data_655 # _chem_comp.id 655 _chem_comp.name "2-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}-6-(CYCLOPENTYLOXY)BENZENOLATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H20 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms CRA_10655 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-03-14 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 336.388 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 655 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1O2I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 655 C1 C1 C 0 1 Y N N 44.291 -2.880 26.677 5.173 0.360 -0.084 C1 655 1 655 C2 C2 C 0 1 Y N N 44.873 -1.560 26.654 5.275 -0.932 -0.613 C2 655 2 655 C3 C3 C 0 1 Y N N 44.873 -0.770 27.787 4.164 -1.714 -0.750 C3 655 3 655 C4 C4 C 0 1 Y N N 44.355 -1.292 28.933 2.919 -1.232 -0.363 C4 655 4 655 C5 C5 C 0 1 Y N N 43.827 -2.537 29.007 2.798 0.065 0.171 C5 655 5 655 C6 C6 C 0 1 Y N N 43.774 -3.366 27.881 3.937 0.858 0.314 C6 655 6 655 C7 C7 C 0 1 N N N 44.318 -3.671 25.494 6.384 1.195 0.059 C7 655 7 655 N1 N1 N 0 1 N N N 44.178 -4.971 25.588 6.290 2.425 0.562 N1 655 8 655 N2 N2 N 1 1 N N N 44.491 -3.069 24.321 7.570 0.718 -0.316 N2 655 9 655 N3 N3 N 0 1 Y N N 44.275 -0.785 30.116 1.646 -1.763 -0.375 N3 655 10 655 N4 N4 N 0 1 Y N N 43.391 -2.810 30.222 1.486 0.260 0.454 N4 655 11 655 C8 C8 C 0 1 Y N N 43.686 -1.687 30.869 0.803 -0.812 0.135 C8 655 12 655 "C1'" "C1'" C 0 1 Y N N 43.410 -1.528 32.217 -0.656 -0.970 0.300 "C1'" 655 13 655 "C2'" "C2'" C 0 1 Y N N 43.036 -2.629 32.993 -1.184 -2.185 0.743 "C2'" 655 14 655 "C3'" "C3'" C 0 1 Y N N 42.750 -2.505 34.337 -2.547 -2.329 0.896 "C3'" 655 15 655 "C4'" "C4'" C 0 1 Y N N 42.848 -1.252 34.930 -3.398 -1.274 0.612 "C4'" 655 16 655 "C5'" "C5'" C 0 1 Y N N 43.212 -0.122 34.156 -2.888 -0.064 0.172 "C5'" 655 17 655 "O5'" "O5'" O 0 1 N N N 43.340 1.149 34.674 -3.729 0.968 -0.105 "O5'" 655 18 655 "C6'" "C6'" C 0 1 Y N N 43.495 -0.277 32.801 -1.515 0.097 0.018 "C6'" 655 19 655 "O6'" "O6'" O -1 1 N N N 43.848 0.796 32.007 -1.011 1.283 -0.414 "O6'" 655 20 655 C1B "C1''" C 0 1 N N N 42.342 2.768 35.854 -5.928 1.786 0.535 C1B 655 21 655 C2B "C2''" C 0 1 N N N 43.005 1.442 36.025 -5.036 0.555 0.298 C2B 655 22 655 C3B "C3''" C 0 1 N N N 44.274 1.687 36.796 -5.703 -0.262 -0.827 C3B 655 23 655 C4B "C4''" C 0 1 N N N 44.575 3.166 36.573 -7.192 0.161 -0.773 C4B 655 24 655 C5B "C5''" C 0 1 N N N 43.188 3.750 36.615 -7.106 1.674 -0.455 C5B 655 25 655 HC2 HC2 H 0 1 N N N 45.275 -1.151 25.731 6.239 -1.313 -0.916 HC2 655 26 655 HC3 HC3 H 0 1 N N N 45.307 0.210 27.779 4.253 -2.709 -1.160 HC3 655 27 655 HC6 HC6 H 0 1 N N N 43.338 -4.351 27.936 3.858 1.853 0.727 HC6 655 28 655 HH11 HH11 H 0 0 N N N 44.031 -5.397 26.486 5.426 2.772 0.835 HH11 655 29 655 HH12 HH12 H 0 0 N N N 44.146 -5.577 24.813 7.085 2.973 0.656 HH12 655 30 655 HH21 HH21 H 0 0 N N N 44.580 -2.058 24.274 8.365 1.267 -0.223 HH21 655 31 655 HH22 HH22 H 0 0 N N N 44.559 -3.550 23.451 7.640 -0.178 -0.679 HH22 655 32 655 HN3 HN3 H 0 1 N N N 44.586 0.114 30.325 1.395 -2.647 -0.687 HN3 655 33 655 "HC2'" "HC2'" H 0 0 N N N 42.964 -3.601 32.534 -0.526 -3.011 0.966 "HC2'" 655 34 655 "HC3'" "HC3'" H 0 0 N N N 42.460 -3.375 34.915 -2.953 -3.270 1.239 "HC3'" 655 35 655 "HC4'" "HC4'" H 0 0 N N N 42.630 -1.183 35.983 -4.464 -1.396 0.734 "HC4'" 655 36 655 H1A H1A H 0 1 N N N 42.363 3.049 34.819 -6.300 1.786 1.560 H1A 655 37 655 H1B H1B H 0 1 N N N 41.314 2.736 36.203 -5.364 2.699 0.342 H1B 655 38 655 H2A H2A H 0 1 N N N 42.368 0.707 36.497 -4.975 -0.042 1.208 H2A 655 39 655 H3A H3A H 0 1 N N N 44.057 1.582 37.841 -5.269 -0.006 -1.794 H3A 655 40 655 H3B H3B H 0 1 N N N 45.029 0.980 36.498 -5.603 -1.330 -0.634 H3B 655 41 655 H4A H4A H 0 1 N N N 45.004 3.357 35.588 -7.716 -0.372 0.021 H4A 655 42 655 H4B H4B H 0 1 N N N 45.218 3.587 37.326 -7.676 -0.005 -1.735 H4B 655 43 655 H5A H5A H 0 1 N N N 43.114 4.708 36.135 -8.029 2.019 0.011 H5A 655 44 655 H5B H5B H 0 1 N N N 42.830 3.807 37.626 -6.899 2.243 -1.361 H5B 655 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 655 C1 C2 DOUB Y N 1 655 C1 C6 SING Y N 2 655 C1 C7 SING N N 3 655 C2 C3 SING Y N 4 655 C2 HC2 SING N N 5 655 C3 C4 DOUB Y N 6 655 C3 HC3 SING N N 7 655 C4 C5 SING Y N 8 655 C4 N3 SING Y N 9 655 C5 C6 DOUB Y N 10 655 C5 N4 SING Y N 11 655 C6 HC6 SING N N 12 655 C7 N1 SING N N 13 655 C7 N2 DOUB N N 14 655 N1 HH11 SING N N 15 655 N1 HH12 SING N N 16 655 N2 HH21 SING N N 17 655 N2 HH22 SING N N 18 655 N3 C8 SING Y N 19 655 N3 HN3 SING N N 20 655 N4 C8 DOUB Y N 21 655 C8 "C1'" SING Y N 22 655 "C1'" "C2'" DOUB Y N 23 655 "C1'" "C6'" SING Y N 24 655 "C2'" "C3'" SING Y N 25 655 "C2'" "HC2'" SING N N 26 655 "C3'" "C4'" DOUB Y N 27 655 "C3'" "HC3'" SING N N 28 655 "C4'" "C5'" SING Y N 29 655 "C4'" "HC4'" SING N N 30 655 "C5'" "O5'" SING N N 31 655 "C5'" "C6'" DOUB Y N 32 655 "O5'" C2B SING N N 33 655 "C6'" "O6'" SING N N 34 655 C1B C2B SING N N 35 655 C1B C5B SING N N 36 655 C1B H1A SING N N 37 655 C1B H1B SING N N 38 655 C2B C3B SING N N 39 655 C2B H2A SING N N 40 655 C3B C4B SING N N 41 655 C3B H3A SING N N 42 655 C3B H3B SING N N 43 655 C4B C5B SING N N 44 655 C4B H4A SING N N 45 655 C4B H4B SING N N 46 655 C5B H5A SING N N 47 655 C5B H5B SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 655 SMILES ACDLabs 10.04 "[O-]c4c(OC1CCCC1)cccc4c3nc2cc(ccc2n3)\C(=[NH2+])N" 655 SMILES_CANONICAL CACTVS 3.341 "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cccc(OC4CCCC4)c3[O-]" 655 SMILES CACTVS 3.341 "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cccc(OC4CCCC4)c3[O-]" 655 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(c(c(c1)OC2CCCC2)[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N" 655 SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(c(c(c1)OC2CCCC2)[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N" 655 InChI InChI 1.03 "InChI=1S/C19H20N4O2/c20-18(21)11-8-9-14-15(10-11)23-19(22-14)13-6-3-7-16(17(13)24)25-12-4-1-2-5-12/h3,6-10,12,24H,1-2,4-5H2,(H3,20,21)(H,22,23)" 655 InChIKey InChI 1.03 WCFWDBPDMBXMTQ-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 655 "SYSTEMATIC NAME" ACDLabs 10.04 "2-{5-[amino(iminio)methyl]-1H-benzimidazol-2-yl}-6-(cyclopentyloxy)phenolate" 655 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[5-(amino-azaniumylidene-methyl)-1H-benzimidazol-2-yl]-6-cyclopentyloxy-phenolate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 655 "Create component" 2003-03-14 RCSB 655 "Modify aromatic_flag" 2011-06-04 RCSB 655 "Modify descriptor" 2011-06-04 RCSB 655 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 655 _pdbx_chem_comp_synonyms.name CRA_10655 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##