data_5Z9 # _chem_comp.id 5Z9 _chem_comp.name "(2R)-2-methyl-2-oxidanyl-butanenitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H9 N O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-09-03 _chem_comp.pdbx_modified_date 2022-02-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 99.131 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5Z9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7VB6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5Z9 N1 N1 N 0 1 N N N -33.053 12.331 66.344 -2.542 -0.602 0.088 N1 5Z9 1 5Z9 C1 C1 C 0 1 N N N -32.210 9.931 69.175 2.322 -0.549 0.060 C1 5Z9 2 5Z9 C2 C2 C 0 1 N N N -33.508 9.603 68.466 0.867 -1.018 -0.007 C2 5Z9 3 5Z9 C3 C3 C 0 1 N N R -34.340 10.842 68.113 -0.062 0.198 -0.013 C3 5Z9 4 5Z9 C4 C4 C 0 1 N N N -35.654 10.386 67.501 0.241 1.076 1.203 C4 5Z9 5 5Z9 C5 C5 C 0 1 N N N -33.595 11.692 67.139 -1.462 -0.253 0.044 C5 5Z9 6 5Z9 O1 O1 O 0 1 N N N -34.509 11.499 69.392 0.148 0.951 -1.209 O1 5Z9 7 5Z9 H1 H1 H 0 1 N N N -31.667 9.000 69.397 2.543 0.073 -0.807 H1 5Z9 8 5Z9 H2 H2 H 0 1 N N N -31.591 10.571 68.529 2.475 0.030 0.971 H2 5Z9 9 5Z9 H3 H3 H 0 1 N N N -32.429 10.460 70.114 2.983 -1.415 0.064 H3 5Z9 10 5Z9 H4 H4 H 0 1 N N N -34.109 8.955 69.121 0.713 -1.597 -0.918 H4 5Z9 11 5Z9 H5 H5 H 0 1 N N N -33.271 9.066 67.536 0.646 -1.640 0.861 H5 5Z9 12 5Z9 H6 H6 H 0 1 N N N -36.198 9.760 68.224 1.277 1.411 1.161 H6 5Z9 13 5Z9 H7 H7 H 0 1 N N N -36.264 11.265 67.245 -0.421 1.943 1.199 H7 5Z9 14 5Z9 H8 H8 H 0 1 N N N -35.451 9.803 66.591 0.081 0.502 2.115 H8 5Z9 15 5Z9 H9 H9 H 0 1 N N N -34.986 10.927 69.982 -0.025 0.456 -2.021 H9 5Z9 16 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5Z9 N1 C5 TRIP N N 1 5Z9 C5 C3 SING N N 2 5Z9 C4 C3 SING N N 3 5Z9 C3 C2 SING N N 4 5Z9 C3 O1 SING N N 5 5Z9 C2 C1 SING N N 6 5Z9 C1 H1 SING N N 7 5Z9 C1 H2 SING N N 8 5Z9 C1 H3 SING N N 9 5Z9 C2 H4 SING N N 10 5Z9 C2 H5 SING N N 11 5Z9 C4 H6 SING N N 12 5Z9 C4 H7 SING N N 13 5Z9 C4 H8 SING N N 14 5Z9 O1 H9 SING N N 15 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5Z9 InChI InChI 1.03 "InChI=1S/C5H9NO/c1-3-5(2,7)4-6/h7H,3H2,1-2H3/t5-/m1/s1" 5Z9 InChIKey InChI 1.03 VMEHOTODTPXCKT-RXMQYKEDSA-N 5Z9 SMILES_CANONICAL CACTVS 3.385 "CC[C@@](C)(O)C#N" 5Z9 SMILES CACTVS 3.385 "CC[C](C)(O)C#N" 5Z9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@](C)(C#N)O" 5Z9 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)(C#N)O" # _pdbx_chem_comp_identifier.comp_id 5Z9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-methyl-2-oxidanyl-butanenitrile" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5Z9 "Create component" 2021-09-03 PDBJ 5Z9 "Initial release" 2022-02-09 RCSB ##