data_5ZT # _chem_comp.id 5ZT _chem_comp.name "6-{4-[3-chloro-4-(hydroxymethyl)phenyl]piperazine-1-carbonyl}pyrimidine-2,4(3H,5H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H17 Cl N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-30 _chem_comp.pdbx_modified_date 2021-11-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 364.784 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5ZT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RNK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5ZT C2 C1 C 0 1 N N N 14.188 -0.420 18.047 2.777 1.578 -0.301 C2 5ZT 1 5ZT C6 C2 C 0 1 N N N 10.712 -1.255 18.469 -0.217 -0.124 0.545 C6 5ZT 2 5ZT C5 C3 C 0 1 N N N 12.137 -1.657 18.826 1.184 0.269 1.027 C5 5ZT 3 5ZT N7 N1 N 0 1 N N N 10.268 -0.154 19.345 -1.128 1.016 0.717 N7 5ZT 4 5ZT C8 C4 C 0 1 N N N 11.139 1.017 19.211 -0.717 2.156 -0.113 C8 5ZT 5 5ZT C1 C5 C 0 1 N N N 14.644 -1.614 17.238 3.764 0.476 -0.165 C1 5ZT 6 5ZT C10 C6 C 0 1 Y N N 8.875 0.064 19.452 -2.447 0.648 0.443 C10 5ZT 7 5ZT C11 C7 C 0 1 Y N N 8.319 0.924 20.414 -3.467 1.585 0.547 C11 5ZT 8 5ZT C12 C8 C 0 1 Y N N 6.941 1.113 20.495 -4.771 1.218 0.275 C12 5ZT 9 5ZT C13 C9 C 0 1 Y N N 6.046 0.469 19.639 -5.062 -0.080 -0.100 C13 5ZT 10 5ZT C14 C10 C 0 1 Y N N 6.622 -0.386 18.686 -4.048 -1.017 -0.205 C14 5ZT 11 5ZT C15 C11 C 0 1 Y N N 7.988 -0.598 18.578 -2.741 -0.655 0.060 C15 5ZT 12 5ZT C17 C12 C 0 1 N N N 15.940 -3.664 17.410 4.430 -1.511 0.820 C17 5ZT 13 5ZT C20 C13 C 0 1 N N N 14.846 -3.032 15.277 5.970 -0.714 -0.760 C20 5ZT 14 5ZT C22 C14 C 0 1 N N N 14.344 -1.841 15.937 5.036 0.460 -0.991 C22 5ZT 15 5ZT C23 C15 C 0 1 N N N 4.554 0.681 19.734 -6.485 -0.476 -0.396 C23 5ZT 16 5ZT C9 C16 C 0 1 N N N 12.584 0.648 19.540 0.664 2.643 0.342 C9 5ZT 17 5ZT N16 N2 N 0 1 N N N 15.417 -2.505 17.944 3.566 -0.502 0.669 N16 5ZT 18 5ZT N19 N3 N 0 1 N N N 15.622 -3.868 16.083 5.581 -1.638 0.147 N19 5ZT 19 5ZT N4 N4 N 0 1 N N N 13.029 -0.492 18.727 1.589 1.500 0.331 N4 5ZT 20 5ZT O18 O1 O 0 1 N N N 16.629 -4.441 18.061 4.151 -2.375 1.627 O18 5ZT 21 5ZT O21 O2 O 0 1 N N N 14.635 -3.332 14.101 7.013 -0.822 -1.368 O21 5ZT 22 5ZT O24 O3 O 0 1 N N N 4.278 1.670 20.722 -7.341 0.654 -0.219 O24 5ZT 23 5ZT O3 O4 O 0 1 N N N 14.920 0.585 18.037 3.043 2.551 -0.976 O3 5ZT 24 5ZT CL25 CL1 CL 0 0 N N N 5.574 -1.255 17.547 -4.418 -2.646 -0.676 CL25 5ZT 25 5ZT H1 H1 H 0 1 N N N 10.678 -0.924 17.421 -0.175 -0.401 -0.508 H1 5ZT 26 5ZT H2 H2 H 0 1 N N N 10.045 -2.119 18.602 -0.579 -0.970 1.130 H2 5ZT 27 5ZT H3 H3 H 0 1 N N N 12.159 -2.046 19.855 1.165 0.447 2.102 H3 5ZT 28 5ZT H4 H4 H 0 1 N N N 12.480 -2.438 18.131 1.887 -0.532 0.800 H4 5ZT 29 5ZT H5 H5 H 0 1 N N N 11.087 1.391 18.178 -0.668 1.848 -1.157 H5 5ZT 30 5ZT H6 H6 H 0 1 N N N 10.799 1.802 19.903 -1.441 2.964 -0.005 H6 5ZT 31 5ZT H7 H7 H 0 1 N N N 8.969 1.446 21.100 -3.241 2.599 0.841 H7 5ZT 32 5ZT H8 H8 H 0 1 N N N 6.551 1.782 21.248 -5.564 1.947 0.356 H8 5ZT 33 5ZT H9 H9 H 0 1 N N N 8.373 -1.270 17.825 -1.950 -1.386 -0.022 H9 5ZT 34 5ZT H10 H10 H 0 1 N N N 14.722 -0.979 15.368 4.756 0.470 -2.044 H10 5ZT 35 5ZT H11 H11 H 0 1 N N N 13.247 -1.876 15.865 5.586 1.378 -0.783 H11 5ZT 36 5ZT H12 H12 H 0 1 N N N 4.168 1.018 18.760 -6.558 -0.830 -1.424 H12 5ZT 37 5ZT H13 H13 H 0 1 N N N 4.066 -0.264 20.015 -6.790 -1.272 0.284 H13 5ZT 38 5ZT H14 H14 H 0 1 N N N 12.655 0.381 20.605 1.024 3.412 -0.341 H14 5ZT 39 5ZT H15 H15 H 0 1 N N N 13.233 1.512 19.335 0.594 3.052 1.350 H15 5ZT 40 5ZT H16 H16 H 0 1 N N N 15.983 -4.697 15.656 6.152 -2.403 0.321 H16 5ZT 41 5ZT H17 H17 H 0 1 N N N 3.340 1.804 20.783 -8.275 0.472 -0.393 H17 5ZT 42 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5ZT O21 C20 DOUB N N 1 5ZT C20 C22 SING N N 2 5ZT C20 N19 SING N N 3 5ZT C22 C1 SING N N 4 5ZT N19 C17 SING N N 5 5ZT C1 N16 DOUB N N 6 5ZT C1 C2 SING N N 7 5ZT C17 N16 SING N N 8 5ZT C17 O18 DOUB N N 9 5ZT CL25 C14 SING N N 10 5ZT O3 C2 DOUB N N 11 5ZT C2 N4 SING N N 12 5ZT C6 C5 SING N N 13 5ZT C6 N7 SING N N 14 5ZT C15 C14 DOUB Y N 15 5ZT C15 C10 SING Y N 16 5ZT C14 C13 SING Y N 17 5ZT N4 C5 SING N N 18 5ZT N4 C9 SING N N 19 5ZT C8 N7 SING N N 20 5ZT C8 C9 SING N N 21 5ZT N7 C10 SING N N 22 5ZT C10 C11 DOUB Y N 23 5ZT C13 C23 SING N N 24 5ZT C13 C12 DOUB Y N 25 5ZT C23 O24 SING N N 26 5ZT C11 C12 SING Y N 27 5ZT C6 H1 SING N N 28 5ZT C6 H2 SING N N 29 5ZT C5 H3 SING N N 30 5ZT C5 H4 SING N N 31 5ZT C8 H5 SING N N 32 5ZT C8 H6 SING N N 33 5ZT C11 H7 SING N N 34 5ZT C12 H8 SING N N 35 5ZT C15 H9 SING N N 36 5ZT C22 H10 SING N N 37 5ZT C22 H11 SING N N 38 5ZT C23 H12 SING N N 39 5ZT C23 H13 SING N N 40 5ZT C9 H14 SING N N 41 5ZT C9 H15 SING N N 42 5ZT N19 H16 SING N N 43 5ZT O24 H17 SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5ZT SMILES ACDLabs 12.01 "O=C(C=1CC(=O)NC(=O)N=1)N1CCN(CC1)c1ccc(CO)c(Cl)c1" 5ZT InChI InChI 1.03 "InChI=1S/C16H17ClN4O4/c17-12-7-11(2-1-10(12)9-22)20-3-5-21(6-4-20)15(24)13-8-14(23)19-16(25)18-13/h1-2,7,22H,3-6,8-9H2,(H,19,23,25)" 5ZT InChIKey InChI 1.03 LOQJVSKMCQMDKR-UHFFFAOYSA-N 5ZT SMILES_CANONICAL CACTVS 3.385 "OCc1ccc(cc1Cl)N2CCN(CC2)C(=O)C3=NC(=O)NC(=O)C3" 5ZT SMILES CACTVS 3.385 "OCc1ccc(cc1Cl)N2CCN(CC2)C(=O)C3=NC(=O)NC(=O)C3" 5ZT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N2CCN(CC2)C(=O)C3=NC(=O)NC(=O)C3)Cl)CO" 5ZT SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N2CCN(CC2)C(=O)C3=NC(=O)NC(=O)C3)Cl)CO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5ZT "SYSTEMATIC NAME" ACDLabs 12.01 "6-{4-[3-chloro-4-(hydroxymethyl)phenyl]piperazine-1-carbonyl}pyrimidine-2,4(3H,5H)-dione" 5ZT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[4-[3-chloranyl-4-(hydroxymethyl)phenyl]piperazin-1-yl]carbonyl-5~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5ZT "Create component" 2021-07-30 RCSB 5ZT "Initial release" 2021-11-10 RCSB ##