data_60W
#
_chem_comp.id 60W
_chem_comp.name "3-{5-[(2E,4aR,7aR)-6-(5-fluoro-4-methoxypyrimidin-2-yl)-2-imino-3-methyl-4-oxooctahydro-7aH-pyrrolo[3,4-d]pyrimidin-7a-yl]thiophen-3-yl}benzonitrile"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H20 F N7 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-01-12
_chem_comp.pdbx_modified_date 2016-03-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 477.514
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 60W
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5HDU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
60W C1 C1 C 0 1 Y N N 25.318 10.994 19.984 -3.140 0.541 -0.270 C1 60W 1
60W C2 C2 C 0 1 Y N N 24.383 10.521 21.005 -2.090 -0.050 0.430 C2 60W 2
60W C3 C3 C 0 1 Y N N 23.090 10.731 20.641 -0.943 -0.130 -0.241 C3 60W 3
60W C4 C4 C 0 1 N N R 21.861 10.383 21.448 0.333 -0.725 0.295 C4 60W 4
60W C5 C5 C 0 1 N N N 22.518 10.045 23.801 -0.420 -2.960 0.922 C5 60W 5
60W C6 C6 C 0 1 N N N 23.027 11.981 25.252 -0.169 -4.916 -0.555 C6 60W 6
60W C8 C7 C 0 1 N N R 21.102 11.645 21.966 1.203 -1.344 -0.821 C8 60W 7
60W C11 C8 C 0 1 Y N N 18.367 9.580 20.825 3.581 0.741 0.554 C11 60W 8
60W C12 C9 C 0 1 Y N N 17.289 8.334 19.260 5.790 1.304 0.214 C12 60W 9
60W C13 C10 C 0 1 N N N 18.547 7.429 17.464 7.395 -0.445 0.265 C13 60W 10
60W C14 C11 C 0 1 Y N N 16.073 8.607 19.866 5.412 2.641 0.074 C14 60W 11
60W C15 C12 C 0 1 Y N N 16.111 9.426 20.994 4.072 2.963 0.194 C15 60W 12
60W C16 C13 C 0 1 Y N N 26.797 11.014 20.166 -4.493 0.718 0.312 C16 60W 13
60W C17 C14 C 0 1 Y N N 27.362 10.403 21.283 -5.501 1.316 -0.438 C17 60W 14
60W C20 C15 C 0 1 Y N N 28.982 11.848 19.540 -6.018 0.444 2.153 C20 60W 15
60W C21 C16 C 0 1 Y N N 27.622 11.731 19.289 -4.759 0.280 1.609 C21 60W 16
60W C22 C17 C 0 1 N N N 29.281 9.954 22.733 -7.814 2.093 -0.650 C22 60W 17
60W N6 N1 N 0 1 N N N 29.693 9.472 23.680 -8.641 2.580 -1.256 N6 60W 18
60W C18 C18 C 0 1 Y N N 28.725 10.535 21.540 -6.770 1.479 0.116 C18 60W 19
60W C19 C19 C 0 1 Y N N 29.539 11.259 20.664 -7.022 1.042 1.418 C19 60W 20
60W C C20 C 0 1 Y N N 24.644 11.519 18.899 -2.824 0.942 -1.515 C 60W 21
60W S S1 S 0 1 Y N N 22.951 11.489 19.095 -1.140 0.561 -1.846 S 60W 22
60W C10 C21 C 0 1 N N N 20.763 9.773 20.560 1.278 0.349 0.887 C10 60W 23
60W N3 N2 N 0 1 N N N 19.551 9.996 21.346 2.631 -0.237 0.801 N3 60W 24
60W C9 C22 C 0 1 N N N 19.690 11.118 22.277 2.635 -1.258 -0.262 C9 60W 25
60W C7 C23 C 0 1 N N N 21.746 12.253 23.197 0.831 -2.769 -1.078 C7 60W 26
60W O O1 O 0 1 N N N 21.578 13.428 23.473 1.222 -3.285 -2.104 O 60W 27
60W N2 N3 N 0 1 N N N 22.468 11.408 24.018 0.091 -3.509 -0.242 N2 60W 28
60W N1 N4 N 0 1 N N N 22.899 9.296 24.778 -1.347 -3.567 1.606 N1 60W 29
60W N N5 N 0 1 N N N 22.149 9.529 22.621 0.079 -1.746 1.321 N 60W 30
60W N5 N6 N 0 1 Y N N 17.256 9.921 21.488 3.193 2.001 0.431 N5 60W 31
60W F F1 F 0 1 N N N 14.932 8.105 19.351 6.334 3.598 -0.167 F 60W 32
60W N4 N7 N 0 1 Y N N 18.430 8.808 19.726 4.855 0.392 0.451 N4 60W 33
60W O1 O2 O 0 1 N N N 17.297 7.576 18.150 7.092 0.943 0.109 O1 60W 34
60W H1 H1 H 0 1 N N N 24.683 10.061 21.935 -2.198 -0.415 1.441 H1 60W 35
60W H2 H2 H 0 1 N N N 23.573 11.202 25.804 -0.775 -5.359 0.235 H2 60W 36
60W H3 H3 H 0 1 N N N 23.716 12.800 24.997 -0.703 -4.984 -1.503 H3 60W 37
60W H4 H4 H 0 1 N N N 22.211 12.370 25.878 0.777 -5.453 -0.631 H4 60W 38
60W H5 H5 H 0 1 N N N 21.048 12.394 21.162 1.119 -0.755 -1.734 H5 60W 39
60W H6 H6 H 0 1 N N N 18.408 6.788 16.581 8.469 -0.597 0.158 H6 60W 40
60W H7 H7 H 0 1 N N N 18.909 8.418 17.146 7.077 -0.778 1.253 H7 60W 41
60W H8 H8 H 0 1 N N N 19.283 6.968 18.139 6.869 -1.019 -0.498 H8 60W 42
60W H9 H9 H 0 1 N N N 15.183 9.671 21.489 3.746 3.988 0.091 H9 60W 43
60W H10 H10 H 0 1 N N N 26.742 9.825 21.952 -5.301 1.653 -1.444 H10 60W 44
60W H11 H11 H 0 1 N N N 29.609 12.401 18.856 -6.216 0.107 3.160 H11 60W 45
60W H12 H12 H 0 1 N N N 27.197 12.196 18.412 -3.978 -0.188 2.190 H12 60W 46
60W H13 H13 H 0 1 N N N 30.596 11.359 20.862 -8.004 1.167 1.849 H13 60W 47
60W H14 H14 H 0 1 N N N 25.137 11.907 18.020 -3.502 1.420 -2.206 H14 60W 48
60W H15 H15 H 0 1 N N N 20.937 8.699 20.396 1.224 1.266 0.299 H15 60W 49
60W H16 H16 H 0 1 N N N 20.706 10.288 19.590 1.018 0.550 1.926 H16 60W 50
60W H17 H17 H 0 1 N N N 18.928 11.888 22.086 2.930 -2.223 0.151 H17 60W 51
60W H18 H18 H 0 1 N N N 19.615 10.779 23.321 3.324 -0.966 -1.054 H18 60W 52
60W H19 H19 H 0 1 N N N 23.116 9.829 25.596 -1.692 -4.421 1.303 H19 60W 53
60W H20 H20 H 0 1 N N N 22.066 8.537 22.530 0.260 -1.572 2.258 H20 60W 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
60W C13 O1 SING N N 1
60W O1 C12 SING N N 2
60W C S SING Y N 3
60W C C1 DOUB Y N 4
60W S C3 SING Y N 5
60W C12 N4 DOUB Y N 6
60W C12 C14 SING Y N 7
60W C21 C20 DOUB Y N 8
60W C21 C16 SING Y N 9
60W F C14 SING N N 10
60W C20 C19 SING Y N 11
60W N4 C11 SING Y N 12
60W C14 C15 DOUB Y N 13
60W C1 C16 SING N N 14
60W C1 C2 SING Y N 15
60W C16 C17 DOUB Y N 16
60W C10 N3 SING N N 17
60W C10 C4 SING N N 18
60W C3 C2 DOUB Y N 19
60W C3 C4 SING N N 20
60W C19 C18 DOUB Y N 21
60W C11 N3 SING N N 22
60W C11 N5 DOUB Y N 23
60W C15 N5 SING Y N 24
60W C17 C18 SING Y N 25
60W N3 C9 SING N N 26
60W C4 C8 SING N N 27
60W C4 N SING N N 28
60W C18 C22 SING N N 29
60W C8 C9 SING N N 30
60W C8 C7 SING N N 31
60W N C5 SING N N 32
60W C22 N6 TRIP N N 33
60W C7 O DOUB N N 34
60W C7 N2 SING N N 35
60W C5 N2 SING N N 36
60W C5 N1 DOUB N N 37
60W N2 C6 SING N N 38
60W C2 H1 SING N N 39
60W C6 H2 SING N N 40
60W C6 H3 SING N N 41
60W C6 H4 SING N N 42
60W C8 H5 SING N N 43
60W C13 H6 SING N N 44
60W C13 H7 SING N N 45
60W C13 H8 SING N N 46
60W C15 H9 SING N N 47
60W C17 H10 SING N N 48
60W C20 H11 SING N N 49
60W C21 H12 SING N N 50
60W C19 H13 SING N N 51
60W C H14 SING N N 52
60W C10 H15 SING N N 53
60W C10 H16 SING N N 54
60W C9 H17 SING N N 55
60W C9 H18 SING N N 56
60W N1 H19 SING N N 57
60W N H20 SING N N 58
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
60W SMILES ACDLabs 12.01 "c5(c1cc(C#N)ccc1)cc(C43C(CN(c2ncc(c(n2)OC)F)C3)C(=O)N(\C(=N)N4)C)sc5"
60W InChI InChI 1.03 "InChI=1S/C23H20FN7O2S/c1-30-20(32)16-10-31(22-27-9-17(24)19(28-22)33-2)12-23(16,29-21(30)26)18-7-15(11-34-18)14-5-3-4-13(6-14)8-25/h3-7,9,11,16H,10,12H2,1-2H3,(H2,26,29)/t16-,23-/m0/s1"
60W InChIKey InChI 1.03 UKGROMSNWKWCLS-HJPURHCSSA-N
60W SMILES_CANONICAL CACTVS 3.385 "COc1nc(ncc1F)N2C[C@H]3C(=O)N(C)C(=N)N[C@]3(C2)c4scc(c4)c5cccc(c5)C#N"
60W SMILES CACTVS 3.385 "COc1nc(ncc1F)N2C[CH]3C(=O)N(C)C(=N)N[C]3(C2)c4scc(c4)c5cccc(c5)C#N"
60W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "[H]/N=C/1\N[C@]2(CN(C[C@H]2C(=O)N1C)c3ncc(c(n3)OC)F)c4cc(cs4)c5cccc(c5)C#N"
60W SMILES "OpenEye OEToolkits" 2.0.4 "CN1C(=O)C2CN(CC2(NC1=N)c3cc(cs3)c4cccc(c4)C#N)c5ncc(c(n5)OC)F"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
60W "SYSTEMATIC NAME" ACDLabs 12.01 "3-{5-[(2E,4aR,7aR)-6-(5-fluoro-4-methoxypyrimidin-2-yl)-2-imino-3-methyl-4-oxooctahydro-7aH-pyrrolo[3,4-d]pyrimidin-7a-yl]thiophen-3-yl}benzonitrile"
60W "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "3-[5-[(4~{a}~{R},7~{a}~{R})-2-azanylidene-6-(5-fluoranyl-4-methoxy-pyrimidin-2-yl)-3-methyl-4-oxidanylidene-1,4~{a},5,7-tetrahydropyrrolo[3,4-d]pyrimidin-7~{a}-yl]thiophen-3-yl]benzenecarbonitrile"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
60W "Create component" 2016-01-12 RCSB
60W "Initial release" 2016-03-16 RCSB
#