data_60F
#
_chem_comp.id 60F
_chem_comp.name "(2~{R})-2-azanyl-3-[(~{E})-3-(4-hydroxyphenyl)prop-2-enoyl]sulfanyl-propanoic acid"
_chem_comp.type "L-peptide linking"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C12 H13 N O4 S"
_chem_comp.mon_nstd_parent_comp_id CYS
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-01-07
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 267.301
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 60F
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5HD3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
60F C1 C1 C 0 1 N N N N N N 12.115 2.916 -19.805 0.443 -0.355 -0.008 C1 60F 1
60F C2 C2 C 0 1 N N N N N N 13.030 1.973 -19.080 -0.962 0.045 0.053 C2 60F 2
60F C3 C3 C 0 1 N N N N N N 13.830 1.157 -19.727 -1.934 -0.868 -0.152 C3 60F 3
60F O1 O1 O 0 1 N N N N N N 12.333 3.143 -20.995 0.737 -1.512 -0.249 O1 60F 4
60F "C1'" "C1'" C 0 1 Y N N N N N 14.855 0.349 -19.011 -3.346 -0.466 -0.090 "C1'" 60F 5
60F "C6'" "C6'" C 0 1 Y N N N N N 15.163 0.469 -17.623 -4.356 -1.412 -0.302 "C6'" 60F 6
60F "C5'" "C5'" C 0 1 Y N N N N N 16.233 -0.223 -17.089 -5.677 -1.029 -0.242 "C5'" 60F 7
60F "C4'" "C4'" C 0 1 Y N N N N N 17.019 -1.055 -17.871 -6.009 0.293 0.027 "C4'" 60F 8
60F "O4'" "O4'" O 0 1 N N N N N N 17.987 -1.777 -17.265 -7.314 0.665 0.084 "O4'" 60F 9
60F "C3'" "C3'" C 0 1 Y N N N N N 16.742 -1.205 -19.199 -5.010 1.237 0.238 "C3'" 60F 10
60F "C2'" "C2'" C 0 1 Y N N N N N 15.718 -0.460 -19.807 -3.686 0.864 0.186 "C2'" 60F 11
60F N N N 0 1 N N N Y Y N 12.042 5.865 -21.383 4.466 1.708 -0.743 N 60F 12
60F CA CA C 0 1 N N R Y N N 11.021 6.138 -20.379 4.436 0.634 0.259 CA 60F 13
60F CB CB C 0 1 N N N N N N 10.191 4.896 -19.952 3.175 -0.210 0.064 CB 60F 14
60F SG SG S 0 1 N N N N N N 11.008 3.791 -18.811 1.712 0.838 0.259 SG 60F 15
60F C C C 0 1 N N N Y N Y 11.537 6.850 -19.133 5.654 -0.239 0.097 C 60F 16
60F O O O 0 1 N N N Y N Y 10.739 7.397 -18.347 6.265 -0.236 -0.946 O 60F 17
60F H1 H1 H 0 1 N N N N N N 13.031 1.965 -18.000 -1.222 1.073 0.262 H1 60F 18
60F H10 H2 H 0 1 N N N N N N 13.743 1.070 -20.800 -1.674 -1.896 -0.360 H2 60F 19
60F H3 H3 H 0 1 N N N N N N 14.559 1.101 -16.989 -4.099 -2.439 -0.512 H3 60F 20
60F H4 H4 H 0 1 N N N N N N 16.462 -0.113 -16.039 -6.457 -1.758 -0.406 H4 60F 21
60F H5 H5 H 0 1 N N N N N N 18.034 -1.537 -16.347 -7.705 0.594 0.965 H5 60F 22
60F H6 H6 H 0 1 N N N N N N 17.316 -1.904 -19.789 -5.273 2.263 0.447 H6 60F 23
60F H7 H7 H 0 1 N N N N N N 15.584 -0.500 -20.878 -2.911 1.597 0.351 H7 60F 24
60F H H8 H 0 1 N N N Y Y N 12.529 6.710 -21.602 5.256 2.318 -0.596 H8 60F 25
60F H2 H9 H 0 1 N Y N Y Y N 12.689 5.191 -21.026 4.471 1.329 -1.679 H9 60F 26
60F HA H11 H 0 1 N N N Y N N 10.301 6.828 -20.843 4.432 1.069 1.258 H11 60F 27
60F H12 H12 H 0 1 N N N N N N 9.265 5.252 -19.477 3.180 -0.646 -0.935 H12 60F 28
60F H13 H13 H 0 1 N N N N N N 9.941 4.325 -20.859 3.153 -1.007 0.808 H13 60F 29
60F OXT O2 O 0 1 N Y N Y N Y 12.848 6.846 -18.950 6.061 -1.019 1.110 O2 60F 30
60F HXT H10 H 0 1 N Y N Y N Y 13.058 7.313 -18.150 6.847 -1.561 0.959 H10 60F 31
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
60F N CA SING N N 1
60F O1 C1 DOUB N N 2
60F CA CB SING N N 3
60F CA C SING N N 4
60F CB SG SING N N 5
60F "C2'" "C3'" DOUB Y N 6
60F "C2'" "C1'" SING Y N 7
60F C1 C2 SING N N 8
60F C1 SG SING N N 9
60F C3 C2 DOUB N E 10
60F C3 "C1'" SING N N 11
60F "C3'" "C4'" SING Y N 12
60F C O DOUB N N 13
60F "C1'" "C6'" DOUB Y N 14
60F "C4'" "O4'" SING N N 15
60F "C4'" "C5'" DOUB Y N 16
60F "C6'" "C5'" SING Y N 17
60F C2 H1 SING N N 18
60F C3 H10 SING N N 19
60F "C6'" H3 SING N N 20
60F "C5'" H4 SING N N 21
60F "O4'" H5 SING N N 22
60F "C3'" H6 SING N N 23
60F "C2'" H7 SING N N 24
60F N H SING N N 25
60F N H2 SING N N 26
60F CA HA SING N N 27
60F CB H12 SING N N 28
60F CB H13 SING N N 29
60F C OXT SING N N 30
60F OXT HXT SING N N 31
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
60F InChI InChI 1.03 "InChI=1S/C12H13NO4S/c13-10(12(16)17)7-18-11(15)6-3-8-1-4-9(14)5-2-8/h1-6,10,14H,7,13H2,(H,16,17)/b6-3+/t10-/m0/s1"
60F InChIKey InChI 1.03 RIXZOZKLGOTDHO-YVGDHZEHSA-N
60F SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CSC(=O)/C=C/c1ccc(O)cc1)C(O)=O"
60F SMILES CACTVS 3.385 "N[CH](CSC(=O)C=Cc1ccc(O)cc1)C(O)=O"
60F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1cc(ccc1/C=C/C(=O)SC[C@@H](C(=O)O)N)O"
60F SMILES "OpenEye OEToolkits" 2.0.4 "c1cc(ccc1C=CC(=O)SCC(C(=O)O)N)O"
#
_pdbx_chem_comp_identifier.comp_id 60F
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.4
_pdbx_chem_comp_identifier.identifier "(2~{R})-2-azanyl-3-[(~{E})-3-(4-hydroxyphenyl)prop-2-enoyl]sulfanyl-propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
60F "Create component" 2016-01-07 RCSB
60F "Initial release" 2016-05-18 RCSB
60F "Modify backbone" 2023-11-03 PDBE
60F "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 60F
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category Chromophore/chromophore-like
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0414
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#