data_661 # _chem_comp.id 661 _chem_comp.name ;beta-D-glucopyranosylmethanol 3,4,6,1'-tetrakisphosphate ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H18 O18 P4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(2S,3S,4R,5R,6R)-3-oxidanyl-4,5-diphosphonooxy-6-(phosphonooxymethyl)oxan-2-yl]methyl dihydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-12 _chem_comp.pdbx_modified_date 2024-02-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 514.102 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PPJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 661 C2 C1 C 0 1 N N S N N N 10.517 29.559 85.789 0.191 -2.086 -0.393 C2 661 1 661 C6 C2 C 0 1 N N N N N N 13.371 26.788 84.158 -0.257 2.154 -0.086 C6 661 2 661 C4 C3 C 0 1 N N R N N N 12.496 28.127 86.112 1.250 0.165 -0.220 C4 661 3 661 C3 C4 C 0 1 N N R N N N 11.869 29.454 86.474 1.396 -1.314 0.151 C3 661 4 661 O11 O1 O 0 1 N N N N N N 13.921 25.684 87.489 4.376 2.560 0.423 O11 661 5 661 C01 C5 C 0 1 N N N N N N 9.373 29.297 83.574 -2.306 -2.199 -0.421 C01 661 6 661 O12 O2 O 0 1 N N N N N N 16.073 26.984 87.245 2.638 2.704 -1.402 O12 661 7 661 O04 O3 O 0 1 N N N N N N 8.199 31.103 81.277 -5.096 -3.793 0.240 O04 661 8 661 O08 O4 O 0 1 N N N N N N 11.683 29.528 87.899 2.596 -1.835 -0.423 O08 661 9 661 O03 O5 O 0 1 N N N N N N 7.191 28.805 81.653 -6.079 -1.379 0.587 O03 661 10 661 P4 P1 P 0 1 N N N N N N 14.645 26.987 87.744 3.377 1.750 -0.545 P4 661 11 661 O01 O6 O 0 1 N N N N N N 9.620 29.251 82.164 -3.500 -1.704 0.188 O01 661 12 661 O05 O7 O 0 1 N N N N N N 11.342 30.152 90.331 5.028 -2.831 -0.500 O05 661 13 661 O06 O8 O 0 1 N N N N N N 10.787 31.747 88.448 4.220 -1.489 1.479 O06 661 14 661 O10 O9 O 0 1 N N N N N N 14.517 27.478 89.170 4.227 0.743 -1.471 O10 661 15 661 O02 O10 O 0 1 N N N N N N 8.884 29.163 79.812 -5.179 -2.122 -1.650 O02 661 16 661 P1 P2 P 0 1 N N N N N N 8.387 29.605 81.173 -4.968 -2.247 -0.191 P1 661 17 661 O09 O11 O 0 1 N N N N N N 13.755 27.948 86.783 2.333 0.908 0.345 O09 661 18 661 O07 O12 O 0 1 N N N N N N 13.199 31.204 88.979 3.262 -3.805 1.186 O07 661 19 661 P3 P3 P 0 1 N N N N N N 11.764 30.728 88.997 3.786 -2.469 0.458 P3 661 20 661 C1 C6 C 0 1 N N S N N N 10.694 29.345 84.286 -1.095 -1.471 0.166 C1 661 21 661 C5 C7 C 0 1 N N R N N N 12.670 28.048 84.610 -0.076 0.694 0.332 C5 661 22 661 O2 O13 O 0 1 N N N N N N 9.963 30.843 86.053 0.279 -3.455 0.009 O2 661 23 661 O5 O14 O 0 1 N N N N N N 11.353 28.089 84.024 -1.153 -0.088 -0.189 O5 661 24 661 O6 O15 O 0 1 N N N N N N 13.311 26.723 82.722 -1.436 2.682 0.525 O6 661 25 661 P6 P4 P 0 1 N N N N N N 14.587 27.216 81.841 -1.935 4.197 0.305 P6 661 26 661 O16 O16 O 0 1 N N N N N N 14.811 28.671 82.190 -0.856 5.214 0.933 O16 661 27 661 O17 O17 O 0 1 N N N N N N 14.120 26.996 80.414 -2.078 4.463 -1.143 O17 661 28 661 O18 O18 O 0 1 N N N N N N 15.750 26.321 82.230 -3.356 4.405 1.033 O18 661 29 661 H1 H1 H 0 1 N N N N N N 9.857 28.772 86.183 0.181 -2.027 -1.482 H1 661 30 661 H2 H2 H 0 1 N N N N N N 12.870 25.909 84.591 0.609 2.734 0.235 H2 661 31 661 H3 H3 H 0 1 N N N N N N 14.421 26.810 84.485 -0.352 2.213 -1.170 H3 661 32 661 H4 H4 H 0 1 N N N N N N 11.807 27.327 86.419 1.263 0.271 -1.305 H4 661 33 661 H5 H5 H 0 1 N N N N N N 12.518 30.272 86.128 1.435 -1.416 1.236 H5 661 34 661 H6 H6 H 0 1 N N N N N N 14.505 25.077 87.049 5.034 3.091 -0.046 H6 661 35 661 H7 H7 H 0 1 N N N N N N 8.786 30.195 83.819 -2.216 -3.268 -0.227 H7 661 36 661 H8 H8 H 0 1 N N N N N N 8.817 28.400 83.883 -2.348 -2.027 -1.496 H8 661 37 661 H9 H9 H 0 1 N N N N N N 8.432 31.510 80.451 -4.969 -3.949 1.186 H9 661 38 661 H10 H10 H 0 1 N N N N N N 6.962 28.155 81.000 -6.989 -1.651 0.406 H10 661 39 661 H11 H11 H 0 1 N N N N N N 10.517 30.540 90.597 5.783 -3.218 -0.036 H11 661 40 661 H12 H12 H 0 1 N N N N N N 15.377 27.702 89.506 4.737 0.089 -0.975 H12 661 41 661 H13 H13 H 0 1 N N N N N N 13.238 32.082 88.617 2.960 -4.493 0.576 H13 661 42 661 H14 H14 H 0 1 N N N N N N 11.292 30.174 83.879 -1.103 -1.569 1.251 H14 661 43 661 H15 H15 H 0 1 N N N N N N 13.253 28.918 84.275 -0.070 0.625 1.420 H15 661 44 661 H16 H16 H 0 1 N N N N N N 10.262 31.149 86.901 -0.454 -4.004 -0.301 H16 661 45 661 H17 H17 H 0 1 N N N N N N 14.615 29.212 81.434 -0.711 5.096 1.882 H17 661 46 661 H18 H18 H 0 1 N N N N N N 15.985 25.769 81.494 -3.717 5.297 0.941 H18 661 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 661 O02 P1 DOUB N N 1 661 O17 P6 DOUB N N 2 661 P1 O04 SING N N 3 661 P1 O03 SING N N 4 661 P1 O01 SING N N 5 661 P6 O16 SING N N 6 661 P6 O18 SING N N 7 661 P6 O6 SING N N 8 661 O01 C01 SING N N 9 661 O6 C6 SING N N 10 661 C01 C1 SING N N 11 661 O5 C1 SING N N 12 661 O5 C5 SING N N 13 661 C6 C5 SING N N 14 661 C1 C2 SING N N 15 661 C5 C4 SING N N 16 661 C2 O2 SING N N 17 661 C2 C3 SING N N 18 661 C4 C3 SING N N 19 661 C4 O09 SING N N 20 661 C3 O08 SING N N 21 661 O09 P4 SING N N 22 661 O12 P4 DOUB N N 23 661 O11 P4 SING N N 24 661 P4 O10 SING N N 25 661 O08 P3 SING N N 26 661 O06 P3 DOUB N N 27 661 O07 P3 SING N N 28 661 P3 O05 SING N N 29 661 C2 H1 SING N N 30 661 C6 H2 SING N N 31 661 C6 H3 SING N N 32 661 C4 H4 SING N N 33 661 C3 H5 SING N N 34 661 O11 H6 SING N N 35 661 C01 H7 SING N N 36 661 C01 H8 SING N N 37 661 O04 H9 SING N N 38 661 O03 H10 SING N N 39 661 O05 H11 SING N N 40 661 O10 H12 SING N N 41 661 O07 H13 SING N N 42 661 C1 H14 SING N N 43 661 C5 H15 SING N N 44 661 O2 H16 SING N N 45 661 O16 H17 SING N N 46 661 O18 H18 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 661 InChI InChI 1.06 "InChI=1S/C7H18O18P4/c8-5-3(1-21-26(9,10)11)23-4(2-22-27(12,13)14)6(24-28(15,16)17)7(5)25-29(18,19)20/h3-8H,1-2H2,(H2,9,10,11)(H2,12,13,14)(H2,15,16,17)(H2,18,19,20)/t3-,4+,5-,6+,7+/m0/s1" 661 InChIKey InChI 1.06 MPSXELYGZWCBKU-PJEQPVAWSA-N 661 SMILES_CANONICAL CACTVS 3.385 "O[C@H]1[C@H](CO[P](O)(O)=O)O[C@H](CO[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@@H]1O[P](O)(O)=O" 661 SMILES CACTVS 3.385 "O[CH]1[CH](CO[P](O)(O)=O)O[CH](CO[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]1O[P](O)(O)=O" 661 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)COP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)O)OP(=O)(O)O" 661 SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)COP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)O)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id 661 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S},3~{S},4~{R},5~{R},6~{R})-3-oxidanyl-4,5-diphosphonooxy-6-(phosphonooxymethyl)oxan-2-yl]methyl dihydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 661 _pdbx_chem_comp_synonyms.name "[(2S,3S,4R,5R,6R)-3-oxidanyl-4,5-diphosphonooxy-6-(phosphonooxymethyl)oxan-2-yl]methyl dihydrogen phosphate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 661 "Create component" 2023-07-12 PDBE 661 "Initial release" 2024-02-28 RCSB #