data_5ZJ # _chem_comp.id 5ZJ _chem_comp.name "6-{4-[3-chloro-4-(trifluoromethyl)phenyl]piperazine-1-carbonyl}pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H14 Cl F3 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-29 _chem_comp.pdbx_modified_date 2021-11-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 402.756 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5ZJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RMZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5ZJ C20 C1 C 0 1 N N N 110.746 -6.839 106.064 -6.223 1.016 -0.715 C20 5ZJ 1 5ZJ C22 C2 C 0 1 N N N 110.268 -5.647 106.750 -5.319 -0.130 -0.860 C22 5ZJ 2 5ZJ C24 C3 C 0 1 N N N 100.629 -3.260 110.553 5.771 0.115 0.631 C24 5ZJ 3 5ZJ C13 C4 C 0 1 Y N N 102.107 -3.474 110.426 4.340 -0.172 0.252 C13 5ZJ 4 5ZJ C12 C5 C 0 1 Y N N 102.998 -2.654 111.122 3.717 -1.312 0.725 C12 5ZJ 5 5ZJ C14 C6 C 0 1 Y N N 102.657 -4.486 109.626 3.651 0.709 -0.563 C14 5ZJ 6 5ZJ C15 C7 C 0 1 Y N N 104.023 -4.677 109.516 2.340 0.448 -0.912 C15 5ZJ 7 5ZJ C17 C8 C 0 1 N N N 111.804 -7.555 108.195 -5.345 1.391 1.419 C17 5ZJ 8 5ZJ C1 C9 C 0 1 N N N 110.577 -5.463 108.062 -4.483 -0.429 0.169 C1 5ZJ 9 5ZJ C10 C10 C 0 1 Y N N 104.916 -3.838 110.218 1.714 -0.700 -0.442 C10 5ZJ 10 5ZJ C11 C11 C 0 1 Y N N 104.373 -2.824 111.029 2.407 -1.578 0.380 C11 5ZJ 11 5ZJ C2 C12 C 0 1 N N N 110.163 -4.291 108.913 -3.552 -1.578 0.067 C2 5ZJ 12 5ZJ C5 C13 C 0 1 N N N 108.161 -5.575 109.707 -1.460 -2.573 -0.740 C5 5ZJ 13 5ZJ C6 C14 C 0 1 N N N 106.775 -5.141 109.257 -0.072 -2.224 -0.190 C6 5ZJ 14 5ZJ C8 C15 C 0 1 N N N 107.189 -2.888 110.196 -0.489 0.153 -0.425 C8 5ZJ 15 5ZJ C9 C16 C 0 1 N N N 108.607 -3.323 110.545 -1.902 -0.099 -0.985 C9 5ZJ 16 5ZJ F25 F1 F 0 1 N N N 100.016 -3.043 109.361 5.837 1.337 1.311 F25 5ZJ 17 5ZJ F26 F2 F 0 1 N N N 100.014 -4.338 111.100 6.248 -0.906 1.460 F26 5ZJ 18 5ZJ F27 F3 F 0 1 N N N 100.342 -2.205 111.353 6.555 0.182 -0.525 F27 5ZJ 19 5ZJ N16 N1 N 0 1 N N N 111.312 -6.395 108.758 -4.509 0.346 1.308 N16 5ZJ 20 5ZJ N19 N2 N 0 1 N N N 111.489 -7.719 106.859 -6.192 1.729 0.431 N19 5ZJ 21 5ZJ N4 N3 N 0 1 N N N 109.050 -4.414 109.667 -2.352 -1.423 -0.529 N4 5ZJ 22 5ZJ N7 N4 N 0 1 N N N 106.291 -4.043 110.118 0.388 -0.966 -0.793 N7 5ZJ 23 5ZJ O18 O1 O 0 1 N N N 112.465 -8.372 108.828 -5.337 2.050 2.442 O18 5ZJ 24 5ZJ O21 O2 O 0 1 N N N 110.532 -7.117 104.880 -6.985 1.322 -1.613 O21 5ZJ 25 5ZJ O3 O3 O 0 1 N N N 110.797 -3.237 108.765 -3.869 -2.660 0.519 O3 5ZJ 26 5ZJ CL23 CL1 CL 0 0 N N N 101.613 -5.569 108.704 4.436 2.143 -1.149 CL23 5ZJ 27 5ZJ H1 H1 H 0 1 N N N 109.674 -4.916 106.222 -5.318 -0.723 -1.763 H1 5ZJ 28 5ZJ H2 H2 H 0 1 N N N 102.607 -1.867 111.749 4.256 -1.995 1.365 H2 5ZJ 29 5ZJ H3 H3 H 0 1 N N N 104.407 -5.470 108.892 1.802 1.136 -1.548 H3 5ZJ 30 5ZJ H4 H4 H 0 1 N N N 105.032 -2.172 111.584 1.922 -2.471 0.747 H4 5ZJ 31 5ZJ H5 H5 H 0 1 N N N 108.111 -5.968 110.733 -1.387 -2.789 -1.806 H5 5ZJ 32 5ZJ H6 H6 H 0 1 N N N 108.542 -6.356 109.033 -1.854 -3.443 -0.216 H6 5ZJ 33 5ZJ H7 H7 H 0 1 N N N 106.822 -4.794 108.214 -0.128 -2.110 0.892 H7 5ZJ 34 5ZJ H8 H8 H 0 1 N N N 106.084 -5.994 109.329 0.627 -3.023 -0.436 H8 5ZJ 35 5ZJ H9 H9 H 0 1 N N N 107.199 -2.374 109.224 -0.093 1.080 -0.841 H9 5ZJ 36 5ZJ H10 H10 H 0 1 N N N 106.823 -2.199 110.971 -0.537 0.233 0.661 H10 5ZJ 37 5ZJ H11 H11 H 0 1 N N N 108.631 -3.668 111.589 -2.584 0.668 -0.617 H11 5ZJ 38 5ZJ H12 H12 H 0 1 N N N 109.286 -2.466 110.426 -1.874 -0.072 -2.074 H12 5ZJ 39 5ZJ H13 H13 H 0 1 N N N 111.500 -6.222 109.725 -3.912 0.133 2.042 H13 5ZJ 40 5ZJ H14 H14 H 0 1 N N N 111.826 -8.550 106.416 -6.784 2.489 0.542 H14 5ZJ 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5ZJ O21 C20 DOUB N N 1 5ZJ C20 C22 SING N N 2 5ZJ C20 N19 SING N N 3 5ZJ C22 C1 DOUB N N 4 5ZJ N19 C17 SING N N 5 5ZJ C1 N16 SING N N 6 5ZJ C1 C2 SING N N 7 5ZJ C17 N16 SING N N 8 5ZJ C17 O18 DOUB N N 9 5ZJ CL23 C14 SING N N 10 5ZJ O3 C2 DOUB N N 11 5ZJ C2 N4 SING N N 12 5ZJ C6 C5 SING N N 13 5ZJ C6 N7 SING N N 14 5ZJ F25 C24 SING N N 15 5ZJ C15 C14 DOUB Y N 16 5ZJ C15 C10 SING Y N 17 5ZJ C14 C13 SING Y N 18 5ZJ N4 C5 SING N N 19 5ZJ N4 C9 SING N N 20 5ZJ N7 C8 SING N N 21 5ZJ N7 C10 SING N N 22 5ZJ C8 C9 SING N N 23 5ZJ C10 C11 DOUB Y N 24 5ZJ C13 C24 SING N N 25 5ZJ C13 C12 DOUB Y N 26 5ZJ C24 F26 SING N N 27 5ZJ C24 F27 SING N N 28 5ZJ C11 C12 SING Y N 29 5ZJ C22 H1 SING N N 30 5ZJ C12 H2 SING N N 31 5ZJ C15 H3 SING N N 32 5ZJ C11 H4 SING N N 33 5ZJ C5 H5 SING N N 34 5ZJ C5 H6 SING N N 35 5ZJ C6 H7 SING N N 36 5ZJ C6 H8 SING N N 37 5ZJ C8 H9 SING N N 38 5ZJ C8 H10 SING N N 39 5ZJ C9 H11 SING N N 40 5ZJ C9 H12 SING N N 41 5ZJ N16 H13 SING N N 42 5ZJ N19 H14 SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5ZJ SMILES ACDLabs 12.01 "O=C(C1=CC(=O)NC(=O)N1)N1CCN(CC1)c1ccc(c(Cl)c1)C(F)(F)F" 5ZJ InChI InChI 1.03 "InChI=1S/C16H14ClF3N4O3/c17-11-7-9(1-2-10(11)16(18,19)20)23-3-5-24(6-4-23)14(26)12-8-13(25)22-15(27)21-12/h1-2,7-8H,3-6H2,(H2,21,22,25,27)" 5ZJ InChIKey InChI 1.03 RILFZGUYWVKTMS-UHFFFAOYSA-N 5ZJ SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)c1ccc(cc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3" 5ZJ SMILES CACTVS 3.385 "FC(F)(F)c1ccc(cc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3" 5ZJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)Cl)C(F)(F)F" 5ZJ SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)Cl)C(F)(F)F" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5ZJ "SYSTEMATIC NAME" ACDLabs 12.01 "6-{4-[3-chloro-4-(trifluoromethyl)phenyl]piperazine-1-carbonyl}pyrimidine-2,4(1H,3H)-dione" 5ZJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[4-[3-chloranyl-4-(trifluoromethyl)phenyl]piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5ZJ "Create component" 2021-07-29 RCSB 5ZJ "Initial release" 2021-11-10 RCSB ##