data_5Z4 # _chem_comp.id 5Z4 _chem_comp.name "ethyl 2-(2-(4-azido-N-((2-(1,5-dimethyl-6-oxo-1,6-dihydropyridin-3-yl)-1-((tetrahydro-2H-pyran-4-yl)methyl)-1H-benzo[d]imidazol-6-yl)methyl)-2,3,5,6-tetrafluorobenzamido)acetamido)acetate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H35 F4 N8 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2021-07-20 _chem_comp.pdbx_modified_date 2021-10-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 727.685 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5Z4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7P6V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5Z4 N1 N1 N 0 1 N N N 22.422 -7.062 -4.901 -1.571 -0.993 1.749 N1 5Z4 1 5Z4 N3 N2 N 0 1 N N N 14.820 -12.581 -8.964 7.929 -0.708 -1.437 N3 5Z4 2 5Z4 C4 C1 C 0 1 N N N 24.564 -7.003 -6.126 -2.962 0.969 1.426 C4 5Z4 3 5Z4 C5 C2 C 0 1 N N N 23.331 -7.806 -5.750 -1.812 0.162 0.881 C5 5Z4 4 5Z4 C6 C3 C 0 1 N N N 21.364 -6.323 -5.599 -0.644 -0.879 2.878 C6 5Z4 5 5Z4 C7 C4 C 0 1 Y N N 20.486 -7.173 -6.489 0.745 -1.254 2.428 C7 5Z4 6 5Z4 C8 C5 C 0 1 Y N N 19.910 -6.624 -7.636 1.162 -2.574 2.509 C8 5Z4 7 5Z4 C10 C6 C 0 1 Y N N 18.569 -8.592 -7.958 3.298 -1.961 1.602 C10 5Z4 8 5Z4 C13 C7 C 0 1 N N N 17.154 -13.011 -7.623 7.112 0.472 0.920 C13 5Z4 9 5Z4 C15 C8 C 0 1 N N N 16.915 -15.494 -7.768 9.237 1.752 1.094 C15 5Z4 10 5Z4 C17 C9 C 0 1 N N N 13.497 -12.348 -9.543 8.375 -1.333 -2.684 C17 5Z4 11 5Z4 C20 C10 C 0 1 N N N 18.128 -10.597 -4.233 3.610 1.780 -0.738 C20 5Z4 12 5Z4 C21 C11 C 0 1 N N N 16.623 -10.421 -4.383 2.160 1.362 -0.999 C21 5Z4 13 5Z4 C22 C12 C 0 1 N N N 16.019 -9.893 -3.104 1.796 1.688 -2.450 C22 5Z4 14 5Z4 C24 C13 C 0 1 N N N 18.406 -11.442 -2.998 3.765 3.271 -1.056 C24 5Z4 15 5Z4 C26 C14 C 0 1 Y N N 20.133 -8.469 -6.117 1.589 -0.282 1.933 C26 5Z4 16 5Z4 C28 C15 C 0 1 Y N N 21.716 -6.240 -2.696 -3.143 -2.270 0.380 C28 5Z4 17 5Z4 F3 F1 F 0 1 N N N 20.168 -8.026 -2.598 -1.346 -2.962 -1.017 F3 5Z4 18 5Z4 C33 C16 C 0 1 Y N N 20.534 -6.789 -2.217 -2.659 -2.681 -0.869 C33 5Z4 19 5Z4 C32 C17 C 0 1 Y N N 19.712 -6.102 -1.351 -3.499 -2.802 -1.938 C32 5Z4 20 5Z4 F2 F2 F 0 1 N N N 18.583 -6.696 -0.925 -3.026 -3.200 -3.139 F2 5Z4 21 5Z4 C31 C18 C 0 1 Y N N 20.026 -4.819 -0.911 -4.924 -2.495 -1.766 C31 5Z4 22 5Z4 N5 N3 N 0 1 N N N 19.116 -4.161 -0.028 -5.765 -2.602 -2.780 N5 5Z4 23 5Z4 N6 N4 N 1 1 N N N 19.567 -3.413 0.912 -6.853 -2.363 -2.634 N6 5Z4 24 5Z4 N7 N5 N 0 1 N N N 19.727 -2.712 1.802 -7.942 -2.125 -2.488 N7 5Z4 25 5Z4 C30 C19 C 0 1 Y N N 21.209 -4.269 -1.393 -5.393 -2.067 -0.444 C30 5Z4 26 5Z4 F1 F3 F 0 1 N N N 21.599 -3.048 -0.983 -6.697 -1.774 -0.243 F1 5Z4 27 5Z4 C29 C20 C 0 1 Y N N 22.018 -4.955 -2.269 -4.497 -1.969 0.581 C29 5Z4 28 5Z4 F F4 F 0 1 N N N 23.120 -4.340 -2.730 -4.919 -1.576 1.802 F 5Z4 29 5Z4 C27 C21 C 0 1 N N N 22.641 -7.051 -3.569 -2.205 -2.158 1.513 C27 5Z4 30 5Z4 O5 O1 O 0 1 N N N 23.566 -7.646 -3.047 -2.005 -3.116 2.234 O5 5Z4 31 5Z4 O2 O2 O 0 1 N N N 24.544 -5.773 -6.118 -3.525 0.614 2.440 O2 5Z4 32 5Z4 N N6 N 0 1 N N N 25.641 -7.717 -6.443 -3.365 2.085 0.786 N 5Z4 33 5Z4 C3 C22 C 0 1 N N N 26.570 -7.274 -7.460 -4.484 2.869 1.316 C3 5Z4 34 5Z4 C2 C23 C 0 1 N N N 27.439 -6.139 -6.986 -4.732 4.057 0.423 C2 5Z4 35 5Z4 O1 O3 O 0 1 N N N 27.587 -5.807 -5.840 -4.045 4.231 -0.556 O1 5Z4 36 5Z4 O O4 O 0 1 N N N 28.033 -5.542 -8.023 -5.716 4.922 0.715 O 5Z4 37 5Z4 C1 C24 C 0 1 N N N 27.902 -4.089 -8.111 -5.898 6.043 -0.190 C1 5Z4 38 5Z4 C C25 C 0 1 N N N 27.511 -3.736 -9.494 -7.056 6.913 0.302 C 5Z4 39 5Z4 C25 C26 C 0 1 Y N N 19.180 -9.161 -6.851 2.868 -0.625 1.518 C25 5Z4 40 5Z4 C9 C27 C 0 1 Y N N 18.955 -7.316 -8.370 2.425 -2.935 2.097 C9 5Z4 41 5Z4 N4 N7 N 0 1 Y N N 18.544 -10.381 -6.658 3.931 0.091 1.001 N4 5Z4 42 5Z4 C19 C28 C 0 1 N N N 18.736 -11.216 -5.467 3.961 1.530 0.730 C19 5Z4 43 5Z4 C23 C29 C 0 1 N N N 17.717 -10.847 -1.795 3.339 3.523 -2.504 C23 5Z4 44 5Z4 O4 O5 O 0 1 N N N 16.305 -10.750 -1.996 1.991 3.083 -2.687 O4 5Z4 45 5Z4 C11 C30 C 0 1 Y N N 17.572 -10.470 -7.631 4.952 -0.797 0.789 C11 5Z4 46 5Z4 N2 N8 N 0 1 Y N N 17.557 -9.424 -8.438 4.574 -2.001 1.145 N2 5Z4 47 5Z4 C12 C31 C 0 1 N N N 16.756 -11.673 -7.930 6.280 -0.450 0.242 C12 5Z4 48 5Z4 C18 C32 C 0 1 N N N 15.626 -11.523 -8.662 6.717 -1.022 -0.933 C18 5Z4 49 5Z4 C16 C33 C 0 1 N N N 15.162 -13.904 -8.648 8.735 0.166 -0.808 C16 5Z4 50 5Z4 O3 O6 O 0 1 N N N 14.386 -14.823 -8.898 9.826 0.433 -1.284 O3 5Z4 51 5Z4 C14 C34 C 0 1 N N N 16.425 -14.091 -7.979 8.330 0.774 0.394 C14 5Z4 52 5Z4 H1 H1 H 0 1 N N N 22.801 -8.090 -6.671 -0.917 0.784 0.845 H1 5Z4 53 5Z4 H2 H2 H 0 1 N N N 23.650 -8.713 -5.216 -2.054 -0.183 -0.124 H2 5Z4 54 5Z4 H3 H3 H 0 1 N N N 21.839 -5.550 -6.222 -0.642 0.147 3.245 H3 5Z4 55 5Z4 H4 H4 H 0 1 N N N 20.725 -5.843 -4.843 -0.960 -1.550 3.677 H4 5Z4 56 5Z4 H5 H5 H 0 1 N N N 20.214 -5.639 -7.960 0.491 -3.325 2.898 H5 5Z4 57 5Z4 H6 H6 H 0 1 N N N 18.077 -13.165 -7.083 6.785 0.929 1.842 H6 5Z4 58 5Z4 H7 H7 H 0 1 N N N 17.884 -15.470 -7.248 10.160 1.863 0.525 H7 5Z4 59 5Z4 H8 H8 H 0 1 N N N 16.186 -16.049 -7.159 8.740 2.719 1.171 H8 5Z4 60 5Z4 H9 H9 H 0 1 N N N 17.033 -15.991 -8.742 9.469 1.382 2.093 H9 5Z4 61 5Z4 H10 H10 H 0 1 N N N 12.997 -13.312 -9.717 8.064 -0.720 -3.530 H10 5Z4 62 5Z4 H11 H11 H 0 1 N N N 12.895 -11.743 -8.849 9.461 -1.420 -2.679 H11 5Z4 63 5Z4 H12 H12 H 0 1 N N N 13.604 -11.813 -10.498 7.932 -2.325 -2.773 H12 5Z4 64 5Z4 H13 H13 H 0 1 N N N 18.579 -9.605 -4.082 4.277 1.201 -1.376 H13 5Z4 65 5Z4 H14 H14 H 0 1 N N N 16.422 -9.710 -5.198 2.054 0.290 -0.829 H14 5Z4 66 5Z4 H15 H15 H 0 1 N N N 16.168 -11.393 -4.623 1.497 1.906 -0.326 H15 5Z4 67 5Z4 H16 H16 H 0 1 N N N 16.432 -8.894 -2.899 2.432 1.112 -3.122 H16 5Z4 68 5Z4 H17 H17 H 0 1 N N N 14.928 -9.820 -3.227 0.752 1.431 -2.629 H17 5Z4 69 5Z4 H18 H18 H 0 1 N N N 18.031 -12.463 -3.164 3.134 3.853 -0.384 H18 5Z4 70 5Z4 H19 H19 H 0 1 N N N 19.490 -11.475 -2.817 4.806 3.565 -0.926 H19 5Z4 71 5Z4 H20 H20 H 0 1 N N N 20.599 -8.933 -5.261 1.256 0.743 1.869 H20 5Z4 72 5Z4 H21 H21 H 0 1 N N N 18.862 -2.418 2.208 -8.559 -2.823 -2.219 H21 5Z4 73 5Z4 H22 H22 H 0 1 N N N 25.812 -8.580 -5.967 -2.915 2.369 -0.025 H22 5Z4 74 5Z4 H23 H23 H 0 1 N N N 25.999 -6.939 -8.339 -5.379 2.248 1.352 H23 5Z4 75 5Z4 H24 H24 H 0 1 N N N 27.215 -8.119 -7.742 -4.241 3.214 2.321 H24 5Z4 76 5Z4 H25 H25 H 0 1 N N N 28.863 -3.614 -7.864 -4.985 6.638 -0.220 H25 5Z4 77 5Z4 H26 H26 H 0 1 N N N 27.131 -3.743 -7.407 -6.122 5.671 -1.190 H26 5Z4 78 5Z4 H27 H27 H 0 1 N N N 27.408 -2.644 -9.579 -6.832 7.285 1.301 H27 5Z4 79 5Z4 H28 H28 H 0 1 N N N 28.284 -4.087 -10.194 -7.193 7.754 -0.377 H28 5Z4 80 5Z4 H29 H29 H 0 1 N N N 26.551 -4.215 -9.737 -7.970 6.318 0.332 H29 5Z4 81 5Z4 H30 H30 H 0 1 N N N 18.516 -6.871 -9.251 2.745 -3.964 2.167 H30 5Z4 82 5Z4 H31 H31 H 0 1 N N N 18.265 -12.195 -5.641 4.958 1.918 0.936 H31 5Z4 83 5Z4 H32 H32 H 0 1 N N N 19.815 -11.352 -5.300 3.235 2.035 1.368 H32 5Z4 84 5Z4 H33 H33 H 0 1 N N N 17.911 -11.485 -0.920 3.406 4.589 -2.723 H33 5Z4 85 5Z4 H34 H34 H 0 1 N N N 18.122 -9.841 -1.612 3.995 2.972 -3.178 H34 5Z4 86 5Z4 H35 H35 H 0 1 N N N 15.356 -10.539 -9.016 6.086 -1.726 -1.455 H35 5Z4 87 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5Z4 C17 N3 SING N N 1 5Z4 C C1 SING N N 2 5Z4 N3 C18 SING N N 3 5Z4 N3 C16 SING N N 4 5Z4 O3 C16 DOUB N N 5 5Z4 C18 C12 DOUB N N 6 5Z4 C16 C14 SING N N 7 5Z4 N2 C10 SING Y N 8 5Z4 N2 C11 DOUB Y N 9 5Z4 C9 C10 DOUB Y N 10 5Z4 C9 C8 SING Y N 11 5Z4 C1 O SING N N 12 5Z4 O C2 SING N N 13 5Z4 C14 C15 SING N N 14 5Z4 C14 C13 DOUB N N 15 5Z4 C10 C25 SING Y N 16 5Z4 C12 C11 SING N N 17 5Z4 C12 C13 SING N N 18 5Z4 C8 C7 DOUB Y N 19 5Z4 C11 N4 SING Y N 20 5Z4 C3 C2 SING N N 21 5Z4 C3 N SING N N 22 5Z4 C2 O1 DOUB N N 23 5Z4 C25 N4 SING Y N 24 5Z4 C25 C26 DOUB Y N 25 5Z4 N4 C19 SING N N 26 5Z4 C7 C26 SING Y N 27 5Z4 C7 C6 SING N N 28 5Z4 N C4 SING N N 29 5Z4 C4 O2 DOUB N N 30 5Z4 C4 C5 SING N N 31 5Z4 C5 N1 SING N N 32 5Z4 C6 N1 SING N N 33 5Z4 C19 C20 SING N N 34 5Z4 N1 C27 SING N N 35 5Z4 C21 C20 SING N N 36 5Z4 C21 C22 SING N N 37 5Z4 C20 C24 SING N N 38 5Z4 C27 O5 DOUB N N 39 5Z4 C27 C28 SING N N 40 5Z4 C22 O4 SING N N 41 5Z4 C24 C23 SING N N 42 5Z4 F C29 SING N N 43 5Z4 C28 C29 DOUB Y N 44 5Z4 C28 C33 SING Y N 45 5Z4 F3 C33 SING N N 46 5Z4 C29 C30 SING Y N 47 5Z4 C33 C32 DOUB Y N 48 5Z4 O4 C23 SING N N 49 5Z4 C30 F1 SING N N 50 5Z4 C30 C31 DOUB Y N 51 5Z4 C32 F2 SING N N 52 5Z4 C32 C31 SING Y N 53 5Z4 C31 N5 SING N N 54 5Z4 N5 N6 DOUB N N 55 5Z4 N6 N7 DOUB N N 56 5Z4 C5 H1 SING N N 57 5Z4 C5 H2 SING N N 58 5Z4 C6 H3 SING N N 59 5Z4 C6 H4 SING N N 60 5Z4 C8 H5 SING N N 61 5Z4 C13 H6 SING N N 62 5Z4 C15 H7 SING N N 63 5Z4 C15 H8 SING N N 64 5Z4 C15 H9 SING N N 65 5Z4 C17 H10 SING N N 66 5Z4 C17 H11 SING N N 67 5Z4 C17 H12 SING N N 68 5Z4 C20 H13 SING N N 69 5Z4 C21 H14 SING N N 70 5Z4 C21 H15 SING N N 71 5Z4 C22 H16 SING N N 72 5Z4 C22 H17 SING N N 73 5Z4 C24 H18 SING N N 74 5Z4 C24 H19 SING N N 75 5Z4 C26 H20 SING N N 76 5Z4 N7 H21 SING N N 77 5Z4 N H22 SING N N 78 5Z4 C3 H23 SING N N 79 5Z4 C3 H24 SING N N 80 5Z4 C1 H25 SING N N 81 5Z4 C1 H26 SING N N 82 5Z4 C H27 SING N N 83 5Z4 C H28 SING N N 84 5Z4 C H29 SING N N 85 5Z4 C9 H30 SING N N 86 5Z4 C19 H31 SING N N 87 5Z4 C19 H32 SING N N 88 5Z4 C23 H33 SING N N 89 5Z4 C23 H34 SING N N 90 5Z4 C18 H35 SING N N 91 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5Z4 InChI InChI 1.03 "InChI=1S/C34H34F4N8O6/c1-4-52-25(48)13-40-24(47)17-45(34(50)26-27(35)29(37)31(42-43-39)30(38)28(26)36)14-20-5-6-22-23(12-20)46(15-19-7-9-51-10-8-19)32(41-22)21-11-18(2)33(49)44(3)16-21/h5-6,11-12,16,19,39H,4,7-10,13-15,17H2,1-3H3/p+1" 5Z4 InChIKey InChI 1.03 GVABLHCCYXRMQO-UHFFFAOYSA-O 5Z4 SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)CNC(=O)CN(Cc1ccc2nc(n(CC3CCOCC3)c2c1)C4=CN(C)C(=O)C(=C4)C)C(=O)c5c(F)c(F)c(N=[N+]=N)c(F)c5F" 5Z4 SMILES CACTVS 3.385 "CCOC(=O)CNC(=O)CN(Cc1ccc2nc(n(CC3CCOCC3)c2c1)C4=CN(C)C(=O)C(=C4)C)C(=O)c5c(F)c(F)c(N=[N+]=N)c(F)c5F" 5Z4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)CNC(=O)CN(Cc1ccc2c(c1)n(c(n2)C3=CN(C(=O)C(=C3)C)C)CC4CCOCC4)C(=O)c5c(c(c(c(c5F)F)N=[N+]=N)F)F" 5Z4 SMILES "OpenEye OEToolkits" 2.0.7 "CCOC(=O)CNC(=O)CN(Cc1ccc2c(c1)n(c(n2)C3=CN(C(=O)C(=C3)C)C)CC4CCOCC4)C(=O)c5c(c(c(c(c5F)F)N=[N+]=N)F)F" # _pdbx_chem_comp_identifier.comp_id 5Z4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "azanylidene-[4-[[2-(1,5-dimethyl-6-oxidanylidene-pyridin-3-yl)-3-(oxan-4-ylmethyl)benzimidazol-5-yl]methyl-[2-[(2-ethoxy-2-oxidanylidene-ethyl)amino]-2-oxidanylidene-ethyl]carbamoyl]-2,3,5,6-tetrakis(fluoranyl)phenyl]imino-azanium" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5Z4 "Create component" 2021-07-20 PDBE 5Z4 "Initial release" 2021-10-06 RCSB ##