data_60Y
#
_chem_comp.id 60Y
_chem_comp.name "3-{5-[(2E,4aR,7aR)-6-(5-fluoropyrimidin-2-yl)-2-imino-3-methyl-4-oxooctahydro-7aH-pyrrolo[3,4-d]pyrimidin-7a-yl]thiophen-3-yl}benzonitrile"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H18 F N7 O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-01-12
_chem_comp.pdbx_modified_date 2016-03-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 447.488
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 60Y
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5HD0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
60Y C20 C1 C 0 1 Y N N 27.271 11.335 18.721 -4.247 -0.381 -1.629 C20 60Y 1
60Y C13 C2 C 0 1 Y N N 15.373 9.818 21.365 5.812 -2.779 -0.091 C13 60Y 2
60Y C11 C3 C 0 1 Y N N 17.900 10.496 21.435 4.027 -0.845 -0.585 C11 60Y 3
60Y C17 C4 C 0 1 Y N N 28.432 10.530 21.113 -6.287 -1.449 -0.076 C17 60Y 4
60Y C10 C5 C 0 1 N N N 20.267 10.157 20.722 1.732 -0.393 -0.900 C10 60Y 5
60Y C12 C6 C 0 1 Y N N 16.266 9.191 20.536 4.459 -3.070 -0.184 C12 60Y 6
60Y C18 C7 C 0 1 Y N N 29.237 10.980 20.064 -6.517 -1.115 -1.413 C18 60Y 7
60Y C15 C8 C 0 1 Y N N 26.458 10.893 19.772 -4.005 -0.710 -0.296 C15 60Y 8
60Y C14 C9 C 0 1 Y N N 15.775 10.805 22.205 6.219 -1.462 -0.255 C14 60Y 9
60Y C16 C10 C 0 1 Y N N 27.049 10.480 20.962 -5.025 -1.245 0.483 C16 60Y 10
60Y C19 C11 C 0 1 Y N N 28.651 11.372 18.869 -5.498 -0.585 -2.178 C19 60Y 11
60Y N6 N1 N 0 1 N N N 29.462 9.760 23.345 -8.182 -2.436 1.349 N6 60Y 12
60Y C21 C12 C 0 1 N N N 29.024 10.109 22.354 -7.344 -2.000 0.719 C21 60Y 13
60Y C1 C13 C 0 1 Y N N 24.973 10.948 19.681 -2.660 -0.490 0.291 C1 60Y 14
60Y C C14 C 0 1 Y N N 24.266 11.314 18.559 -2.364 -0.793 1.569 C 60Y 15
60Y C2 C15 C 0 1 Y N N 24.080 10.665 20.799 -1.597 0.042 -0.437 C2 60Y 16
60Y C3 C16 C 0 1 Y N N 22.776 10.837 20.462 -0.461 0.172 0.244 C3 60Y 17
60Y S S1 S 0 1 Y N N 22.576 11.324 18.825 -0.683 -0.393 1.894 S 60Y 18
60Y C4 C17 C 0 1 N N R 21.565 10.689 21.350 0.826 0.719 -0.317 C4 60Y 19
60Y N3 N2 N 0 1 N N N 19.221 10.808 21.520 3.103 0.155 -0.840 N3 60Y 20
60Y N5 N3 N 0 1 Y N N 17.065 11.160 22.267 5.311 -0.532 -0.498 N5 60Y 21
60Y F F1 F 0 1 N N N 14.082 9.397 21.405 6.713 -3.754 0.159 F 60Y 22
60Y N4 N4 N 0 1 Y N N 17.562 9.534 20.556 3.604 -2.091 -0.429 N4 60Y 23
60Y C9 C18 C 0 1 N N N 19.716 11.894 22.363 3.148 1.195 0.204 C9 60Y 24
60Y C8 C19 C 0 1 N N R 21.141 12.105 21.862 1.726 1.333 0.776 C8 60Y 25
60Y C7 C20 C 0 1 N N N 22.009 12.616 22.995 1.399 2.773 1.011 C7 60Y 26
60Y O O1 O 0 1 N N N 22.269 13.802 23.094 1.816 3.296 2.022 O 60Y 27
60Y N2 N5 N 0 1 N N N 22.532 11.675 23.864 0.671 3.519 0.169 N2 60Y 28
60Y C6 C21 C 0 1 N N N 23.224 12.167 25.068 0.447 4.936 0.464 C6 60Y 29
60Y C5 C22 C 0 1 N N N 22.410 10.317 23.639 0.130 2.963 -0.978 C5 60Y 30
60Y N1 N6 N 0 1 N N N 22.784 9.508 24.550 -0.787 3.584 -1.663 N1 60Y 31
60Y N N7 N 0 1 N N N 21.838 9.837 22.523 0.589 1.715 -1.372 N 60Y 32
60Y H1 H1 H 0 1 N N N 26.822 11.649 17.790 -3.456 0.039 -2.233 H1 60Y 33
60Y H2 H2 H 0 1 N N N 20.193 10.446 19.663 1.659 -1.296 -0.294 H2 60Y 34
60Y H3 H3 H 0 1 N N N 20.206 9.062 20.809 1.454 -0.605 -1.932 H3 60Y 35
60Y H4 H4 H 0 1 N N N 15.925 8.418 19.864 4.108 -4.084 -0.058 H4 60Y 36
60Y H5 H5 H 0 1 N N N 30.310 11.023 20.182 -7.493 -1.272 -1.847 H5 60Y 37
60Y H6 H6 H 0 1 N N N 15.050 11.308 22.828 7.265 -1.200 -0.184 H6 60Y 38
60Y H7 H7 H 0 1 N N N 26.432 10.119 21.772 -4.842 -1.501 1.516 H7 60Y 39
60Y H8 H8 H 0 1 N N N 29.271 11.707 18.051 -5.680 -0.328 -3.212 H8 60Y 40
60Y H9 H9 H 0 1 N N N 24.727 11.567 17.615 -3.054 -1.216 2.284 H9 60Y 41
60Y H10 H10 H 0 1 N N N 24.416 10.356 21.778 -1.688 0.326 -1.474 H10 60Y 42
60Y H11 H11 H 0 1 N N N 19.112 12.804 22.229 3.838 0.898 0.993 H11 60Y 43
60Y H12 H12 H 0 1 N N N 19.710 11.603 23.424 3.468 2.142 -0.231 H12 60Y 44
60Y H13 H13 H 0 1 N N N 21.147 12.818 21.025 1.636 0.764 1.702 H13 60Y 45
60Y H14 H14 H 0 1 N N N 23.584 11.312 25.660 1.243 5.531 0.017 H14 60Y 46
60Y H15 H15 H 0 1 N N N 24.078 12.792 24.770 -0.513 5.246 0.051 H15 60Y 47
60Y H16 H16 H 0 1 N N N 22.526 12.764 25.674 0.444 5.087 1.543 H16 60Y 48
60Y H17 H17 H 0 1 N N N 23.137 9.986 25.354 -1.103 4.453 -1.373 H17 60Y 49
60Y H18 H18 H 0 1 N N N 21.589 8.869 22.486 0.759 1.510 -2.305 H18 60Y 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
60Y C S SING Y N 1
60Y C C1 DOUB Y N 2
60Y C20 C19 DOUB Y N 3
60Y C20 C15 SING Y N 4
60Y S C3 SING Y N 5
60Y C19 C18 SING Y N 6
60Y C1 C15 SING N N 7
60Y C1 C2 SING Y N 8
60Y C15 C16 DOUB Y N 9
60Y C18 C17 DOUB Y N 10
60Y C3 C2 DOUB Y N 11
60Y C3 C4 SING N N 12
60Y C12 N4 DOUB Y N 13
60Y C12 C13 SING Y N 14
60Y N4 C11 SING Y N 15
60Y C10 C4 SING N N 16
60Y C10 N3 SING N N 17
60Y C16 C17 SING Y N 18
60Y C17 C21 SING N N 19
60Y C4 C8 SING N N 20
60Y C4 N SING N N 21
60Y C13 F SING N N 22
60Y C13 C14 DOUB Y N 23
60Y C11 N3 SING N N 24
60Y C11 N5 DOUB Y N 25
60Y N3 C9 SING N N 26
60Y C8 C9 SING N N 27
60Y C8 C7 SING N N 28
60Y C14 N5 SING Y N 29
60Y C21 N6 TRIP N N 30
60Y N C5 SING N N 31
60Y C7 O DOUB N N 32
60Y C7 N2 SING N N 33
60Y C5 N2 SING N N 34
60Y C5 N1 DOUB N N 35
60Y N2 C6 SING N N 36
60Y C20 H1 SING N N 37
60Y C10 H2 SING N N 38
60Y C10 H3 SING N N 39
60Y C12 H4 SING N N 40
60Y C18 H5 SING N N 41
60Y C14 H6 SING N N 42
60Y C16 H7 SING N N 43
60Y C19 H8 SING N N 44
60Y C H9 SING N N 45
60Y C2 H10 SING N N 46
60Y C9 H11 SING N N 47
60Y C9 H12 SING N N 48
60Y C8 H13 SING N N 49
60Y C6 H14 SING N N 50
60Y C6 H15 SING N N 51
60Y C6 H16 SING N N 52
60Y N1 H17 SING N N 53
60Y N H18 SING N N 54
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
60Y SMILES ACDLabs 12.01 "c1ccc(C#N)cc1c5cc(C34CN(c2ncc(F)cn2)CC3C(=O)N(C)\C(=N)N4)sc5"
60Y InChI InChI 1.03 "InChI=1S/C22H18FN7OS/c1-29-19(31)17-10-30(21-26-8-16(23)9-27-21)12-22(17,28-20(29)25)18-6-15(11-32-18)14-4-2-3-13(5-14)7-24/h2-6,8-9,11,17H,10,12H2,1H3,(H2,25,28)/t17-,22-/m0/s1"
60Y InChIKey InChI 1.03 PTLJUNIICOHEHE-JTSKRJEESA-N
60Y SMILES_CANONICAL CACTVS 3.385 "CN1C(=N)N[C@]2(CN(C[C@H]2C1=O)c3ncc(F)cn3)c4scc(c4)c5cccc(c5)C#N"
60Y SMILES CACTVS 3.385 "CN1C(=N)N[C]2(CN(C[CH]2C1=O)c3ncc(F)cn3)c4scc(c4)c5cccc(c5)C#N"
60Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "[H]/N=C/1\N[C@]2(CN(C[C@H]2C(=O)N1C)c3ncc(cn3)F)c4cc(cs4)c5cccc(c5)C#N"
60Y SMILES "OpenEye OEToolkits" 2.0.4 "CN1C(=O)C2CN(CC2(NC1=N)c3cc(cs3)c4cccc(c4)C#N)c5ncc(cn5)F"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
60Y "SYSTEMATIC NAME" ACDLabs 12.01 "3-{5-[(2E,4aR,7aR)-6-(5-fluoropyrimidin-2-yl)-2-imino-3-methyl-4-oxooctahydro-7aH-pyrrolo[3,4-d]pyrimidin-7a-yl]thiophen-3-yl}benzonitrile"
60Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "3-[5-[(4~{a}~{R},7~{a}~{R})-2-azanylidene-6-(5-fluoranylpyrimidin-2-yl)-3-methyl-4-oxidanylidene-1,4~{a},5,7-tetrahydropyrrolo[3,4-d]pyrimidin-7~{a}-yl]thiophen-3-yl]benzenecarbonitrile"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
60Y "Create component" 2016-01-12 RCSB
60Y "Initial release" 2016-03-16 RCSB
#