data_612 # _chem_comp.id 612 _chem_comp.name "6-(cyclohexylsulfanyl)-1-(ethoxymethyl)-5-(1-methylethyl)pyrimidine-2,4(1H,3H)-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H26 N2 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms TNK-6123 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-26 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 326.454 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 612 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1C1C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 612 C1 C1 C 0 1 N N N -1.262 -32.674 26.375 -2.074 -0.795 -0.096 C1 612 1 612 C2 C2 C 0 1 N N N -1.713 -32.267 27.770 -2.633 0.519 0.454 C2 612 2 612 C3 C3 C 0 1 N N N -0.879 -31.128 28.295 -3.727 0.217 1.480 C3 612 3 612 C4 C4 C 0 1 N N N 0.601 -31.498 28.297 -4.852 -0.574 0.808 C4 612 4 612 C5 C5 C 0 1 N N N 1.050 -31.889 26.895 -4.292 -1.887 0.257 C5 612 5 612 C6 C6 C 0 1 N N N 0.215 -33.043 26.385 -3.198 -1.585 -0.768 C6 612 6 612 S S S 0 1 N N N -2.233 -34.169 25.970 -0.779 -0.437 -1.310 S 612 7 612 C7 C7 C 0 1 N N N -2.282 -34.353 24.120 0.449 0.254 -0.252 C7 612 8 612 C12 C12 C 0 1 N N N -1.472 -35.273 23.469 0.704 1.598 -0.276 C12 612 9 612 CF CF C 0 1 N N N -0.703 -36.408 24.171 -0.060 2.505 -1.206 CF 612 10 612 CH CH C 0 1 N N N -1.546 -37.269 25.082 -0.811 3.558 -0.389 CH 612 11 612 CI CI C 0 1 N N N 0.594 -35.979 24.767 0.915 3.198 -2.158 CI 612 12 612 C11 C11 C 0 1 N N N -1.473 -35.330 22.017 1.687 2.121 0.578 C11 612 13 612 O11 O11 O 0 1 N N N -0.750 -36.073 21.366 1.931 3.315 0.574 O11 612 14 612 N8 N8 N 0 1 N N N -3.122 -33.491 23.390 1.156 -0.552 0.610 N8 612 15 612 C9 C9 C 0 1 N N N -3.173 -33.519 21.982 2.094 -0.024 1.418 C9 612 16 612 O9 O9 O 0 1 N N N -3.916 -32.788 21.330 2.710 -0.751 2.174 O9 612 17 612 N10 N10 N 0 1 N N N -2.332 -34.437 21.371 2.360 1.294 1.403 N10 612 18 612 CA CA C 0 1 N N N -4.043 -32.534 24.054 0.888 -1.991 0.647 CA 612 19 612 OB OB O 0 1 N N N -5.078 -33.204 24.765 1.495 -2.619 -0.483 OB 612 20 612 CC CC C 0 1 N N N -6.320 -33.159 24.056 2.904 -2.818 -0.351 CC 612 21 612 CD CD C 0 1 N N N -7.436 -33.735 24.892 3.423 -3.608 -1.554 CD 612 22 612 H1 H1 H 0 1 N N N -1.409 -31.858 25.652 -1.654 -1.382 0.720 H1 612 23 612 H2 H2 H 0 1 N N N -2.765 -31.950 27.727 -1.832 1.082 0.933 H2 612 24 612 H2A H2A H 0 1 N N N -1.595 -33.129 28.443 -3.052 1.106 -0.362 H2A 612 25 612 H3 H3 H 0 1 N N N -1.028 -30.248 27.652 -3.308 -0.370 2.297 H3 612 26 612 H3A H3A H 0 1 N N N -1.190 -30.908 29.327 -4.125 1.153 1.872 H3A 612 27 612 H4 H4 H 0 1 N N N 1.190 -30.633 28.637 -5.631 -0.789 1.539 H4 612 28 612 H4A H4A H 0 1 N N N 0.756 -32.351 28.974 -5.271 0.013 -0.009 H4A 612 29 612 H5 H5 H 0 1 N N N 0.929 -31.028 26.222 -3.873 -2.475 1.074 H5 612 30 612 H5A H5A H 0 1 N N N 2.106 -32.195 26.927 -5.093 -2.451 -0.221 H5A 612 31 612 H6 H6 H 0 1 N N N 0.364 -33.913 27.042 -3.617 -0.998 -1.585 H6 612 32 612 H6A H6A H 0 1 N N N 0.528 -33.281 25.358 -2.800 -2.521 -1.161 H6A 612 33 612 HF HF H 0 1 N N N -0.423 -37.088 23.353 -0.774 1.916 -1.782 HF 612 34 612 HH HH H 0 1 N N N -1.751 -38.232 24.591 -1.364 4.213 -1.061 HH 612 35 612 HHA HHA H 0 1 N N N -1.005 -37.445 26.024 -1.506 3.063 0.290 HHA 612 36 612 HHB HHB H 0 1 N N N -2.496 -36.757 25.295 -0.098 4.147 0.188 HHB 612 37 612 HI HI H 0 1 N N N 1.346 -35.873 23.972 1.450 2.448 -2.741 HI 612 38 612 HIA HIA H 0 1 N N N 0.461 -35.013 25.277 0.362 3.854 -2.831 HIA 612 39 612 HIB HIB H 0 1 N N N 0.931 -36.734 25.493 1.629 3.788 -1.582 HIB 612 40 612 HN10 HN10 H 0 0 N N N -2.341 -34.462 20.371 3.040 1.654 1.993 HN10 612 41 612 HA HA H 0 1 N N N -3.466 -31.923 24.764 1.301 -2.414 1.563 HA 612 42 612 HAA HAA H 0 1 N N N -4.509 -31.910 23.277 -0.189 -2.161 0.622 HAA 612 43 612 HC HC H 0 1 N N N -6.557 -32.112 23.814 3.405 -1.850 -0.308 HC 612 44 612 HCA HCA H 0 1 N N N -6.224 -33.755 23.137 3.108 -3.373 0.564 HCA 612 45 612 HD HD H 0 1 N N N -7.086 -33.875 25.925 3.219 -3.052 -2.469 HD 612 46 612 HDA HDA H 0 1 N N N -8.292 -33.045 24.886 4.498 -3.759 -1.452 HDA 612 47 612 HDB HDB H 0 1 N N N -7.743 -34.705 24.474 2.922 -4.575 -1.596 HDB 612 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 612 S C1 SING N N 1 612 C1 C6 SING N N 2 612 C1 C2 SING N N 3 612 C1 H1 SING N N 4 612 C2 C3 SING N N 5 612 C2 H2 SING N N 6 612 C2 H2A SING N N 7 612 C3 C4 SING N N 8 612 C3 H3 SING N N 9 612 C3 H3A SING N N 10 612 C5 C4 SING N N 11 612 C4 H4 SING N N 12 612 C4 H4A SING N N 13 612 C6 C5 SING N N 14 612 C5 H5 SING N N 15 612 C5 H5A SING N N 16 612 C6 H6 SING N N 17 612 C6 H6A SING N N 18 612 C7 S SING N N 19 612 N8 C7 SING N N 20 612 C12 C7 DOUB N N 21 612 C11 C12 SING N N 22 612 C12 CF SING N N 23 612 CF CI SING N N 24 612 CF CH SING N N 25 612 CF HF SING N N 26 612 CH HH SING N N 27 612 CH HHA SING N N 28 612 CH HHB SING N N 29 612 CI HI SING N N 30 612 CI HIA SING N N 31 612 CI HIB SING N N 32 612 O11 C11 DOUB N N 33 612 N10 C11 SING N N 34 612 C9 N8 SING N N 35 612 N8 CA SING N N 36 612 O9 C9 DOUB N N 37 612 N10 C9 SING N N 38 612 N10 HN10 SING N N 39 612 CA OB SING N N 40 612 CA HA SING N N 41 612 CA HAA SING N N 42 612 CC OB SING N N 43 612 CC CD SING N N 44 612 CC HC SING N N 45 612 CC HCA SING N N 46 612 CD HD SING N N 47 612 CD HDA SING N N 48 612 CD HDB SING N N 49 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 612 SMILES ACDLabs 10.04 "O=C2C(=C(SC1CCCCC1)N(C(=O)N2)COCC)C(C)C" 612 SMILES_CANONICAL CACTVS 3.341 "CCOCN1C(=O)NC(=O)C(=C1SC2CCCCC2)C(C)C" 612 SMILES CACTVS 3.341 "CCOCN1C(=O)NC(=O)C(=C1SC2CCCCC2)C(C)C" 612 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCOCN1C(=C(C(=O)NC1=O)C(C)C)SC2CCCCC2" 612 SMILES "OpenEye OEToolkits" 1.5.0 "CCOCN1C(=C(C(=O)NC1=O)C(C)C)SC2CCCCC2" 612 InChI InChI 1.03 "InChI=1S/C16H26N2O3S/c1-4-21-10-18-15(22-12-8-6-5-7-9-12)13(11(2)3)14(19)17-16(18)20/h11-12H,4-10H2,1-3H3,(H,17,19,20)" 612 InChIKey InChI 1.03 JKXLRLDPSLZEDD-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 612 "SYSTEMATIC NAME" ACDLabs 10.04 "6-(cyclohexylsulfanyl)-1-(ethoxymethyl)-5-(1-methylethyl)pyrimidine-2,4(1H,3H)-dione" 612 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "6-cyclohexylsulfanyl-1-(ethoxymethyl)-5-propan-2-yl-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 612 "Create component" 1999-07-26 RCSB 612 "Modify descriptor" 2011-06-04 RCSB 612 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 612 _pdbx_chem_comp_synonyms.name TNK-6123 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##