data_5ZA # _chem_comp.id 5ZA _chem_comp.name "(5Z)-2-[(1S,2R)-1-AMINO-2-HYDROXYPROPYL]-5-[(4-AMINO-1H-INDOL-3-YL)METHYLENE]-3-(2-HYDROXYETHYL)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C17 H19 N5 O4" _chem_comp.mon_nstd_parent_comp_id "THR, TRP, GLY" _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-04-22 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 357.364 _chem_comp.one_letter_code TWG _chem_comp.three_letter_code 5ZA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1OXF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5ZA C25 C25 C 0 1 N N N N N N 0.112 56.967 -1.548 -4.172 3.252 -0.130 C25 5ZA 1 5ZA C23 C23 C 0 1 N N R N N N 0.937 57.004 -0.260 -3.307 2.020 -0.403 C23 5ZA 2 5ZA O24 O24 O 0 1 N N N N N N 1.924 57.790 -0.622 -2.186 2.392 -1.207 O24 5ZA 3 5ZA CA1 C22 C 0 1 N N R Y N N 0.127 57.453 0.893 -2.813 1.439 0.924 C22 5ZA 4 5ZA N1 N26 N 0 1 N N N Y Y N -0.873 58.508 0.396 -2.119 2.484 1.687 N26 5ZA 5 5ZA C1 C14 C 0 1 N N N Y N N 0.748 58.191 2.064 -1.864 0.301 0.651 C14 5ZA 6 5ZA N2 N13 N 0 1 N N N Y N N 1.910 58.725 2.041 -0.596 0.443 0.422 N13 5ZA 7 5ZA CA2 C12 C 0 1 N N N Y N N 2.231 59.268 3.219 -0.033 -0.785 0.217 C12 5ZA 8 5ZA C11 C11 C 0 1 N N N N N N 3.388 59.973 3.593 1.295 -1.059 -0.057 C11 5ZA 9 5ZA C7 C7 C 0 1 Y N N N N N 4.479 60.314 2.784 2.230 -0.003 -0.149 C7 5ZA 10 5ZA C8 C8 C 0 1 Y N N N N N 4.626 60.011 1.426 1.951 1.342 -0.298 C8 5ZA 11 5ZA N9 N9 N 0 1 Y N N N N N 5.776 60.514 0.952 3.110 2.040 -0.348 N9 5ZA 12 5ZA C6 C6 C 0 1 Y N N N N N 6.403 61.143 1.937 4.194 1.192 -0.235 C6 5ZA 13 5ZA C5 C5 C 0 1 Y N N N N N 7.644 61.825 1.869 5.569 1.407 -0.230 C5 5ZA 14 5ZA C4 C4 C 0 1 Y N N N N N 8.158 62.441 3.021 6.435 0.343 -0.099 C4 5ZA 15 5ZA C19 C3 C 0 1 Y N N N N N 7.423 62.364 4.212 5.953 -0.950 0.028 C3 5ZA 16 5ZA C16 C2 C 0 1 Y N N N N N 6.163 61.667 4.258 4.588 -1.188 0.024 C2 5ZA 17 5ZA N10 N10 N 0 1 N N N N N N 5.486 61.670 5.592 4.101 -2.490 0.152 N10 5ZA 18 5ZA C14 C1 C 0 1 Y N N N N N 5.633 61.050 3.134 3.702 -0.114 -0.101 C1 5ZA 19 5ZA C2 C16 C 0 1 N N N Y N N 1.107 59.008 4.063 -1.128 -1.754 0.347 C16 5ZA 20 5ZA O2 O17 O 0 1 N N N Y N N 0.969 59.339 5.279 -1.060 -2.966 0.237 O17 5ZA 21 5ZA N3 N15 N 0 1 N N N Y N N 0.176 58.350 3.284 -2.227 -1.016 0.619 N15 5ZA 22 5ZA CA3 C18 C 0 1 N N N Y N N -1.198 57.909 3.688 -3.578 -1.539 0.840 C18 5ZA 23 5ZA C3 C19 C 0 1 N N N Y N Y -1.272 56.573 4.289 -4.310 -1.611 -0.475 C19 5ZA 24 5ZA O3 O21 O 0 1 N N N Y N Y -2.286 56.371 5.074 -3.760 -1.261 -1.493 O21 5ZA 25 5ZA H251 H251 H 0 0 N N N N N N -0.959 56.958 -1.298 -4.524 3.666 -1.075 H251 5ZA 26 5ZA H252 H252 H 0 0 N N N N N N 0.339 57.856 -2.155 -5.027 2.968 0.483 H252 5ZA 27 5ZA H253 H253 H 0 0 N N N N N N 0.363 56.060 -2.118 -3.580 4.001 0.397 H253 5ZA 28 5ZA H23 H23 H 0 1 N N N N N N 1.306 56.037 0.112 -3.899 1.271 -0.930 H23 5ZA 29 5ZA H24 H24 H 0 1 N N N N N N 1.854 57.980 -1.550 -2.425 2.769 -2.065 H24 5ZA 30 5ZA HA1 H22 H 0 1 N N N Y N N -0.217 56.477 1.265 -3.664 1.073 1.499 H22 5ZA 31 5ZA H H261 H 0 0 N N N Y Y N -1.090 59.139 1.141 -1.326 2.840 1.174 H261 5ZA 32 5ZA H2 H262 H 0 0 N Y N Y Y N -0.470 59.017 -0.365 -2.751 3.230 1.938 H262 5ZA 33 5ZA H11 H11 H 0 1 N N N N N N 3.442 60.288 4.624 1.618 -2.080 -0.200 H11 5ZA 34 5ZA H8 H8 H 0 1 N N N N N N 3.913 59.450 0.840 0.961 1.769 -0.364 H8 5ZA 35 5ZA HN9 HN9 H 0 1 N N N N N N 6.106 60.429 0.012 3.171 3.003 -0.449 HN9 5ZA 36 5ZA H5 H5 H 0 1 N N N N N N 8.190 61.870 0.938 5.958 2.410 -0.328 H5 5ZA 37 5ZA H4 H4 H 0 1 N N N N N N 9.102 62.964 2.990 7.501 0.518 -0.095 H4 5ZA 38 5ZA H3 H3 H 0 1 N N N N N N 7.806 62.833 5.106 6.643 -1.775 0.128 H3 5ZA 39 5ZA H101 H101 H 0 0 N N N N N N 6.176 61.671 6.316 4.706 -3.214 0.375 H101 5ZA 40 5ZA H102 H102 H 0 0 N N N N N N 4.916 62.487 5.674 3.157 -2.670 0.019 H102 5ZA 41 5ZA HA31 H181 H 0 0 N N N Y N N -1.574 58.629 4.430 -3.515 -2.536 1.276 H181 5ZA 42 5ZA HA32 H182 H 0 0 N N N Y N N -1.793 57.866 2.764 -4.117 -0.879 1.520 H182 5ZA 43 5ZA OXT OXT O 0 1 N Y N Y N Y -0.086 55.835 3.986 -5.573 -2.063 -0.517 OXT 5ZA 44 5ZA HXT HXT H 0 1 N Y N Y N Y -0.077 55.029 4.489 -6.001 -2.091 -1.383 HXT 5ZA 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5ZA C25 C23 SING N N 1 5ZA C25 H251 SING N N 2 5ZA C25 H252 SING N N 3 5ZA C25 H253 SING N N 4 5ZA C23 O24 SING N N 5 5ZA C23 CA1 SING N N 6 5ZA C23 H23 SING N N 7 5ZA O24 H24 SING N N 8 5ZA CA1 N1 SING N N 9 5ZA CA1 C1 SING N N 10 5ZA CA1 HA1 SING N N 11 5ZA N1 H SING N N 12 5ZA N1 H2 SING N N 13 5ZA C1 N2 DOUB N N 14 5ZA C1 N3 SING N N 15 5ZA N2 CA2 SING N N 16 5ZA CA2 C11 DOUB N Z 17 5ZA CA2 C2 SING N N 18 5ZA C11 C7 SING N N 19 5ZA C11 H11 SING N N 20 5ZA C7 C8 DOUB Y N 21 5ZA C7 C14 SING Y N 22 5ZA C8 N9 SING Y N 23 5ZA C8 H8 SING N N 24 5ZA N9 C6 SING Y N 25 5ZA N9 HN9 SING N N 26 5ZA C6 C5 DOUB Y N 27 5ZA C6 C14 SING Y N 28 5ZA C5 C4 SING Y N 29 5ZA C5 H5 SING N N 30 5ZA C4 C19 DOUB Y N 31 5ZA C4 H4 SING N N 32 5ZA C19 C16 SING Y N 33 5ZA C19 H3 SING N N 34 5ZA C16 N10 SING N N 35 5ZA C16 C14 DOUB Y N 36 5ZA N10 H101 SING N N 37 5ZA N10 H102 SING N N 38 5ZA C2 O2 DOUB N N 39 5ZA C2 N3 SING N N 40 5ZA N3 CA3 SING N N 41 5ZA CA3 C3 SING N N 42 5ZA CA3 HA31 SING N N 43 5ZA CA3 HA32 SING N N 44 5ZA C3 O3 DOUB N N 45 5ZA C3 OXT SING N N 46 5ZA OXT HXT SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5ZA SMILES ACDLabs 10.04 "O=C1N(C(=N/C1=C\c3c2c(cccc2nc3)N)C(N)C(O)C)CC(=O)O" 5ZA SMILES_CANONICAL CACTVS 3.341 "C[C@@H](O)[C@H](N)C1=N\C(=C/c2c[nH]c3cccc(N)c23)C(=O)N1CC(O)=O" 5ZA SMILES CACTVS 3.341 "C[CH](O)[CH](N)C1=NC(=Cc2c[nH]c3cccc(N)c23)C(=O)N1CC(O)=O" 5ZA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]([C@@H](C1=N/C(=C\c2c[nH]c3c2c(ccc3)N)/C(=O)N1CC(=O)O)N)O" 5ZA SMILES "OpenEye OEToolkits" 1.5.0 "CC(C(C1=NC(=Cc2c[nH]c3c2c(ccc3)N)C(=O)N1CC(=O)O)N)O" 5ZA InChI InChI 1.03 "InChI=1S/C17H19N5O4/c1-8(23)15(19)16-21-12(17(26)22(16)7-13(24)25)5-9-6-20-11-4-2-3-10(18)14(9)11/h2-6,8,15,20,23H,7,18-19H2,1H3,(H,24,25)/b12-5-/t8-,15+/m1/s1" 5ZA InChIKey InChI 1.03 JUWJATLABHTRDF-JURWUIOISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5ZA "SYSTEMATIC NAME" ACDLabs 10.04 "{(4Z)-2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-[(4-amino-1H-indol-3-yl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid" 5ZA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[(4Z)-2-[(1R,2R)-1-amino-2-hydroxy-propyl]-4-[(4-amino-1H-indol-3-yl)methylidene]-5-oxo-imidazol-1-yl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5ZA "Create component" 2003-04-22 RCSB 5ZA "Modify descriptor" 2011-06-04 RCSB 5ZA "Modify backbone" 2023-11-03 PDBE 5ZA "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 5ZA _pdbx_chem_comp_pcm.modified_residue_id "THR, TRP, GLY" _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Chromophore/chromophore-like _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #