data_60S
#
_chem_comp.id 60S
_chem_comp.name "5-{(2E,4aR,7aR)-6-[5-fluoro-4-methyl-6-(methylamino)pyrimidin-2-yl]-2-imino-3-methyl-4-oxooctahydro-7aH-pyrrolo[3,4-d]pyrimidin-7a-yl}thiophene-2-carbonitrile"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H19 F N8 O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-01-12
_chem_comp.pdbx_modified_date 2016-03-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 414.460
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 60S
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5HE5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
60S C1 C1 C 0 1 N N R 21.433 10.644 21.666 1.122 0.483 0.618 C1 60S 1
60S C2 C2 C 0 1 N N R 20.981 12.011 22.186 0.775 1.149 -0.730 C2 60S 2
60S C4 C3 C 0 1 N N N 22.338 10.247 23.938 2.729 2.264 1.064 C4 60S 3
60S C5 C4 C 0 1 N N N 21.823 12.541 23.311 1.785 2.186 -1.105 C5 60S 4
60S C7 C5 C 0 1 Y N N 17.767 10.364 21.839 -2.441 0.630 0.400 C7 60S 5
60S C10 C6 C 0 1 Y N N 15.664 10.602 22.740 -3.844 -1.192 0.249 C10 60S 6
60S C11 C7 C 0 1 Y N N 22.556 10.763 20.705 2.054 -0.690 0.453 C11 60S 7
60S N12 N1 N 0 1 Y N N 17.366 9.508 20.886 -3.392 1.454 -0.012 N12 60S 8
60S C14 C8 C 0 1 Y N N 15.182 9.734 21.787 -4.871 -0.347 -0.183 C14 60S 9
60S C15 C9 C 0 1 N N N 19.576 11.816 22.700 -0.594 1.804 -0.477 C15 60S 10
60S C18 C10 C 0 1 Y N N 22.631 11.332 19.442 2.941 -1.088 1.370 C18 60S 11
60S C19 C11 C 0 1 Y N N 24.858 10.723 19.740 3.384 -2.676 -0.220 C19 60S 12
60S C24 C12 C 0 1 Y N N 23.940 11.300 18.886 3.691 -2.187 1.019 C24 60S 13
60S N3 N2 N 0 1 N N N 22.485 11.606 24.071 2.672 2.707 -0.247 N3 60S 14
60S N6 N3 N 0 1 N N N 21.730 9.789 22.807 1.672 1.502 1.525 N6 60S 15
60S N8 N4 N 0 1 Y N N 16.965 10.901 22.771 -2.654 -0.671 0.527 N8 60S 16
60S N9 N5 N 0 1 N N N 19.138 10.695 21.886 -1.188 1.141 0.698 N9 60S 17
60S C13 C13 C 0 1 N N N 20.153 10.143 21.025 -0.273 0.071 1.148 C13 60S 18
60S S16 S1 S 0 1 Y N N 24.106 10.182 21.180 2.110 -1.692 -0.927 S16 60S 19
60S C17 C14 C 0 1 Y N N 16.066 9.188 20.887 -4.603 1.003 -0.307 C17 60S 20
60S N20 N6 N 0 1 N N N 14.753 11.128 23.664 -4.065 -2.555 0.384 N20 60S 21
60S N21 N7 N 0 1 N N N 27.400 10.470 19.491 4.491 -4.707 -1.336 N21 60S 22
60S N22 N8 N 0 1 N N N 22.773 9.453 24.859 3.739 2.556 1.833 N22 60S 23
60S C23 C15 C 0 1 N N N 26.247 10.563 19.553 4.002 -3.808 -0.842 C23 60S 24
60S O25 O1 O 0 1 N N N 21.848 13.739 23.558 1.803 2.578 -2.252 O25 60S 25
60S F26 F1 F 0 1 N N N 13.883 9.403 21.798 -6.094 -0.839 -0.477 F26 60S 26
60S C27 C16 C 0 1 N N N 23.344 12.110 25.128 3.590 3.756 -0.699 C27 60S 27
60S C28 C17 C 0 1 N N N 15.618 8.224 19.823 -5.677 1.953 -0.774 C28 60S 28
60S C29 C18 C 0 1 N N N 15.209 12.378 24.275 -2.982 -3.431 0.837 C29 60S 29
60S H1 H1 H 0 1 N N N 20.974 12.732 21.356 0.693 0.395 -1.513 H1 60S 30
60S H2 H2 H 0 1 N N N 18.955 12.708 22.528 -0.465 2.868 -0.276 H2 60S 31
60S H3 H3 H 0 1 N N N 19.569 11.565 23.771 -1.237 1.667 -1.346 H3 60S 32
60S H4 H4 H 0 1 N N N 21.780 11.757 18.931 3.062 -0.583 2.317 H4 60S 33
60S H5 H5 H 0 1 N N N 24.187 11.684 17.907 4.446 -2.620 1.658 H5 60S 34
60S H6 H6 H 0 1 N N N 20.050 10.519 19.996 -0.572 -0.886 0.721 H6 60S 35
60S H7 H7 H 0 1 N N N 20.115 9.044 21.019 -0.264 0.014 2.236 H7 60S 36
60S H8 H8 H 0 1 N N N 13.888 11.301 23.194 -4.936 -2.928 0.178 H8 60S 37
60S H9 H9 H 0 1 N N N 23.196 9.952 25.615 4.470 3.093 1.491 H9 60S 38
60S H11 H11 H 0 1 N N N 23.811 11.265 25.656 4.234 4.056 0.127 H11 60S 39
60S H12 H12 H 0 1 N N N 24.127 12.747 24.691 4.202 3.375 -1.516 H12 60S 40
60S H13 H13 H 0 1 N N N 22.745 12.700 25.837 3.017 4.616 -1.045 H13 60S 41
60S H14 H14 H 0 1 N N N 16.479 7.938 19.201 -5.643 2.034 -1.860 H14 60S 42
60S H15 H15 H 0 1 N N N 15.193 7.327 20.297 -6.653 1.576 -0.468 H15 60S 43
60S H16 H16 H 0 1 N N N 14.854 8.703 19.193 -5.511 2.935 -0.330 H16 60S 44
60S H17 H17 H 0 1 N N N 14.451 12.736 24.987 -3.340 -4.459 0.882 H17 60S 45
60S H18 H18 H 0 1 N N N 16.157 12.202 24.805 -2.147 -3.367 0.139 H18 60S 46
60S H19 H19 H 0 1 N N N 15.362 13.135 23.491 -2.652 -3.118 1.828 H19 60S 47
60S H20 H20 H 0 1 N N N 21.477 8.823 22.759 1.306 1.634 2.413 H20 60S 48
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
60S C24 C18 SING Y N 1
60S C24 C19 DOUB Y N 2
60S C18 C11 DOUB Y N 3
60S N21 C23 TRIP N N 4
60S C23 C19 SING N N 5
60S C19 S16 SING Y N 6
60S C28 C17 SING N N 7
60S C11 S16 SING Y N 8
60S C11 C1 SING N N 9
60S N12 C17 DOUB Y N 10
60S N12 C7 SING Y N 11
60S C17 C14 SING Y N 12
60S C13 C1 SING N N 13
60S C13 N9 SING N N 14
60S C1 C2 SING N N 15
60S C1 N6 SING N N 16
60S C14 F26 SING N N 17
60S C14 C10 DOUB Y N 18
60S C7 N9 SING N N 19
60S C7 N8 DOUB Y N 20
60S N9 C15 SING N N 21
60S C2 C15 SING N N 22
60S C2 C5 SING N N 23
60S C10 N8 SING Y N 24
60S C10 N20 SING N N 25
60S N6 C4 SING N N 26
60S C5 O25 DOUB N N 27
60S C5 N3 SING N N 28
60S N20 C29 SING N N 29
60S C4 N3 SING N N 30
60S C4 N22 DOUB N N 31
60S N3 C27 SING N N 32
60S C2 H1 SING N N 33
60S C15 H2 SING N N 34
60S C15 H3 SING N N 35
60S C18 H4 SING N N 36
60S C24 H5 SING N N 37
60S C13 H6 SING N N 38
60S C13 H7 SING N N 39
60S N20 H8 SING N N 40
60S N22 H9 SING N N 41
60S C27 H11 SING N N 42
60S C27 H12 SING N N 43
60S C27 H13 SING N N 44
60S C28 H14 SING N N 45
60S C28 H15 SING N N 46
60S C28 H16 SING N N 47
60S C29 H17 SING N N 48
60S C29 H18 SING N N 49
60S C29 H19 SING N N 50
60S N6 H20 SING N N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
60S SMILES ACDLabs 12.01 "C32(C(CN(c1nc(NC)c(F)c(n1)C)C2)C(=O)N(\C(=N)N3)C)c4sc(cc4)C#N"
60S InChI InChI 1.03 "InChI=1S/C18H19FN8OS/c1-9-13(19)14(22-2)24-17(23-9)27-7-11-15(28)26(3)16(21)25-18(11,8-27)12-5-4-10(6-20)29-12/h4-5,11H,7-8H2,1-3H3,(H2,21,25)(H,22,23,24)/t11-,18-/m0/s1"
60S InChIKey InChI 1.03 ZGUINBOSNMEMBB-VOJFVSQTSA-N
60S SMILES_CANONICAL CACTVS 3.385 "CNc1nc(nc(C)c1F)N2C[C@H]3C(=O)N(C)C(=N)N[C@]3(C2)c4sc(cc4)C#N"
60S SMILES CACTVS 3.385 "CNc1nc(nc(C)c1F)N2C[CH]3C(=O)N(C)C(=N)N[C]3(C2)c4sc(cc4)C#N"
60S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "[H]/N=C/1\N[C@]2(CN(C[C@H]2C(=O)N1C)c3nc(c(c(n3)NC)F)C)c4ccc(s4)C#N"
60S SMILES "OpenEye OEToolkits" 2.0.4 "Cc1c(c(nc(n1)N2CC3C(=O)N(C(=N)NC3(C2)c4ccc(s4)C#N)C)NC)F"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
60S "SYSTEMATIC NAME" ACDLabs 12.01 "5-{(2E,4aR,7aR)-6-[5-fluoro-4-methyl-6-(methylamino)pyrimidin-2-yl]-2-imino-3-methyl-4-oxooctahydro-7aH-pyrrolo[3,4-d]pyrimidin-7a-yl}thiophene-2-carbonitrile"
60S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "5-[(4~{a}~{R},7~{a}~{R})-2-azanylidene-6-[5-fluoranyl-4-methyl-6-(methylamino)pyrimidin-2-yl]-3-methyl-4-oxidanylidene-1,4~{a},5,7-tetrahydropyrrolo[3,4-d]pyrimidin-7~{a}-yl]thiophene-2-carbonitrile"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
60S "Create component" 2016-01-12 RCSB
60S "Initial release" 2016-03-16 RCSB
#