data_5ZV # _chem_comp.id 5ZV _chem_comp.name "[[(2~{R},3~{R},4~{S},5~{R})-5-(3-aminocarbonylpyridin-1-yl)-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H27 F N7 O13 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-02-10 _chem_comp.pdbx_modified_date 2023-01-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 666.424 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5ZV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 7WR5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5ZV O7N O1 O 0 1 N N N 19.328 28.897 42.744 ? ? ? O7N 5ZV 1 5ZV C7N C1 C 0 1 N N N 18.469 28.893 43.562 ? ? ? C7N 5ZV 2 5ZV N7N N1 N 0 1 N N N 18.213 27.690 44.333 ? ? ? N7N 5ZV 3 5ZV C3N C2 C 0 1 Y N N 17.649 30.162 43.805 ? ? ? C3N 5ZV 4 5ZV C4N C3 C 0 1 Y N N 17.455 31.070 42.778 ? ? ? C4N 5ZV 5 5ZV C5N C4 C 0 1 Y N N 16.708 32.204 43.045 ? ? ? C5N 5ZV 6 5ZV C6N C5 C 0 1 Y N N 16.190 32.397 44.316 ? ? ? C6N 5ZV 7 5ZV C2N C6 C 0 1 Y N N 17.093 30.418 45.049 ? ? ? C2N 5ZV 8 5ZV N1N N2 N 1 1 Y N N 16.375 31.507 45.278 ? ? ? N1N 5ZV 9 5ZV C1D C7 C 0 1 N N R 15.843 31.714 46.599 ? ? ? C1D 5ZV 10 5ZV C2D C8 C 0 1 N N S 14.224 32.170 46.690 ? ? ? C2D 5ZV 11 5ZV F2D F1 F 0 1 N N N 13.610 32.330 45.418 ? ? ? F2D 5ZV 12 5ZV C3D C9 C 0 1 N N R 13.600 31.277 47.347 ? ? ? C3D 5ZV 13 5ZV O3D O2 O 0 1 N N N 12.659 31.919 48.326 ? ? ? O3D 5ZV 14 5ZV O4D O3 O 0 1 N N N 15.985 30.630 47.277 ? ? ? O4D 5ZV 15 5ZV C4D C10 C 0 1 N N R 14.697 30.466 48.123 ? ? ? C4D 5ZV 16 5ZV C5D C11 C 0 1 N N N 14.353 29.132 48.183 ? ? ? C5D 5ZV 17 5ZV O5D O4 O 0 1 N N N 15.523 28.376 48.053 ? ? ? O5D 5ZV 18 5ZV PN P1 P 0 1 N N N 15.558 27.134 46.973 ? ? ? PN 5ZV 19 5ZV O1N O5 O -1 1 N N N 16.855 26.375 47.120 ? ? ? O1N 5ZV 20 5ZV O2N O6 O 0 1 N N N 15.465 27.688 45.572 ? ? ? O2N 5ZV 21 5ZV O3 O7 O 0 1 N N N 14.285 26.121 47.253 ? ? ? O3 5ZV 22 5ZV PA P2 P 0 1 N N N 13.876 25.537 48.738 ? ? ? PA 5ZV 23 5ZV O1A O8 O 0 1 N N N 12.754 26.366 49.318 ? ? ? O1A 5ZV 24 5ZV O2A O9 O 0 1 N N N 15.076 25.593 49.653 ? ? ? O2A 5ZV 25 5ZV O5B O10 O 0 1 N N N 13.379 23.975 48.586 ? ? ? O5B 5ZV 26 5ZV C5B C12 C 0 1 N N N 13.972 23.188 47.595 ? ? ? C5B 5ZV 27 5ZV C4B C13 C 0 1 N N R 15.294 22.671 48.126 ? ? ? C4B 5ZV 28 5ZV O4B O11 O 0 1 N N N 15.286 21.047 48.184 ? ? ? O4B 5ZV 29 5ZV C1B C14 C 0 1 N N R 16.085 20.613 47.288 ? ? ? C1B 5ZV 30 5ZV C2B C15 C 0 1 N N R 16.414 21.838 46.387 ? ? ? C2B 5ZV 31 5ZV O2B O12 O 0 1 N N N 17.696 21.759 45.940 ? ? ? O2B 5ZV 32 5ZV C3B C16 C 0 1 N N S 16.255 23.020 47.320 ? ? ? C3B 5ZV 33 5ZV O3B O13 O 0 1 N N N 17.523 23.245 48.106 ? ? ? O3B 5ZV 34 5ZV N9A N3 N 0 1 Y N N 15.437 19.533 46.494 ? ? ? N9A 5ZV 35 5ZV C8A C17 C 0 1 Y N N 14.786 19.673 45.350 ? ? ? C8A 5ZV 36 5ZV N7A N4 N 0 1 Y N N 14.350 18.490 44.941 ? ? ? N7A 5ZV 37 5ZV C5A C18 C 0 1 Y N N 14.723 17.563 45.839 ? ? ? C5A 5ZV 38 5ZV C6A C19 C 0 1 Y N N 14.571 16.171 45.972 ? ? ? C6A 5ZV 39 5ZV N6A N5 N 0 1 N N N 13.851 15.420 44.960 ? ? ? N6A 5ZV 40 5ZV C4A C20 C 0 1 Y N N 15.414 18.231 46.824 ? ? ? C4A 5ZV 41 5ZV N3A N6 N 0 1 Y N N 15.908 17.534 47.857 ? ? ? N3A 5ZV 42 5ZV C2A C21 C 0 1 Y N N 15.740 16.224 47.944 ? ? ? C2A 5ZV 43 5ZV N1A N7 N 0 1 Y N N 15.082 15.539 47.019 ? ? ? N1A 5ZV 44 5ZV H1 H1 H 0 1 N N N 18.760 26.868 44.174 ? ? ? H1 5ZV 45 5ZV H2 H2 H 0 1 N N N 17.490 27.683 45.023 ? ? ? H2 5ZV 46 5ZV H3 H3 H 0 1 N N N 17.874 30.898 41.798 ? ? ? H3 5ZV 47 5ZV H4 H4 H 0 1 N N N 16.530 32.933 42.269 ? ? ? H4 5ZV 48 5ZV H5 H5 H 0 1 N N N 15.624 33.292 44.526 ? ? ? H5 5ZV 49 5ZV H6 H6 H 0 1 N N N 17.249 29.712 45.851 ? ? ? H6 5ZV 50 5ZV H7 H7 H 0 1 N N N 16.404 32.535 47.069 ? ? ? H7 5ZV 51 5ZV H8 H8 H 0 1 N N N 14.212 33.135 47.217 ? ? ? H8 5ZV 52 5ZV H9 H9 H 0 1 N N N 13.040 30.581 46.705 ? ? ? H9 5ZV 53 5ZV H10 H10 H 0 1 N N N 12.198 31.245 48.811 ? ? ? H10 5ZV 54 5ZV H11 H11 H 0 1 N N N 14.846 30.907 49.120 ? ? ? H11 5ZV 55 5ZV H12 H12 H 0 1 N N N 13.659 28.889 47.365 ? ? ? H12 5ZV 56 5ZV H13 H13 H 0 1 N N N 13.873 28.914 49.148 ? ? ? H13 5ZV 57 5ZV H15 H15 H 0 1 N N N 14.876 26.139 50.405 ? ? ? H15 5ZV 58 5ZV H16 H16 H 0 1 N N N 14.145 23.793 46.693 ? ? ? H16 5ZV 59 5ZV H17 H17 H 0 1 N N N 13.314 22.342 47.348 ? ? ? H17 5ZV 60 5ZV H18 H18 H 0 1 N N N 15.445 23.045 49.149 ? ? ? H18 5ZV 61 5ZV H19 H19 H 0 1 N N N 17.026 20.234 47.712 ? ? ? H19 5ZV 62 5ZV H20 H20 H 0 1 N N N 15.683 21.900 45.567 ? ? ? H20 5ZV 63 5ZV H21 H21 H 0 1 N N N 17.887 22.511 45.391 ? ? ? H21 5ZV 64 5ZV H22 H22 H 0 1 N N N 16.018 23.921 46.736 ? ? ? H22 5ZV 65 5ZV H23 H23 H 0 1 N N N 17.409 23.989 48.686 ? ? ? H23 5ZV 66 5ZV H24 H24 H 0 1 N N N 14.634 20.607 44.830 ? ? ? H24 5ZV 67 5ZV H25 H25 H 0 1 N N N 13.837 14.452 45.210 ? ? ? H25 5ZV 68 5ZV H26 H26 H 0 1 N N N 12.913 15.761 44.896 ? ? ? H26 5ZV 69 5ZV H27 H27 H 0 1 N N N 16.151 15.698 48.793 ? ? ? H27 5ZV 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5ZV O7N C7N DOUB N N 1 5ZV C4N C5N SING Y N 2 5ZV C4N C3N DOUB Y N 3 5ZV C5N C6N DOUB Y N 4 5ZV C7N C3N SING N N 5 5ZV C7N N7N SING N N 6 5ZV C3N C2N SING Y N 7 5ZV C6N N1N SING Y N 8 5ZV N7A C8A DOUB Y N 9 5ZV N7A C5A SING Y N 10 5ZV N6A C6A SING N N 11 5ZV C2N N1N DOUB Y N 12 5ZV N1N C1D SING N N 13 5ZV C8A N9A SING Y N 14 5ZV F2D C2D SING N N 15 5ZV O2N PN DOUB N N 16 5ZV C5A C6A DOUB Y N 17 5ZV C5A C4A SING Y N 18 5ZV O2B C2B SING N N 19 5ZV C6A N1A SING Y N 20 5ZV C2B C1B SING N N 21 5ZV C2B C3B SING N N 22 5ZV N9A C4A SING Y N 23 5ZV N9A C1B SING N N 24 5ZV C1D C2D SING N N 25 5ZV C1D O4D SING N N 26 5ZV C2D C3D SING N N 27 5ZV C4A N3A DOUB Y N 28 5ZV PN O1N SING N N 29 5ZV PN O3 SING N N 30 5ZV PN O5D SING N N 31 5ZV N1A C2A DOUB Y N 32 5ZV O3 PA SING N N 33 5ZV O4D C4D SING N N 34 5ZV C1B O4B SING N N 35 5ZV C3B O3B SING N N 36 5ZV C3B C4B SING N N 37 5ZV C3D C4D SING N N 38 5ZV C3D O3D SING N N 39 5ZV C5B C4B SING N N 40 5ZV C5B O5B SING N N 41 5ZV N3A C2A SING Y N 42 5ZV O5D C5D SING N N 43 5ZV C4D C5D SING N N 44 5ZV C4B O4B SING N N 45 5ZV O5B PA SING N N 46 5ZV PA O1A DOUB N N 47 5ZV PA O2A SING N N 48 5ZV N7N H1 SING N N 49 5ZV N7N H2 SING N N 50 5ZV C4N H3 SING N N 51 5ZV C5N H4 SING N N 52 5ZV C6N H5 SING N N 53 5ZV C2N H6 SING N N 54 5ZV C1D H7 SING N N 55 5ZV C2D H8 SING N N 56 5ZV C3D H9 SING N N 57 5ZV O3D H10 SING N N 58 5ZV C4D H11 SING N N 59 5ZV C5D H12 SING N N 60 5ZV C5D H13 SING N N 61 5ZV O2A H15 SING N N 62 5ZV C5B H16 SING N N 63 5ZV C5B H17 SING N N 64 5ZV C4B H18 SING N N 65 5ZV C1B H19 SING N N 66 5ZV C2B H20 SING N N 67 5ZV O2B H21 SING N N 68 5ZV C3B H22 SING N N 69 5ZV O3B H23 SING N N 70 5ZV C8A H24 SING N N 71 5ZV N6A H25 SING N N 72 5ZV N6A H26 SING N N 73 5ZV C2A H27 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5ZV InChI InChI 1.03 "InChI=1S/C21H27FN7O13P2/c22-12-14(30)10(40-20(12)28-3-1-2-9(4-28)18(24)33)5-38-43(34,35)42-44(36,37)39-6-11-15(31)16(32)21(41-11)29-8-27-13-17(23)25-7-26-19(13)29/h1-4,7-8,10-12,14-16,20-21,30-32H,5-6H2,(H2,24,33)(H,34,35)(H,36,37)(H2,23,25,26)/t10-,11-,12+,14-,15-,16-,20-,21-/m1/s1" 5ZV InChIKey InChI 1.03 KKCPXEYWHWVQJS-IVHCLJLKSA-N 5ZV SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1ccc[n](c1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@@H]2F" 5ZV SMILES CACTVS 3.385 "NC(=O)c1ccc[n](c1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2F" 5ZV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@@H]([C@@H](O4)[N]5=CC=CC(=C5)C(=O)N)F)O)O)O)N" 5ZV SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)[N]5=CC=CC(=C5)C(=O)N)F)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id 5ZV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{R},4~{S},5~{R})-5-(3-aminocarbonylpyridin-1-yl)-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5ZV "Create component" 2022-02-10 PDBJ 5ZV "Initial release" 2023-01-25 RCSB #