data_5ZF # _chem_comp.id 5ZF _chem_comp.name "N-([1,1'-biphenyl]-4-yl)-2-chloro-N-[(1R)-2-oxo-2-{[(1S)-1-phenylethyl]amino}-1-(pyridin-3-yl)ethyl]acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H26 Cl N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 483.989 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5ZF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RN1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5ZF C10 C1 C 0 1 Y N N N N N 12.757 -3.195 26.759 -7.040 -3.491 0.363 C10 5ZF 1 5ZF C13 C2 C 0 1 Y N N N N N 13.093 -2.193 24.215 -6.778 -0.744 0.091 C13 5ZF 2 5ZF C15 C3 C 0 1 Y N N N N N 9.548 -1.350 21.614 -2.900 1.001 -0.153 C15 5ZF 3 5ZF C17 C4 C 0 1 Y N N N N N 5.845 0.679 20.134 1.268 0.979 1.469 C17 5ZF 4 5ZF C20 C5 C 0 1 Y N N N N N 4.949 1.603 17.658 2.333 2.651 3.331 C20 5ZF 5 5ZF C21 C6 C 0 1 Y N N N N N 4.242 1.942 18.799 2.802 1.353 3.253 C21 5ZF 6 5ZF C22 C7 C 0 1 Y N N N N N 4.740 1.490 20.035 2.263 0.496 2.306 C22 5ZF 7 5ZF C26 C8 C 0 1 N N N N N N 8.141 4.481 23.453 4.556 0.457 -1.820 C26 5ZF 8 5ZF C28 C9 C 0 1 Y N N N N N 11.202 2.979 23.374 5.511 -2.774 -1.512 C28 5ZF 9 5ZF O01 O1 O 0 1 N N N N N N 5.434 -2.045 20.159 0.765 2.246 -1.248 O01 5ZF 10 5ZF C02 C10 C 0 1 N N N N N N 6.534 -2.170 20.758 -0.327 1.943 -0.815 C02 5ZF 11 5ZF N03 N1 N 0 1 N N N N N N 7.077 -1.087 21.435 -0.497 0.766 -0.182 N03 5ZF 12 5ZF C04 C11 C 0 1 Y N N N N N 8.253 -1.328 22.128 -1.770 0.192 -0.102 C04 5ZF 13 5ZF C05 C12 C 0 1 Y N N N N N 8.175 -1.744 23.471 -1.904 -1.185 0.028 C05 5ZF 14 5ZF C06 C13 C 0 1 Y N N N N N 9.259 -2.051 24.264 -3.158 -1.752 0.107 C06 5ZF 15 5ZF C07 C14 C 0 1 Y N N N N N 10.579 -2.032 23.783 -4.292 -0.943 0.056 C07 5ZF 16 5ZF C08 C15 C 0 1 Y N N N N N 11.753 -2.378 24.658 -5.643 -1.552 0.141 C08 5ZF 17 5ZF C09 C16 C 0 1 Y N N N N N 11.634 -2.890 25.947 -5.781 -2.932 0.278 C09 5ZF 18 5ZF C11 C17 C 0 1 Y N N N N N 14.067 -3.003 26.266 -8.163 -2.686 0.307 C11 5ZF 19 5ZF C12 C18 C 0 1 Y N N N N N 14.204 -2.489 24.982 -8.032 -1.316 0.171 C12 5ZF 20 5ZF C14 C19 C 0 1 Y N N N N N 10.663 -1.673 22.410 -4.156 0.438 -0.075 C14 5ZF 21 5ZF C16 C20 C 0 1 N N R N N N 6.443 0.185 21.508 0.651 0.086 0.424 C16 5ZF 22 5ZF C18 C21 C 0 1 Y N N N N N 6.485 0.404 18.923 0.846 2.287 1.610 C18 5ZF 23 5ZF N19 N2 N 0 1 Y N N N N N 6.076 0.813 17.724 1.382 3.075 2.522 N19 5ZF 24 5ZF C23 C22 C 0 1 N N N N N N 7.638 1.215 21.722 1.672 -0.221 -0.641 C23 5ZF 25 5ZF N24 N3 N 0 1 N N N N N N 7.621 2.254 22.671 2.932 -0.548 -0.292 N24 5ZF 26 5ZF C25 C23 C 0 1 N N S N N N 8.748 3.222 22.804 3.924 -0.846 -1.328 C25 5ZF 27 5ZF C27 C24 C 0 1 Y N N N N N 9.883 2.640 23.657 4.995 -1.738 -0.755 C27 5ZF 28 5ZF C29 C25 C 0 1 Y N N N N N 12.315 2.484 24.099 6.493 -3.592 -0.986 C29 5ZF 29 5ZF C30 C26 C 0 1 Y N N N N N 12.106 1.604 25.132 6.960 -3.375 0.297 C30 5ZF 30 5ZF C31 C27 C 0 1 Y N N N N N 10.791 1.228 25.422 6.445 -2.339 1.054 C31 5ZF 31 5ZF C32 C28 C 0 1 Y N N N N N 9.703 1.744 24.690 5.462 -1.521 0.528 C32 5ZF 32 5ZF O33 O2 O 0 1 N N N N N N 8.620 1.127 20.927 1.360 -0.173 -1.812 O33 5ZF 33 5ZF C34 C29 C 0 1 N N N N N N 7.212 -3.504 20.537 -1.492 2.883 -0.986 C34 5ZF 34 5ZF CL35 CL1 CL 0 0 N N N N N N 5.868 -4.622 20.313 -0.933 4.393 -1.795 CL35 5ZF 35 5ZF H1 H1 H 0 1 N N N N N N 12.610 -3.576 27.759 -7.148 -4.561 0.469 H1 5ZF 36 5ZF H2 H2 H 0 1 N N N N N N 13.251 -1.799 23.222 -6.676 0.326 -0.015 H2 5ZF 37 5ZF H3 H3 H 0 1 N N N N N N 9.701 -1.112 20.572 -2.793 2.071 -0.250 H3 5ZF 38 5ZF H4 H4 H 0 1 N N N N N N 4.611 1.965 16.698 2.748 3.325 4.066 H4 5ZF 39 5ZF H5 H5 H 0 1 N N N N N N 3.340 2.533 18.742 3.582 1.013 3.918 H5 5ZF 40 5ZF H6 H6 H 0 1 N N N N N N 4.235 1.792 20.940 2.610 -0.523 2.222 H6 5ZF 41 5ZF H7 H7 H 0 1 N N N N N N 8.925 5.242 23.581 5.042 0.963 -0.985 H7 5ZF 42 5ZF H8 H8 H 0 1 N N N N N N 7.345 4.879 22.806 5.294 0.235 -2.590 H8 5ZF 43 5ZF H9 H9 H 0 1 N N N N N N 7.719 4.220 24.435 3.781 1.102 -2.234 H9 5ZF 44 5ZF H10 H10 H 0 1 N N N N N N 11.389 3.658 22.555 5.142 -2.947 -2.512 H10 5ZF 45 5ZF H11 H11 H 0 1 N N N N N N 7.193 -1.829 23.912 -1.025 -1.811 0.067 H11 5ZF 46 5ZF H12 H12 H 0 1 N N N N N N 9.087 -2.317 25.297 -3.262 -2.823 0.208 H12 5ZF 47 5ZF H13 H13 H 0 1 N N N N N N 10.645 -3.062 26.346 -4.905 -3.562 0.318 H13 5ZF 48 5ZF H14 H14 H 0 1 N N N N N N 14.931 -3.247 26.866 -9.146 -3.128 0.370 H14 5ZF 49 5ZF H15 H15 H 0 1 N N N N N N 15.191 -2.319 24.578 -8.912 -0.691 0.132 H15 5ZF 50 5ZF H16 H16 H 0 1 N N N N N N 11.640 -1.647 21.951 -5.033 1.066 -0.114 H16 5ZF 51 5ZF H17 H17 H 0 1 N N N N N N 5.702 0.265 22.317 0.320 -0.842 0.889 H17 5ZF 52 5ZF H18 H18 H 0 1 N N N N N N 7.386 -0.190 18.963 0.069 2.670 0.965 H18 5ZF 53 5ZF H19 H19 H 0 1 N N N N N N 6.829 2.346 23.275 3.181 -0.586 0.644 H19 5ZF 54 5ZF H20 H20 H 0 1 N N N N N N 9.138 3.481 21.808 3.438 -1.352 -2.162 H20 5ZF 55 5ZF H21 H21 H 0 1 N N N N N N 13.317 2.796 23.842 6.895 -4.401 -1.577 H21 5ZF 56 5ZF H22 H22 H 0 1 N N N N N N 12.934 1.213 25.704 7.727 -4.014 0.708 H22 5ZF 57 5ZF H23 H23 H 0 1 N N N N N N 10.605 0.528 26.223 6.810 -2.170 2.056 H23 5ZF 58 5ZF H24 H24 H 0 1 N N N N N N 8.702 1.430 24.945 5.060 -0.712 1.120 H24 5ZF 59 5ZF H25 H25 H 0 1 N N N N N N 7.816 -3.787 21.412 -2.258 2.405 -1.597 H25 5ZF 60 5ZF H26 H26 H 0 1 N N N N N N 7.852 -3.476 19.643 -1.908 3.127 -0.008 H26 5ZF 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5ZF C20 N19 DOUB Y N 1 5ZF C20 C21 SING Y N 2 5ZF N19 C18 SING Y N 3 5ZF C21 C22 DOUB Y N 4 5ZF C18 C17 DOUB Y N 5 5ZF C22 C17 SING Y N 6 5ZF C17 C16 SING N N 7 5ZF O01 C02 DOUB N N 8 5ZF CL35 C34 SING N N 9 5ZF C34 C02 SING N N 10 5ZF C02 N03 SING N N 11 5ZF O33 C23 DOUB N N 12 5ZF N03 C16 SING N N 13 5ZF N03 C04 SING N N 14 5ZF C16 C23 SING N N 15 5ZF C15 C04 DOUB Y N 16 5ZF C15 C14 SING Y N 17 5ZF C23 N24 SING N N 18 5ZF C04 C05 SING Y N 19 5ZF C14 C07 DOUB Y N 20 5ZF N24 C25 SING N N 21 5ZF C25 C26 SING N N 22 5ZF C25 C27 SING N N 23 5ZF C28 C27 DOUB Y N 24 5ZF C28 C29 SING Y N 25 5ZF C05 C06 DOUB Y N 26 5ZF C27 C32 SING Y N 27 5ZF C07 C06 SING Y N 28 5ZF C07 C08 SING N N 29 5ZF C29 C30 DOUB Y N 30 5ZF C13 C08 DOUB Y N 31 5ZF C13 C12 SING Y N 32 5ZF C08 C09 SING Y N 33 5ZF C32 C31 DOUB Y N 34 5ZF C12 C11 DOUB Y N 35 5ZF C30 C31 SING Y N 36 5ZF C09 C10 DOUB Y N 37 5ZF C11 C10 SING Y N 38 5ZF C10 H1 SING N N 39 5ZF C13 H2 SING N N 40 5ZF C15 H3 SING N N 41 5ZF C20 H4 SING N N 42 5ZF C21 H5 SING N N 43 5ZF C22 H6 SING N N 44 5ZF C26 H7 SING N N 45 5ZF C26 H8 SING N N 46 5ZF C26 H9 SING N N 47 5ZF C28 H10 SING N N 48 5ZF C05 H11 SING N N 49 5ZF C06 H12 SING N N 50 5ZF C09 H13 SING N N 51 5ZF C11 H14 SING N N 52 5ZF C12 H15 SING N N 53 5ZF C14 H16 SING N N 54 5ZF C16 H17 SING N N 55 5ZF C18 H18 SING N N 56 5ZF N24 H19 SING N N 57 5ZF C25 H20 SING N N 58 5ZF C29 H21 SING N N 59 5ZF C30 H22 SING N N 60 5ZF C31 H23 SING N N 61 5ZF C32 H24 SING N N 62 5ZF C34 H25 SING N N 63 5ZF C34 H26 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5ZF SMILES ACDLabs 12.01 "CC(NC(=O)C(N(C(=O)CCl)c1ccc(cc1)c1ccccc1)c1cccnc1)c1ccccc1" 5ZF InChI InChI 1.03 "InChI=1S/C29H26ClN3O2/c1-21(22-9-4-2-5-10-22)32-29(35)28(25-13-8-18-31-20-25)33(27(34)19-30)26-16-14-24(15-17-26)23-11-6-3-7-12-23/h2-18,20-21,28H,19H2,1H3,(H,32,35)/t21-,28+/m0/s1" 5ZF InChIKey InChI 1.03 XQECDPKLDAEYEC-RBTNQOKQSA-N 5ZF SMILES_CANONICAL CACTVS 3.385 "C[C@H](NC(=O)[C@H](N(C(=O)CCl)c1ccc(cc1)c2ccccc2)c3cccnc3)c4ccccc4" 5ZF SMILES CACTVS 3.385 "C[CH](NC(=O)[CH](N(C(=O)CCl)c1ccc(cc1)c2ccccc2)c3cccnc3)c4ccccc4" 5ZF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1ccccc1)NC(=O)[C@@H](c2cccnc2)N(c3ccc(cc3)c4ccccc4)C(=O)CCl" 5ZF SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1ccccc1)NC(=O)C(c2cccnc2)N(c3ccc(cc3)c4ccccc4)C(=O)CCl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5ZF "SYSTEMATIC NAME" ACDLabs 12.01 "N-([1,1'-biphenyl]-4-yl)-2-chloro-N-[(1R)-2-oxo-2-{[(1S)-1-phenylethyl]amino}-1-(pyridin-3-yl)ethyl]acetamide" 5ZF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-[2-chloranylethanoyl-(4-phenylphenyl)amino]-~{N}-[(1~{S})-1-phenylethyl]-2-pyridin-3-yl-ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5ZF "Create component" 2021-07-29 RCSB 5ZF "Initial release" 2021-09-08 RCSB 5ZF "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 5ZF _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C34 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #