.089 2.425 0.216 C8 5Z3 5 5Z3 C6 C6 C 0 1 N N N 107.756 -3.197 111.542 0.372 0.024 0.409 C6 5Z3 6 5Z3 C1 C7 C 0 1 N N N 111.085 -5.352 108.590 4.338 0.387 -0.045 C1 5Z3 7 5Z3 C11 C8 C 0 1 Y N N 105.021 -2.654 111.718 -2.364 1.921 -0.572 C11 5Z3 8 5Z3 C12 C9 C 0 1 Y N N 103.657 -2.464 111.934 -3.650 1.727 -1.036 C12 5Z3 9 5Z3 C13 C10 C 0 1 Y N N 102.721 -3.217 111.236 -4.359 0.600 -0.661 C13 5Z3 10 5Z3 C14 C11 C 0 1 Y N N 103.153 -4.182 110.306 -3.783 -0.336 0.181 C14 5Z3 11 5Z3 C15 C12 C 0 1 Y N N 104.523 -4.367 110.096 -2.497 -0.147 0.647 C15 5Z3 12 5Z3 C18 C13 C 0 1 N N N 112.285 -7.460 108.741 5.037 -1.296 -1.561 C18 5Z3 13 5Z3 C2 C14 C 0 1 N N N 110.689 -4.143 109.398 3.540 1.608 0.226 C2 5Z3 14 5Z3 C21 C15 C 0 1 N N N 111.222 -6.730 106.606 5.872 -1.373 0.621 C21 5Z3 15 5Z3 C24 C16 C 0 1 N N N 102.165 -5.019 109.521 -4.559 -1.562 0.588 C24 5Z3 16 5Z3 F25 F1 F 0 1 N N N 101.364 -5.750 110.327 -3.773 -2.351 1.434 F25 5Z3 17 5Z3 F26 F2 F 0 1 N N N 101.367 -4.263 108.725 -5.723 -1.175 1.259 F26 5Z3 18 5Z3 F27 F3 F 0 1 N N N 102.761 -5.904 108.695 -4.900 -2.297 -0.552 F27 5Z3 19 5Z3 N17 N1 N 0 1 N N N 111.816 -6.282 109.294 4.321 -0.191 -1.296 N17 5Z3 20 5Z3 N20 N2 N 0 1 N N N 111.965 -7.620 107.397 5.810 -1.879 -0.628 N20 5Z3 21 5Z3 N4 N3 N 0 1 N N N 109.603 -4.176 110.191 2.289 1.500 0.715 N4 5Z3 22 5Z3 N7 N4 N 0 1 N N N 106.866 -3.814 110.559 -0.479 1.175 0.738 N7 5Z3 23 5Z3 O19 O1 O 0 1 N N N 112.930 -8.282 109.391 4.994 -1.775 -2.678 O19 5Z3 24 5Z3 O22 O2 O 0 1 N N N 110.981 -6.987 105.428 6.562 -1.905 1.471 O22 5Z3 25 5Z3 O3 O3 O 0 1 N N N 111.415 -3.143 109.271 4.014 2.705 0.007 O3 5Z3 26 5Z3 CL16 CL1 CL 0 0 N N N 101.007 -2.915 111.560 -5.976 0.359 -1.246 CL16 5Z3 27 5Z3 H1 H1 H 0 1 N N N 110.185 -4.791 106.756 5.123 0.264 1.926 H1 5Z3 28 5Z3 H2 H2 H 0 1 N N N 109.847 -2.893 111.835 1.612 0.139 2.172 H2 5Z3 29 5Z3 H3 H3 H 0 1 N N N 109.172 -2.128 110.357 2.407 -0.603 0.761 H3 5Z3 30 5Z3 H4 H4 H 0 1 N N N 109.063 -6.047 109.415 1.919 3.551 0.424 H4 5Z3 31 5Z3 H5 H5 H 0 1 N N N 109.056 -5.926 111.207 1.289 2.882 1.951 H5 5Z3 32 5Z3 H6 H6 H 0 1 N N N 106.911 -5.444 109.246 -0.590 3.250 0.429 H6 5Z3 33 5Z3 H7 H7 H 0 1 N N N 106.826 -5.862 110.991 0.230 2.338 -0.861 H7 5Z3 34 5Z3 H8 H8 H 0 1 N N N 107.356 -2.210 111.816 0.509 -0.029 -0.671 H8 5Z3 35 5Z3 H9 H9 H 0 1 N N N 107.799 -3.836 112.436 -0.102 -0.892 0.761 H9 5Z3 36 5Z3 H10 H10 H 0 1 N N N 105.732 -2.056 112.269 -1.810 2.801 -0.865 H10 5Z3 37 5Z3 H11 H11 H 0 1 N N N 103.325 -1.726 112.649 -4.102 2.455 -1.692 H11 5Z3 38 5Z3 H12 H12 H 0 1 N N N 104.851 -5.107 109.381 -2.047 -0.877 1.304 H12 5Z3 39 5Z3 H13 H13 H 0 1 N N N 112.019 -6.096 110.255 3.782 0.207 -1.997 H13 5Z3 40 5Z3 H14 H14 H 0 1 N N N 112.297 -8.451 106.950 6.318 -2.674 -0.852 H14 5Z3 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5Z3 O22 C21 DOUB N N 1 5Z3 C21 C23 SING N N 2 5Z3 C21 N20 SING N N 3 5Z3 C23 C1 DOUB N N 4 5Z3 N20 C18 SING N N 5 5Z3 C1 N17 SING N N 6 5Z3 C1 C2 SING N N 7 5Z3 F27 C24 SING N N 8 5Z3 F26 C24 SING N N 9 5Z3 C18 N17 SING N N 10 5Z3 C18 O19 DOUB N N 11 5Z3 O3 C2 DOUB N N 12 5Z3 C2 N4 SING N N 13 5Z3 C24 C14 SING N N 14 5Z3 C24 F25 SING N N 15 5Z3 C15 C14 DOUB Y N 16 5Z3 C15 C10 SING Y N 17 5Z3 N4 C9 SING N N 18 5Z3 N4 C5 SING N N 19 5Z3 C8 C9 SING N N 20 5Z3 C8 N7 SING N N 21 5Z3 C14 C13 SING Y N 22 5Z3 N7 C10 SING N N 23 5Z3 N7 C6 SING N N 24 5Z3 C10 C11 DOUB Y N 25 5Z3 C5 C6 SING N N 26 5Z3 C13 CL16 SING N N 27 5Z3 C13 C12 DOUB Y N 28 5Z3 C11 C12 SING Y N 29 5Z3 C23 H1 SING N N 30 5Z3 C5 H2 SING N N 31 5Z3 C5 H3 SING N N 32 5Z3 C9 H4 SING N N 33 5Z3 C9 H5 SING N N 34 5Z3 C8 H6 SING N N 35 5Z3 C8 H7 SING N N 36 5Z3 C6 H8 SING N N 37 5Z3 C6 H9 SING N N 38 5Z3 C11 H10 SING N N 39 5Z3 C12 H11 SING N N 40 5Z3 C15 H12 SING N N 41 5Z3 N17 H13 SING N N 42 5Z3 N20 H14 SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5Z3 SMILES ACDLabs 12.01 "O=C(C1=CC(=O)NC(=O)N1)N1CCN(CC1)c1cc(c(Cl)cc1)C(F)(F)F" 5Z3 InChI InChI 1.03 "InChI=1S/C16H14ClF3N4O3/c17-11-2-1-9(7-10(11)16(18,19)20)23-3-5-24(6-4-23)14(26)12-8-13(25)22-15(27)21-12/h1-2,7-8H,3-6H2,(H2,21,22,25,27)" 5Z3 InChIKey InChI 1.03 CVDMNVBBLCPUMH-UHFFFAOYSA-N 5Z3 SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)c1cc(ccc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3" 5Z3 SMILES CACTVS 3.385 "FC(F)(F)c1cc(ccc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3" 5Z3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)C(F)(F)F)Cl" 5Z3 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)C(F)(F)F)Cl" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5Z3 "SYSTEMATIC NAME" ACDLabs 12.01 "6-{4-[4-chloro-3-(trifluoromethyl)phenyl]piperazine-1-carbonyl}pyrimidine-2,4(1H,3H)-dione" 5Z3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[4-[4-chloranyl-3-(trifluoromethyl)phenyl]piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5Z3 "Create component" 2021-07-28 RCSB 5Z3 "Initial release" 2021-11-10 RCSB ##