data_65B
#
_chem_comp.id 65B
_chem_comp.name "4-({6-AMINO-5-BROMO-2-[(4-CYANOPHENYL)AMINO]PYRIMIDIN-4-YL}OXY)-3,5-DIMETHYLBENZONITRILE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAD
_chem_comp.formula "C20 H15 Br N6 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Etravine; Etravirine"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-04-15
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 435.277
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 65B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1SV5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
65B C1 C1 C 0 1 Y N N 142.792 -23.495 70.420 -2.972 0.394 0.033 C1 65B 1
65B O17 O17 O 0 1 N N N 142.931 -24.097 69.133 -2.363 -0.819 0.010 O17 65B 2
65B C2 C2 C 0 1 Y N N 142.513 -22.048 70.545 -3.326 1.013 -1.160 C2 65B 3
65B "C2'" "C2'" C 0 1 N N N 142.347 -21.111 69.333 -3.033 0.338 -2.475 "C2'" 65B 4
65B C3 C3 C 0 1 Y N N 142.372 -21.457 71.841 -3.944 2.244 -1.141 C3 65B 5
65B C4 C4 C 0 1 Y N N 142.507 -22.241 73.019 -4.216 2.869 0.079 C4 65B 6
65B C5 C5 C 0 1 Y N N 142.776 -23.638 72.927 -3.858 2.243 1.276 C5 65B 7
65B C6 C6 C 0 1 Y N N 142.931 -24.288 71.658 -3.244 1.010 1.248 C6 65B 8
65B "C6'" "C6'" C 0 1 N N N 143.230 -25.803 71.656 -2.863 0.330 2.538 "C6'" 65B 9
65B C13 C13 C 0 1 Y N N 141.705 -24.841 68.768 -1.008 -0.851 -0.039 C13 65B 10
65B N12 N12 N 0 1 Y N N 141.329 -25.977 69.466 -0.309 0.280 -0.063 N12 65B 11
65B C11 C11 C 0 1 Y N N 140.161 -26.732 69.173 1.014 0.259 -0.111 C11 65B 12
65B N5 N5 N 0 1 N N N 139.786 -27.862 69.875 1.708 1.459 -0.135 N5 65B 13
65B N16 N16 N 0 1 Y N N 139.368 -26.306 68.120 1.692 -0.878 -0.135 N16 65B 14
65B C15 C15 C 0 1 Y N N 139.695 -25.180 67.388 1.060 -2.048 -0.112 C15 65B 15
65B N18 N18 N 0 1 N N N 138.887 -24.843 66.395 1.776 -3.235 -0.138 N18 65B 16
65B C14 C14 C 0 1 Y N N 140.877 -24.423 67.710 -0.333 -2.065 -0.058 C14 65B 17
65B C21 C21 C 0 1 Y N N 140.556 -28.626 70.758 3.100 1.461 -0.068 C21 65B 18
65B C22 C22 C 0 1 Y N N 140.764 -28.368 72.243 3.826 2.431 -0.752 C22 65B 19
65B C23 C23 C 0 1 Y N N 141.598 -29.244 73.048 5.201 2.435 -0.689 C23 65B 20
65B C24 C24 C 0 1 Y N N 142.218 -30.375 72.378 5.868 1.464 0.064 C24 65B 21
65B C25 C25 C 0 1 Y N N 142.015 -30.618 70.975 5.135 0.492 0.750 C25 65B 22
65B C26 C26 C 0 1 Y N N 141.194 -29.755 70.182 3.760 0.496 0.686 C26 65B 23
65B C27 C27 C 0 1 N N N 143.060 -31.290 73.094 7.298 1.466 0.132 C27 65B 24
65B N27 N27 N 0 1 N N N 143.768 -32.046 73.642 8.433 1.467 0.186 N27 65B 25
65B "C4'" "C4'" C 0 1 N N N 142.358 -21.619 74.296 -4.858 4.149 0.103 "C4'" 65B 26
65B "N4'" "N4'" N 0 1 N N N 142.208 -21.156 75.345 -5.368 5.164 0.121 "N4'" 65B 27
65B BR BR BR 0 0 N N N 141.314 -22.940 66.790 -1.281 -3.701 -0.017 BR 65B 28
65B "H2'1" "H2'1" H 0 0 N N N 141.290 -21.088 69.029 -3.881 -0.286 -2.759 "H2'1" 65B 29
65B "H2'2" "H2'2" H 0 0 N N N 142.672 -20.096 69.607 -2.866 1.094 -3.242 "H2'2" 65B 30
65B "H2'3" "H2'3" H 0 0 N N N 142.960 -21.480 68.498 -2.143 -0.282 -2.374 "H2'3" 65B 31
65B H3 H3 H 0 1 N N N 142.160 -20.401 71.925 -4.219 2.725 -2.068 H3 65B 32
65B H5 H5 H 0 1 N N N 142.865 -24.220 73.833 -4.066 2.723 2.220 H5 65B 33
65B "H6'1" "H6'1" H 0 0 N N N 144.318 -25.963 71.674 -1.854 0.628 2.821 "H6'1" 65B 34
65B "H6'2" "H6'2" H 0 0 N N N 142.777 -26.267 72.544 -3.561 0.622 3.323 "H6'2" 65B 35
65B "H6'3" "H6'3" H 0 0 N N N 142.808 -26.259 70.748 -2.899 -0.751 2.404 "H6'3" 65B 36
65B HN5 HN5 H 0 1 N N N 138.846 -28.172 69.734 1.224 2.297 -0.199 HN5 65B 37
65B H181 H181 H 0 0 N N N 138.134 -25.499 66.340 2.745 -3.216 -0.171 H181 65B 38
65B H182 H182 H 0 0 N N N 138.520 -23.927 66.560 1.308 -4.085 -0.121 H182 65B 39
65B H22 H22 H 0 1 N N N 140.283 -27.519 72.707 3.310 3.181 -1.334 H22 65B 40
65B H23 H23 H 0 1 N N N 141.751 -29.062 74.102 5.764 3.188 -1.220 H23 65B 41
65B H25 H25 H 0 1 N N N 142.492 -31.469 70.511 5.647 -0.260 1.333 H25 65B 42
65B H26 H26 H 0 1 N N N 141.058 -29.966 69.131 3.193 -0.253 1.219 H26 65B 43
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
65B C1 O17 SING N N 1
65B C1 C2 SING Y N 2
65B C1 C6 DOUB Y N 3
65B O17 C13 SING N N 4
65B C2 "C2'" SING N N 5
65B C2 C3 DOUB Y N 6
65B "C2'" "H2'1" SING N N 7
65B "C2'" "H2'2" SING N N 8
65B "C2'" "H2'3" SING N N 9
65B C3 C4 SING Y N 10
65B C3 H3 SING N N 11
65B C4 C5 DOUB Y N 12
65B C4 "C4'" SING N N 13
65B C5 C6 SING Y N 14
65B C5 H5 SING N N 15
65B C6 "C6'" SING N N 16
65B "C6'" "H6'1" SING N N 17
65B "C6'" "H6'2" SING N N 18
65B "C6'" "H6'3" SING N N 19
65B C13 N12 SING Y N 20
65B C13 C14 DOUB Y N 21
65B N12 C11 DOUB Y N 22
65B C11 N5 SING N N 23
65B C11 N16 SING Y N 24
65B N5 C21 SING N N 25
65B N5 HN5 SING N N 26
65B N16 C15 DOUB Y N 27
65B C15 N18 SING N N 28
65B C15 C14 SING Y N 29
65B N18 H181 SING N N 30
65B N18 H182 SING N N 31
65B C14 BR SING N N 32
65B C21 C22 SING Y N 33
65B C21 C26 DOUB Y N 34
65B C22 C23 DOUB Y N 35
65B C22 H22 SING N N 36
65B C23 C24 SING Y N 37
65B C23 H23 SING N N 38
65B C24 C25 DOUB Y N 39
65B C24 C27 SING N N 40
65B C25 C26 SING Y N 41
65B C25 H25 SING N N 42
65B C26 H26 SING N N 43
65B C27 N27 TRIP N N 44
65B "C4'" "N4'" TRIP N N 45
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
65B SMILES ACDLabs 12.01 "N#Cc3cc(c(Oc1nc(nc(c1Br)N)Nc2ccc(C#N)cc2)c(c3)C)C"
65B InChI InChI 1.03 "InChI=1S/C20H15BrN6O/c1-11-7-14(10-23)8-12(2)17(11)28-19-16(21)18(24)26-20(27-19)25-15-5-3-13(9-22)4-6-15/h3-8H,1-2H3,(H3,24,25,26,27)"
65B InChIKey InChI 1.03 PYGWGZALEOIKDF-UHFFFAOYSA-N
65B SMILES_CANONICAL CACTVS 3.370 "Cc1cc(cc(C)c1Oc2nc(Nc3ccc(cc3)C#N)nc(N)c2Br)C#N"
65B SMILES CACTVS 3.370 "Cc1cc(cc(C)c1Oc2nc(Nc3ccc(cc3)C#N)nc(N)c2Br)C#N"
65B SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1cc(cc(c1Oc2c(c(nc(n2)Nc3ccc(cc3)C#N)N)Br)C)C#N"
65B SMILES "OpenEye OEToolkits" 1.7.6 "Cc1cc(cc(c1Oc2c(c(nc(n2)Nc3ccc(cc3)C#N)N)Br)C)C#N"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
65B "SYSTEMATIC NAME" ACDLabs 12.01 "4-({6-amino-5-bromo-2-[(4-cyanophenyl)amino]pyrimidin-4-yl}oxy)-3,5-dimethylbenzonitrile"
65B "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "4-[6-azanyl-5-bromanyl-2-[(4-cyanophenyl)amino]pyrimidin-4-yl]oxy-3,5-dimethyl-benzenecarbonitrile"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
65B "Create component" 2004-04-15 RCSB
65B "Modify descriptor" 2011-06-04 RCSB
65B "Modify synonyms" 2012-07-12 RCSB
65B "Modify synonyms" 2020-06-05 PDBE
# #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 65B Etravine ? ?
2 65B Etravirine ? ?
##