data_61T
#
_chem_comp.id 61T
_chem_comp.name "[(1~{R},2~{R},3~{S},4~{R})-2,3-bis(oxidanyl)-4-[[2-[3-(trifluoromethylsulfanyl)phenyl]pyrazolo[1,5-a]pyrimidin-7-yl]amino]cyclopentyl]methyl sulfamate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H20 F3 N5 O5 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms MLN7243
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-01-14
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 519.518
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 61T
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5L6J
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
61T O3 O1 O 0 1 N N N N N N -13.398 28.037 -14.324 3.868 -3.234 -1.372 O3 61T 1
61T O1 O2 O 0 1 N N N N N N -12.493 30.404 -19.983 7.161 3.298 -0.595 O1 61T 2
61T O2 O3 O 0 1 N N N N N N -12.518 27.979 -19.658 5.803 1.906 0.738 O2 61T 3
61T O4 O4 O 0 1 N N N N N N -14.331 27.281 -16.965 5.930 -1.830 -1.713 O4 61T 4
61T C5 C1 C 0 1 Y N N N N N -10.616 25.028 -13.454 1.506 -3.870 0.530 C5 61T 5
61T C6 C2 C 0 1 Y N N N N N -10.113 23.976 -12.506 0.766 -5.037 0.715 C6 61T 6
61T C7 C3 C 0 1 Y N N N N N -8.598 25.450 -11.692 -1.206 -3.837 0.570 C7 61T 7
61T C8 C4 C 0 1 Y N N N N N -7.601 26.002 -10.982 -2.556 -3.525 0.545 C8 61T 8
61T C9 C5 C 0 1 Y N N N N N -7.457 27.388 -11.425 -2.667 -2.146 0.343 C9 61T 9
61T C10 C6 C 0 1 Y N N N N N -6.541 28.417 -10.964 -3.938 -1.384 0.251 C10 61T 10
61T C13 C7 C 0 1 Y N N N N N -4.731 30.390 -10.043 -6.317 0.030 0.079 C13 61T 11
61T C14 C8 C 0 1 Y N N N N N -4.741 29.120 -9.494 -5.104 0.698 -0.039 C14 61T 12
61T C15 C9 C 0 1 Y N N N N N -5.624 28.141 -9.951 -3.912 -0.008 0.046 C15 61T 13
61T C16 C10 C 0 1 N N N N N N -2.387 27.649 -8.880 -6.840 2.874 -0.335 C16 61T 14
61T C17 C11 C 0 1 N N S N N N -12.482 28.165 -15.425 3.540 -1.848 -1.262 C17 61T 15
61T C18 C12 C 0 1 N N R N N N -13.078 27.939 -16.815 4.800 -0.990 -1.470 C18 61T 16
61T O O5 O 0 1 N N N N N N -13.666 29.068 -21.503 6.740 3.778 1.822 O 61T 17
61T S S1 S 0 1 N N N N N N -12.503 29.152 -20.681 6.312 3.327 0.544 S 61T 18
61T N N1 N 0 1 N N N N N N -11.166 29.170 -21.561 5.009 4.262 0.132 N 61T 19
61T C C13 C 0 1 N N N N N N -11.516 27.868 -18.652 5.508 1.223 -0.482 C 61T 20
61T C1 C14 C 0 1 N N R N N N -12.051 27.058 -17.517 5.007 -0.188 -0.168 C1 61T 21
61T C2 C15 C 0 1 N N N N N N -10.911 26.661 -16.589 3.598 -0.134 0.473 C2 61T 22
61T C3 C16 C 0 1 N N R N N N -11.385 27.180 -15.290 3.025 -1.538 0.159 C3 61T 23
61T N1 N2 N 0 1 N N N N N N -10.376 27.366 -14.271 1.561 -1.511 0.180 N1 61T 24
61T C4 C17 C 0 1 Y N N N N N -10.017 26.235 -13.416 0.852 -2.679 0.365 C4 61T 25
61T N2 N3 N 0 1 Y N N N N N -9.119 24.222 -11.639 -0.549 -4.996 0.730 N2 61T 26
61T N4 N4 N 0 1 Y N N N N N -9.027 26.388 -12.538 -0.517 -2.665 0.385 N4 61T 27
61T N3 N5 N 0 1 Y N N N N N -8.361 27.594 -12.424 -1.453 -1.634 0.248 N3 61T 28
61T C11 C18 C 0 1 Y N N N N N -6.538 29.697 -11.519 -5.159 -2.047 0.363 C11 61T 29
61T C12 C19 C 0 1 Y N N N N N -5.644 30.661 -11.059 -6.340 -1.337 0.277 C12 61T 30
61T S1 S2 S 0 1 N N N N N N -3.693 28.676 -8.268 -5.079 2.441 -0.298 S1 61T 31
61T F2 F1 F 0 1 N N N N N N -1.482 27.439 -7.945 -7.433 2.519 0.882 F2 61T 32
61T F F2 F 0 1 N N N N N N -1.776 28.321 -9.825 -6.978 4.251 -0.537 F 61T 33
61T F1 F3 F 0 1 N N N N N N -2.846 26.488 -9.337 -7.468 2.184 -1.377 F1 61T 34
61T H1 H1 H 0 1 N N N N N N -12.937 28.194 -13.508 4.198 -3.492 -2.244 H1 61T 35
61T H2 H2 H 0 1 N N N N N N -15.011 27.793 -16.542 5.850 -2.376 -2.507 H2 61T 36
61T H3 H3 H 0 1 N N N N N N -11.426 24.825 -14.139 2.586 -3.904 0.522 H3 61T 37
61T H4 H4 H 0 1 N N N N N N -10.564 22.995 -12.523 1.275 -5.981 0.846 H4 61T 38
61T H5 H5 H 0 1 N N N N N N -7.012 25.511 -10.221 -3.374 -4.221 0.660 H5 61T 39
61T H6 H6 H 0 1 N N N N N N -4.040 31.144 -9.696 -7.244 0.581 0.013 H6 61T 40
61T H7 H7 H 0 1 N N N N N N -5.597 27.154 -9.513 -2.968 0.509 -0.045 H7 61T 41
61T H8 H8 H 0 1 N N N N N N -12.044 29.174 -15.408 2.781 -1.584 -1.999 H8 61T 42
61T H9 H9 H 0 1 N N N N N N -13.109 28.908 -17.334 4.654 -0.309 -2.309 H9 61T 43
61T H10 H10 H 0 1 N N N N N N -10.370 29.229 -20.958 4.769 4.375 -0.801 H10 61T 44
61T H11 H11 H 0 1 N N N N N N -11.112 28.331 -22.102 4.486 4.698 0.823 H11 61T 45
61T H12 H12 H 0 1 N N N N N N -10.627 27.374 -19.071 4.737 1.769 -1.027 H12 61T 46
61T H13 H13 H 0 1 N N N N N N -11.243 28.871 -18.292 6.409 1.162 -1.092 H13 61T 47
61T H14 H14 H 0 1 N N N N N N -12.544 26.153 -17.902 5.708 -0.703 0.489 H14 61T 48
61T H15 H15 H 0 1 N N N N N N -10.779 25.569 -16.560 3.669 0.023 1.549 H15 61T 49
61T H16 H16 H 0 1 N N N N N N -9.966 27.136 -16.890 2.992 0.643 0.008 H16 61T 50
61T H17 H17 H 0 1 N N N N N N -11.930 26.308 -14.899 3.404 -2.272 0.870 H17 61T 51
61T H18 H18 H 0 1 N N N N N N -9.540 27.659 -14.736 1.090 -0.671 0.064 H18 61T 52
61T H19 H19 H 0 1 N N N N N N -7.232 29.942 -12.309 -5.181 -3.115 0.517 H19 61T 53
61T H20 H20 H 0 1 N N N N N N -5.659 31.646 -11.502 -7.285 -1.853 0.364 H20 61T 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
61T N S SING N N 1
61T O S DOUB N N 2
61T S O1 DOUB N N 3
61T S O2 SING N N 4
61T O2 C SING N N 5
61T C C1 SING N N 6
61T C1 C18 SING N N 7
61T C1 C2 SING N N 8
61T O4 C18 SING N N 9
61T C18 C17 SING N N 10
61T C2 C3 SING N N 11
61T C17 C3 SING N N 12
61T C17 O3 SING N N 13
61T C3 N1 SING N N 14
61T N1 C4 SING N N 15
61T C5 C4 DOUB Y N 16
61T C5 C6 SING Y N 17
61T C4 N4 SING Y N 18
61T N4 N3 SING Y N 19
61T N4 C7 SING Y N 20
61T C6 N2 DOUB Y N 21
61T N3 C9 DOUB Y N 22
61T C7 N2 SING Y N 23
61T C7 C8 DOUB Y N 24
61T C11 C12 DOUB Y N 25
61T C11 C10 SING Y N 26
61T C9 C8 SING Y N 27
61T C9 C10 SING N N 28
61T C12 C13 SING Y N 29
61T C10 C15 DOUB Y N 30
61T C13 C14 DOUB Y N 31
61T C15 C14 SING Y N 32
61T F C16 SING N N 33
61T C14 S1 SING N N 34
61T F1 C16 SING N N 35
61T C16 S1 SING N N 36
61T C16 F2 SING N N 37
61T O3 H1 SING N N 38
61T O4 H2 SING N N 39
61T C5 H3 SING N N 40
61T C6 H4 SING N N 41
61T C8 H5 SING N N 42
61T C13 H6 SING N N 43
61T C15 H7 SING N N 44
61T C17 H8 SING N N 45
61T C18 H9 SING N N 46
61T N H10 SING N N 47
61T N H11 SING N N 48
61T C H12 SING N N 49
61T C H13 SING N N 50
61T C1 H14 SING N N 51
61T C2 H15 SING N N 52
61T C2 H16 SING N N 53
61T C3 H17 SING N N 54
61T N1 H18 SING N N 55
61T C11 H19 SING N N 56
61T C12 H20 SING N N 57
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
61T InChI InChI 1.03 "InChI=1S/C19H20F3N5O5S2/c20-19(21,22)33-12-3-1-2-10(6-12)13-8-16-24-5-4-15(27(16)26-13)25-14-7-11(17(28)18(14)29)9-32-34(23,30)31/h1-6,8,11,14,17-18,25,28-29H,7,9H2,(H2,23,30,31)/t11-,14-,17-,18+/m1/s1"
61T InChIKey InChI 1.03 KJDAGXLMHXUAGV-DGWLBADLSA-N
61T SMILES_CANONICAL CACTVS 3.385 "N[S](=O)(=O)OC[C@H]1C[C@@H](Nc2ccnc3cc(nn23)c4cccc(SC(F)(F)F)c4)[C@H](O)[C@@H]1O"
61T SMILES CACTVS 3.385 "N[S](=O)(=O)OC[CH]1C[CH](Nc2ccnc3cc(nn23)c4cccc(SC(F)(F)F)c4)[CH](O)[CH]1O"
61T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1cc(cc(c1)SC(F)(F)F)c2cc3nccc(n3n2)N[C@@H]4C[C@@H]([C@H]([C@H]4O)O)COS(=O)(=O)N"
61T SMILES "OpenEye OEToolkits" 2.0.5 "c1cc(cc(c1)SC(F)(F)F)c2cc3nccc(n3n2)NC4CC(C(C4O)O)COS(=O)(=O)N"
#
_pdbx_chem_comp_identifier.comp_id 61T
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.5
_pdbx_chem_comp_identifier.identifier "[(1~{R},2~{R},3~{S},4~{R})-2,3-bis(oxidanyl)-4-[[2-[3-(trifluoromethylsulfanyl)phenyl]pyrazolo[1,5-a]pyrimidin-7-yl]amino]cyclopentyl]methyl sulfamate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
61T "Create component" 2016-01-14 EBI
61T "Other modification" 2016-07-04 EBI
61T "Initial release" 2017-06-14 RCSB
61T "Modify synonyms" 2021-03-01 PDBE
61T "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 61T
_pdbx_chem_comp_synonyms.name MLN7243
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 61T
_pdbx_chem_comp_pcm.modified_residue_id GLY
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid backbone"
_pdbx_chem_comp_pcm.polypeptide_position C-terminal
_pdbx_chem_comp_pcm.comp_id_linking_atom N
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom C
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#