data_62B # _chem_comp.id 62B _chem_comp.name Lefamulin _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H45 N O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-01-15 _chem_comp.pdbx_modified_date 2016-12-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 507.726 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 62B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5HL7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 62B C10 C10 C 0 1 N N R 17.580 -81.693 -4.195 3.798 0.860 0.790 C10 62B 1 62B C11 C11 C 0 1 N N S 16.023 -81.356 -4.286 3.722 1.704 -0.454 C11 62B 2 62B C12 C12 C 0 1 N N S 15.528 -79.965 -3.786 2.373 2.102 -0.895 C12 62B 3 62B C13 C13 C 0 1 N N N 15.692 -79.663 -2.332 1.557 0.860 -1.318 C13 62B 4 62B C14 C14 C 0 1 N N R 17.138 -79.413 -1.946 1.272 -0.123 -0.169 C14 62B 5 62B C15 C15 C 0 1 N N N 16.829 -80.195 0.280 1.645 -2.267 -1.094 C15 62B 6 62B C16 C16 C 0 1 N N N 19.742 -79.323 -0.018 0.826 -2.174 1.765 C16 62B 7 62B C17 C17 C 0 1 N N N 17.983 -82.600 -5.353 4.572 1.651 1.865 C17 62B 8 62B C18 C18 C 0 1 N N N 14.080 -79.608 -4.144 2.524 3.024 -2.121 C18 62B 9 62B C19 C19 C 0 1 N N N 16.448 -78.901 -4.335 1.661 2.876 0.183 C19 62B 10 62B C20 C20 C 0 1 N N N 17.100 -78.886 -5.467 1.263 4.102 -0.047 C20 62B 11 62B C21 C21 C 0 1 N N N 17.823 -77.150 -1.736 -1.110 -0.042 0.062 C21 62B 12 62B C22 C22 C 0 1 N N N 17.543 -75.884 -0.981 -2.502 -0.565 -0.185 C22 62B 13 62B C23 C23 C 0 1 N N R 16.481 -73.600 -2.269 -5.295 -0.261 0.226 C23 62B 14 62B C24 C24 C 0 1 N N N 15.970 -74.295 -3.540 -5.529 -0.189 -1.284 C24 62B 15 62B C25 C25 C 0 1 N N N 14.877 -73.560 -4.316 -6.868 -0.846 -1.625 C25 62B 16 62B C26 C26 C 0 1 N N R 15.547 -72.223 -4.689 -7.996 -0.112 -0.898 C26 62B 17 62B C27 C27 C 0 1 N N N 15.817 -71.453 -3.389 -7.762 -0.184 0.612 C27 62B 18 62B C28 C28 C 0 1 N N R 16.863 -72.146 -2.526 -6.423 0.473 0.953 C28 62B 19 62B C1 C1 C 0 1 N N N 18.004 -83.845 -2.941 5.880 -0.341 -0.249 C1 62B 20 62B C2 C2 C 0 1 N N N 17.157 -84.273 -1.783 5.942 -1.719 -0.964 C2 62B 21 62B C3 C3 C 0 1 N N N 17.263 -83.155 -0.800 4.493 -2.184 -1.132 C3 62B 22 62B C4 C4 C 0 1 N N R 17.297 -81.894 -1.634 3.632 -1.080 -0.621 C4 62B 23 62B C5 C5 C 0 1 N N R 17.646 -80.524 -0.981 2.273 -1.276 -0.099 C5 62B 24 62B C6 C6 C 0 1 N N R 19.173 -80.563 -0.684 2.236 -2.071 1.193 C6 62B 25 62B C7 C7 C 0 1 N N N 19.915 -80.820 -1.987 3.172 -1.483 2.249 C7 62B 26 62B C8 C8 C 0 1 N N N 19.582 -82.179 -2.571 4.584 -1.350 1.674 C8 62B 27 62B C9 C9 C 0 1 N N S 18.084 -82.311 -2.859 4.556 -0.406 0.481 C9 62B 28 62B N1 N1 N 0 1 N N N 14.749 -71.449 -5.652 -9.282 -0.743 -1.225 N1 62B 29 62B O1 O1 O 0 1 N N N 17.358 -83.273 0.394 4.166 -3.251 -1.594 O1 62B 30 62B O2 O2 O 0 1 N N N 15.566 -81.587 -5.620 4.474 2.907 -0.218 O2 62B 31 62B O3 O3 O 0 1 N N N 17.129 -78.166 -1.212 -0.050 -0.688 -0.449 O3 62B 32 62B O4 O4 O 0 1 N N N 18.569 -77.257 -2.671 -0.948 0.958 0.720 O4 62B 33 62B O5 O5 O 0 1 N N N 16.986 -71.478 -1.266 -6.205 0.405 2.363 O5 62B 34 62B S1 S1 S 0 1 N N N 18.073 -74.377 -1.828 -3.707 0.518 0.630 S1 62B 35 62B H10 H10 H 0 1 N N N 18.113 -80.740 -4.327 2.814 0.632 1.181 H10 62B 36 62B H11 H11 H 0 1 N N N 15.528 -82.097 -3.641 4.214 1.185 -1.279 H11 62B 37 62B H13 H13 H 0 1 N N N 15.103 -78.766 -2.090 0.590 1.199 -1.719 H13 62B 38 62B H13A H13A H 0 0 N N N 15.315 -80.517 -1.750 2.073 0.340 -2.126 H13A 62B 39 62B H14 H14 H 0 1 N N N 17.779 -79.360 -2.839 1.215 0.390 0.778 H14 62B 40 62B H15 H15 H 0 1 N N N 17.080 -80.910 1.077 1.583 -1.803 -2.078 H15 62B 41 62B H15A H15A H 0 0 N N N 17.067 -79.175 0.615 2.263 -3.163 -1.153 H15A 62B 42 62B H15B H15B H 0 0 N N N 15.756 -80.265 0.050 0.645 -2.537 -0.756 H15B 62B 43 62B H16 H16 H 0 1 N N N 20.822 -79.456 0.145 0.176 -2.670 1.044 H16 62B 44 62B H16A H16A H 0 0 N N N 19.574 -78.450 -0.665 0.850 -2.751 2.690 H16A 62B 45 62B H16B H16B H 0 0 N N N 19.242 -79.164 0.949 0.443 -1.174 1.972 H16B 62B 46 62B H17 H17 H 0 1 N N N 19.057 -82.828 -5.284 4.049 2.583 2.078 H17 62B 47 62B H17A H17A H 0 0 N N N 17.406 -83.535 -5.304 4.638 1.056 2.776 H17A 62B 48 62B H17B H17B H 0 0 N N N 17.777 -82.091 -6.306 5.575 1.872 1.502 H17B 62B 49 62B H18 H18 H 0 1 N N N 13.838 -78.612 -3.745 3.127 2.524 -2.880 H18 62B 50 62B H18A H18A H 0 0 N N N 13.964 -79.603 -5.238 1.539 3.249 -2.530 H18A 62B 51 62B H18B H18B H 0 0 N N N 13.400 -80.354 -3.707 3.013 3.951 -1.821 H18B 62B 52 62B H19 H19 H 0 1 N N N 16.586 -78.034 -3.706 1.479 2.420 1.145 H19 62B 53 62B H20 H20 H 0 1 N N N 17.725 -78.042 -5.719 0.752 4.658 0.726 H20 62B 54 62B H20A H20A H 0 0 N N N 17.014 -79.717 -6.151 1.445 4.558 -1.009 H20A 62B 55 62B H22 H22 H 0 1 N N N 16.459 -75.819 -0.809 -2.698 -0.585 -1.257 H22 62B 56 62B H22A H22A H 0 0 N N N 18.065 -75.937 -0.014 -2.588 -1.573 0.220 H22A 62B 57 62B H23 H23 H 0 1 N N N 15.787 -73.711 -1.422 -5.278 -1.304 0.541 H23 62B 58 62B H24 H24 H 0 1 N N N 16.827 -74.432 -4.216 -5.546 0.855 -1.600 H24 62B 59 62B H24A H24A H 0 0 N N N 15.572 -75.278 -3.248 -4.725 -0.712 -1.802 H24A 62B 60 62B H25 H25 H 0 1 N N N 14.588 -74.121 -5.217 -7.035 -0.794 -2.701 H25 62B 61 62B H25A H25A H 0 0 N N N 13.990 -73.395 -3.687 -6.851 -1.889 -1.310 H25A 62B 62 62B H26 H26 H 0 1 N N N 16.519 -72.455 -5.148 -8.013 0.931 -1.214 H26 62B 63 62B H27 H27 H 0 1 N N N 16.175 -70.444 -3.641 -8.566 0.339 1.130 H27 62B 64 62B H27A H27A H 0 0 N N N 14.879 -71.377 -2.819 -7.745 -1.228 0.928 H27A 62B 65 62B H28 H28 H 0 1 N N N 17.827 -72.125 -3.056 -6.440 1.516 0.637 H28 62B 66 62B H1 H1 H 0 1 N N N 19.009 -84.285 -2.864 6.701 -0.239 0.463 H1 62B 67 62B H1A H1A H 0 1 N N N 17.540 -84.154 -3.889 5.893 0.474 -0.968 H1A 62B 68 62B H2 H2 H 0 1 N N N 16.113 -84.414 -2.098 6.412 -1.615 -1.942 H2 62B 69 62B H2A H2A H 0 1 N N N 17.539 -85.209 -1.348 6.495 -2.436 -0.358 H2A 62B 70 62B H4 H4 H 0 1 N N N 16.265 -81.769 -1.994 3.551 -0.374 -1.444 H4 62B 71 62B H6 H6 H 0 1 N N N 19.357 -81.418 -0.017 2.585 -3.092 0.970 H6 62B 72 62B H7 H7 H 0 1 N N N 19.636 -80.043 -2.714 2.800 -0.517 2.580 H7 62B 73 62B H7A H7A H 0 1 N N N 20.997 -80.771 -1.795 3.201 -2.159 3.111 H7A 62B 74 62B H8 H8 H 0 1 N N N 20.140 -82.312 -3.510 5.261 -0.967 2.435 H8 62B 75 62B H8A H8A H 0 1 N N N 19.879 -82.959 -1.854 4.935 -2.331 1.346 H8A 62B 76 62B HN1 HN1 H 0 1 N N N 15.220 -70.593 -5.864 -9.460 -0.708 -2.218 HN1 62B 77 62B HN1A HN1A H 0 0 N N N 14.631 -71.981 -6.490 -9.315 -1.693 -0.885 HN1A 62B 78 62B HO2 HO2 H 0 1 N N N 14.639 -81.387 -5.677 4.570 3.470 -0.998 HO2 62B 79 62B HO5 HO5 H 0 1 N N N 17.224 -70.570 -1.411 -6.883 0.851 2.888 HO5 62B 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 62B C10 C11 SING N N 1 62B C10 C17 SING N N 2 62B C10 C9 SING N N 3 62B C11 C12 SING N N 4 62B C11 O2 SING N N 5 62B C12 C13 SING N N 6 62B C12 C18 SING N N 7 62B C12 C19 SING N N 8 62B C13 C14 SING N N 9 62B C14 C5 SING N N 10 62B C14 O3 SING N N 11 62B C15 C5 SING N N 12 62B C16 C6 SING N N 13 62B C19 C20 DOUB N N 14 62B C21 C22 SING N N 15 62B C21 O3 SING N N 16 62B C21 O4 DOUB N N 17 62B C22 S1 SING N N 18 62B C23 C24 SING N N 19 62B C23 C28 SING N N 20 62B C23 S1 SING N N 21 62B C24 C25 SING N N 22 62B C25 C26 SING N N 23 62B C26 C27 SING N N 24 62B C26 N1 SING N N 25 62B C27 C28 SING N N 26 62B C28 O5 SING N N 27 62B C1 C2 SING N N 28 62B C1 C9 SING N N 29 62B C2 C3 SING N N 30 62B C3 C4 SING N N 31 62B C3 O1 DOUB N N 32 62B C4 C5 SING N N 33 62B C4 C9 SING N N 34 62B C5 C6 SING N N 35 62B C6 C7 SING N N 36 62B C7 C8 SING N N 37 62B C8 C9 SING N N 38 62B C10 H10 SING N N 39 62B C11 H11 SING N N 40 62B C13 H13 SING N N 41 62B C13 H13A SING N N 42 62B C14 H14 SING N N 43 62B C15 H15 SING N N 44 62B C15 H15A SING N N 45 62B C15 H15B SING N N 46 62B C16 H16 SING N N 47 62B C16 H16A SING N N 48 62B C16 H16B SING N N 49 62B C17 H17 SING N N 50 62B C17 H17A SING N N 51 62B C17 H17B SING N N 52 62B C18 H18 SING N N 53 62B C18 H18A SING N N 54 62B C18 H18B SING N N 55 62B C19 H19 SING N N 56 62B C20 H20 SING N N 57 62B C20 H20A SING N N 58 62B C22 H22 SING N N 59 62B C22 H22A SING N N 60 62B C23 H23 SING N N 61 62B C24 H24 SING N N 62 62B C24 H24A SING N N 63 62B C25 H25 SING N N 64 62B C25 H25A SING N N 65 62B C26 H26 SING N N 66 62B C27 H27 SING N N 67 62B C27 H27A SING N N 68 62B C28 H28 SING N N 69 62B C1 H1 SING N N 70 62B C1 H1A SING N N 71 62B C2 H2 SING N N 72 62B C2 H2A SING N N 73 62B C4 H4 SING N N 74 62B C6 H6 SING N N 75 62B C7 H7 SING N N 76 62B C7 H7A SING N N 77 62B C8 H8 SING N N 78 62B C8 H8A SING N N 79 62B N1 HN1 SING N N 80 62B N1 HN1A SING N N 81 62B O2 HO2 SING N N 82 62B O5 HO5 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 62B SMILES ACDLabs 12.01 "C1(C(C(CC(C3(C)C2C(CCC12CCC3C)=O)OC(CSC4CCC(CC4O)N)=O)(C)\C=C)O)C" 62B InChI InChI 1.03 "InChI=1S/C28H45NO5S/c1-6-26(4)14-22(34-23(32)15-35-21-8-7-18(29)13-20(21)31)27(5)16(2)9-11-28(17(3)25(26)33)12-10-19(30)24(27)28/h6,16-18,20-22,24-25,31,33H,1,7-15,29H2,2-5H3/t16-,17+,18-,20-,21-,22-,24+,25+,26-,27+,28+/m1/s1" 62B InChIKey InChI 1.03 KPVIXBKIJXZQJX-FCEONZPQSA-N 62B SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CC[C@@]23CCC(=O)[C@H]2[C@]1(C)[C@@H](C[C@@](C)(C=C)[C@@H](O)[C@@H]3C)OC(=O)CS[C@@H]4CC[C@@H](N)C[C@H]4O" 62B SMILES CACTVS 3.385 "C[CH]1CC[C]23CCC(=O)[CH]2[C]1(C)[CH](C[C](C)(C=C)[CH](O)[CH]3C)OC(=O)CS[CH]4CC[CH](N)C[CH]4O" 62B SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1CC[C@@]23CCC(=O)[C@H]2[C@@]1([C@@H](C[C@@]([C@H]([C@@H]3C)O)(C)C=C)OC(=O)CS[C@@H]4CC[C@H](C[C@H]4O)N)C" 62B SMILES "OpenEye OEToolkits" 1.7.6 "CC1CCC23CCC(=O)C2C1(C(CC(C(C3C)O)(C)C=C)OC(=O)CSC4CCC(CC4O)N)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 62B "SYSTEMATIC NAME" ACDLabs 12.01 "(3aS,4R,5S,6S,8R,9R,9aR,10R)-6-ethenyl-5-hydroxy-4,6,9,10-tetramethyl-1-oxodecahydro-3a,9-propanocyclopenta[8]annulen-8-yl {[(1R,2R,4R)-4-amino-2-hydroxycyclohexyl]sulfanyl}acetate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 62B "Create component" 2016-01-15 EBI 62B "Other modification" 2016-01-29 EBI 62B "Initial release" 2016-12-21 RCSB #