data_5ZY # _chem_comp.id 5ZY _chem_comp.name "[[(3~{a}~{S},5~{R},6~{R},6~{a}~{R})-2-azanylidene-3-[(4~{R})-4-azanyl-5-oxidanylidene-pentyl]-6-oxidanyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxazol-5-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H32 N8 O14 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-02-10 _chem_comp.pdbx_modified_date 2023-01-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 682.472 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5ZY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7WR6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5ZY C18 C1 C 0 1 N N N -13.269 -1.211 13.395 3.254 1.713 -1.809 C18 5ZY 1 5ZY C19 C2 C 0 1 N N R -13.345 -2.772 13.028 4.168 1.978 -0.610 C19 5ZY 2 5ZY C21 C3 C 0 1 N N R -12.099 -3.757 11.307 5.985 1.189 0.550 C21 5ZY 3 5ZY C23 C4 C 0 1 Y N N -10.291 -2.754 9.848 7.118 -0.904 -0.288 C23 5ZY 4 5ZY C25 C5 C 0 1 Y N N -11.137 -3.079 7.882 8.673 -1.190 1.196 C25 5ZY 5 5ZY C26 C6 C 0 1 Y N N -11.470 -3.178 6.536 9.744 -1.590 2.014 C26 5ZY 6 5ZY C29 C7 C 0 1 Y N N -13.453 -4.217 7.136 9.331 0.223 3.381 C29 5ZY 7 5ZY C31 C8 C 0 1 Y N N -12.024 -3.580 8.821 7.964 -0.031 1.551 C31 5ZY 8 5ZY C32 C9 C 0 1 N N R -11.292 -3.670 12.664 6.535 2.405 -0.227 C32 5ZY 9 5ZY O11 O1 O 0 1 N N N -14.452 2.648 15.846 -1.839 -1.124 -3.291 O11 5ZY 10 5ZY C34 C10 C 0 1 N N S -12.389 -3.470 13.669 5.312 2.936 -1.008 C34 5ZY 11 5ZY C37 C11 C 0 1 N N S -9.397 5.472 13.762 -6.043 -1.464 0.170 C37 5ZY 12 5ZY C39 C12 C 0 1 N N N -7.045 5.807 14.587 -6.691 0.619 1.638 C39 5ZY 13 5ZY O12 O2 O 0 1 N N N -12.862 1.039 16.896 -0.365 -2.999 -2.467 O12 5ZY 14 5ZY C40 C13 C 0 1 N N N -6.934 6.348 16.092 -7.765 1.397 0.875 C40 5ZY 15 5ZY O13 O3 O 0 1 N N N -12.788 1.470 14.353 -0.040 -0.530 -1.623 O13 5ZY 16 5ZY C41 C14 C 0 1 N N N -6.083 5.367 16.916 -7.686 2.878 1.250 C41 5ZY 17 5ZY C42 C15 C 0 1 N N R -4.671 5.906 17.274 -8.760 3.656 0.487 C42 5ZY 18 5ZY C44 C16 C 0 1 N N N -4.033 5.057 18.373 -8.604 5.129 0.762 C44 5ZY 19 5ZY C02 C17 C 0 1 N N N -8.517 7.614 13.522 -7.523 -1.759 1.908 C02 5ZY 20 5ZY C04 C18 C 0 1 N N R -10.545 6.506 13.524 -6.531 -2.933 0.289 C04 5ZY 21 5ZY C05 C19 C 0 1 N N R -11.185 6.662 14.908 -5.257 -3.775 0.144 C05 5ZY 22 5ZY C07 C20 C 0 1 N N R -10.966 5.492 15.554 -4.098 -2.773 0.256 C07 5ZY 23 5ZY C08 C21 C 0 1 N N N -12.275 4.638 15.572 -3.315 -2.738 -1.058 C08 5ZY 24 5ZY N01 N1 N 0 1 N N N -7.669 8.585 13.597 -8.552 -1.516 2.667 N01 5ZY 25 5ZY N22 N2 N 0 1 Y N N -11.484 -3.364 10.017 6.986 0.121 0.601 N22 5ZY 26 5ZY N24 N3 N 0 1 Y N N -10.083 -2.580 8.567 8.108 -1.672 0.063 N24 5ZY 27 5ZY N27 N4 N 0 1 N N N -10.584 -2.673 5.527 10.483 -2.720 1.711 N27 5ZY 28 5ZY N28 N5 N 0 1 Y N N -12.608 -3.741 6.198 10.031 -0.857 3.085 N28 5ZY 29 5ZY N30 N6 N 0 1 Y N N -13.170 -4.140 8.407 8.326 0.639 2.641 N30 5ZY 30 5ZY N38 N7 N 0 1 N N N -8.259 6.264 13.988 -6.767 -0.799 1.279 N38 5ZY 31 5ZY N43 N8 N 0 1 N N N -4.794 7.258 17.708 -10.090 3.214 0.927 N43 5ZY 32 5ZY O03 O4 O 0 1 N N N -9.834 7.704 12.983 -7.045 -2.995 1.627 O03 5ZY 33 5ZY O06 O5 O 0 1 N N N -10.577 7.686 15.583 -5.180 -4.741 1.194 O06 5ZY 34 5ZY O09 O6 O 0 1 N N N -11.943 3.346 16.065 -2.172 -1.894 -0.910 O09 5ZY 35 5ZY O15 O7 O 0 1 N N N -11.016 1.050 12.521 1.572 -0.267 -3.547 O15 5ZY 36 5ZY O16 O8 O 0 1 N N N -10.341 0.760 14.868 0.172 1.741 -2.930 O16 5ZY 37 5ZY O17 O9 O 0 1 N N N -11.946 -0.946 13.852 2.141 0.920 -1.393 O17 5ZY 38 5ZY O20 O10 O 0 1 N N N -13.091 -2.946 11.441 4.831 0.760 -0.205 O20 5ZY 39 5ZY O33 O11 O 0 1 N N N -10.591 -4.899 12.895 7.021 3.399 0.678 O33 5ZY 40 5ZY O35 O12 O 0 1 N N N -12.905 -4.711 14.052 5.006 4.274 -0.609 O35 5ZY 41 5ZY O36 O13 O 0 1 N N N -9.820 4.687 14.752 -4.651 -1.484 0.521 O36 5ZY 42 5ZY O45 O14 O 0 1 N N N -4.662 4.773 19.330 -9.507 5.748 1.271 O45 5ZY 43 5ZY P10 P1 P 0 1 N N N -13.038 2.102 15.837 -1.120 -1.626 -2.099 P10 5ZY 44 5ZY P14 P2 P 0 1 N N N -11.457 0.602 13.891 0.974 0.450 -2.399 P14 5ZY 45 5ZY H1 H1 H 0 1 N N N -13.488 -0.604 12.504 2.896 2.661 -2.209 H1 5ZY 46 5ZY H2 H2 H 0 1 N N N -13.995 -0.975 14.187 3.812 1.180 -2.580 H2 5ZY 47 5ZY H3 H3 H 0 1 N N N -14.356 -3.138 13.261 3.595 2.394 0.218 H3 5ZY 48 5ZY H4 H4 H 0 1 N N N -12.452 -4.794 11.213 5.692 1.483 1.558 H4 5ZY 49 5ZY H5 H5 H 0 1 N N N -9.619 -2.458 10.640 6.491 -1.059 -1.153 H5 5ZY 50 5ZY H6 H6 H 0 1 N N N -14.383 -4.671 6.828 9.599 0.791 4.260 H6 5ZY 51 5ZY H7 H7 H 0 1 N N N -10.614 -2.804 12.642 7.324 2.096 -0.912 H7 5ZY 52 5ZY H8 H8 H 0 1 N N N -11.995 -2.922 14.538 5.495 2.889 -2.081 H8 5ZY 53 5ZY H9 H9 H 0 1 N N N -9.270 4.896 12.834 -6.234 -1.010 -0.802 H9 5ZY 54 5ZY H10 H10 H 0 1 N N N -7.035 4.707 14.594 -5.707 1.008 1.378 H10 5ZY 55 5ZY H11 H11 H 0 1 N N N -6.190 6.178 14.003 -6.854 0.732 2.710 H11 5ZY 56 5ZY H12 H12 H 0 1 N N N -13.680 0.920 17.365 0.129 -3.386 -1.731 H12 5ZY 57 5ZY H13 H13 H 0 1 N N N -6.458 7.340 16.093 -7.602 1.284 -0.197 H13 5ZY 58 5ZY H14 H14 H 0 1 N N N -7.939 6.423 16.532 -8.750 1.008 1.136 H14 5ZY 59 5ZY H15 H15 H 0 1 N N N -6.617 5.147 17.852 -7.849 2.990 2.322 H15 5ZY 60 5ZY H16 H16 H 0 1 N N N -5.963 4.440 16.335 -6.702 3.267 0.989 H16 5ZY 61 5ZY H17 H17 H 0 1 N N N -4.040 5.852 16.375 -8.651 3.472 -0.582 H17 5ZY 62 5ZY H18 H18 H 0 1 N N N -3.012 4.719 18.274 -7.684 5.632 0.502 H18 5ZY 63 5ZY H19 H19 H 0 1 N N N -11.272 6.111 12.800 -7.280 -3.185 -0.462 H19 5ZY 64 5ZY H20 H20 H 0 1 N N N -12.261 6.854 14.781 -5.238 -4.268 -0.828 H20 5ZY 65 5ZY H21 H21 H 0 1 N N N -10.624 5.647 16.588 -3.436 -3.064 1.071 H21 5ZY 66 5ZY H22 H22 H 0 1 N N N -13.021 5.109 16.229 -2.991 -3.747 -1.314 H22 5ZY 67 5ZY H23 H23 H 0 1 N N N -12.683 4.557 14.554 -3.954 -2.350 -1.852 H23 5ZY 68 5ZY H24 H24 H 0 1 N N N -8.041 9.436 13.227 -9.036 -2.250 3.077 H24 5ZY 69 5ZY H25 H25 H 0 1 N N N -10.983 -2.829 4.624 10.265 -3.246 0.926 H25 5ZY 70 5ZY H26 H26 H 0 1 N N N -10.446 -1.692 5.665 11.220 -2.985 2.283 H26 5ZY 71 5ZY H27 H27 H 0 1 N N N -3.890 7.617 17.942 -10.244 2.244 0.695 H27 5ZY 72 5ZY H28 H28 H 0 1 N N N -5.192 7.809 16.974 -10.216 3.374 1.915 H28 5ZY 73 5ZY H30 H30 H 0 1 N N N -10.975 7.781 16.440 -4.394 -5.304 1.154 H30 5ZY 74 5ZY H31 H31 H 0 1 N N N -9.578 1.112 14.424 -0.247 2.260 -2.230 H31 5ZY 75 5ZY H32 H32 H 0 1 N N N -10.108 -4.840 13.711 7.378 4.186 0.243 H32 5ZY 76 5ZY H33 H33 H 0 1 N N N -13.599 -4.583 14.688 5.691 4.918 -0.834 H33 5ZY 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5ZY N27 C26 SING N N 1 5ZY N28 C26 DOUB Y N 2 5ZY N28 C29 SING Y N 3 5ZY C26 C25 SING Y N 4 5ZY C29 N30 DOUB Y N 5 5ZY C25 N24 SING Y N 6 5ZY C25 C31 DOUB Y N 7 5ZY N30 C31 SING Y N 8 5ZY N24 C23 DOUB Y N 9 5ZY C31 N22 SING Y N 10 5ZY C23 N22 SING Y N 11 5ZY N22 C21 SING N N 12 5ZY C21 O20 SING N N 13 5ZY C21 C32 SING N N 14 5ZY O20 C19 SING N N 15 5ZY O15 P14 DOUB N N 16 5ZY C32 O33 SING N N 17 5ZY C32 C34 SING N N 18 5ZY O03 C02 SING N N 19 5ZY O03 C04 SING N N 20 5ZY C19 C18 SING N N 21 5ZY C19 C34 SING N N 22 5ZY C18 O17 SING N N 23 5ZY C02 N01 DOUB N N 24 5ZY C02 N38 SING N N 25 5ZY C04 C37 SING N N 26 5ZY C04 C05 SING N N 27 5ZY C34 O35 SING N N 28 5ZY C37 N38 SING N N 29 5ZY C37 O36 SING N N 30 5ZY O17 P14 SING N N 31 5ZY P14 O13 SING N N 32 5ZY P14 O16 SING N N 33 5ZY N38 C39 SING N N 34 5ZY O13 P10 SING N N 35 5ZY C39 C40 SING N N 36 5ZY O36 C07 SING N N 37 5ZY C05 C07 SING N N 38 5ZY C05 O06 SING N N 39 5ZY C07 C08 SING N N 40 5ZY C08 O09 SING N N 41 5ZY P10 O11 DOUB N N 42 5ZY P10 O09 SING N N 43 5ZY P10 O12 SING N N 44 5ZY C40 C41 SING N N 45 5ZY C41 C42 SING N N 46 5ZY C42 N43 SING N N 47 5ZY C42 C44 SING N N 48 5ZY C44 O45 DOUB N N 49 5ZY C18 H1 SING N N 50 5ZY C18 H2 SING N N 51 5ZY C19 H3 SING N N 52 5ZY C21 H4 SING N N 53 5ZY C23 H5 SING N N 54 5ZY C29 H6 SING N N 55 5ZY C32 H7 SING N N 56 5ZY C34 H8 SING N N 57 5ZY C37 H9 SING N N 58 5ZY C39 H10 SING N N 59 5ZY C39 H11 SING N N 60 5ZY O12 H12 SING N N 61 5ZY C40 H13 SING N N 62 5ZY C40 H14 SING N N 63 5ZY C41 H15 SING N N 64 5ZY C41 H16 SING N N 65 5ZY C42 H17 SING N N 66 5ZY C44 H18 SING N N 67 5ZY C04 H19 SING N N 68 5ZY C05 H20 SING N N 69 5ZY C07 H21 SING N N 70 5ZY C08 H22 SING N N 71 5ZY C08 H23 SING N N 72 5ZY N01 H24 SING N N 73 5ZY N27 H25 SING N N 74 5ZY N27 H26 SING N N 75 5ZY N43 H27 SING N N 76 5ZY N43 H28 SING N N 77 5ZY O06 H30 SING N N 78 5ZY O16 H31 SING N N 79 5ZY O33 H32 SING N N 80 5ZY O35 H33 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5ZY InChI InChI 1.03 "InChI=1S/C21H32N8O14P2/c22-9(4-30)2-1-3-28-20-16(42-21(28)24)14(32)11(41-20)6-39-45(36,37)43-44(34,35)38-5-10-13(31)15(33)19(40-10)29-8-27-12-17(23)25-7-26-18(12)29/h4,7-11,13-16,19-20,24,31-33H,1-3,5-6,22H2,(H,34,35)(H,36,37)(H2,23,25,26)/b24-21-/t9-,10-,11-,13-,14-,15-,16-,19-,20+/m1/s1" 5ZY InChIKey InChI 1.03 ZUWDPDYSBKPILX-IHCGFKTISA-N 5ZY SMILES_CANONICAL CACTVS 3.385 "N[C@H](CCCN1[C@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2OC1=N)C=O" 5ZY SMILES CACTVS 3.385 "N[CH](CCCN1[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2OC1=N)C=O" 5ZY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\1/N([C@@H]2[C@H](O1)[C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)CCC[C@H](C=O)N" 5ZY SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C5C(O4)N(C(=N)O5)CCCC(C=O)N)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id 5ZY _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(3~{a}~{S},5~{R},6~{R},6~{a}~{R})-2-azanylidene-3-[(4~{R})-4-azanyl-5-oxidanylidene-pentyl]-6-oxidanyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxazol-5-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5ZY "Create component" 2022-02-10 PDBJ 5ZY "Initial release" 2023-01-25 RCSB #