data_67D # _chem_comp.id 67D _chem_comp.name "3-(5-O-{[3-(1H-indol-3-yl)propanoyl]sulfamoyl}-beta-D-ribofuranosyl)-3H-imidazo[2,1-i]purine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H23 N7 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-02-10 _chem_comp.pdbx_modified_date 2016-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 541.536 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 67D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5I2E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 67D S S1 S 0 1 N N N -30.982 3.947 -23.852 -3.101 3.703 0.298 S 67D 1 67D N N1 N 0 1 N N N -31.790 5.074 -23.071 -3.541 2.221 -0.294 N 67D 2 67D C7 C1 C 0 1 Y N N -25.616 4.316 -34.860 6.716 -2.921 0.660 C7 67D 3 67D C6 C2 C 0 1 Y N N -27.427 4.458 -33.764 4.582 -2.396 0.509 C6 67D 4 67D C5 C3 C 0 1 Y N N -28.299 4.691 -32.610 3.460 -1.465 0.393 C5 67D 5 67D C4 C4 C 0 1 Y N N -27.671 5.079 -31.369 3.750 -0.099 0.333 C4 67D 6 67D C3 C5 C 0 1 Y N N -26.695 4.017 -35.691 5.972 -4.046 0.687 C3 67D 7 67D C2 C6 C 0 1 Y N N -25.571 4.952 -32.456 6.022 -0.515 0.483 C2 67D 8 67D C8 C7 C 0 1 Y N N -29.851 4.946 -31.183 1.572 -0.418 0.227 C8 67D 9 67D C9 C8 C 0 1 N N N -31.966 6.213 -23.707 -3.480 1.133 0.500 C9 67D 10 67D C11 C9 C 0 1 N N N -32.255 8.616 -23.805 -3.719 -1.272 1.056 C11 67D 11 67D C10 C10 C 0 1 N N N -31.825 7.472 -22.901 -3.880 -0.216 -0.039 C10 67D 12 67D N1 N2 N 0 1 Y N N -26.110 4.586 -33.646 5.850 -1.865 0.551 N1 67D 13 67D N3 N3 N 0 1 Y N N -26.314 5.183 -31.346 5.024 0.313 0.382 N3 67D 14 67D N7 N4 N 0 1 Y N N -29.635 4.619 -32.495 2.119 -1.597 0.324 N7 67D 15 67D N9 N5 N 0 1 Y N N -28.689 5.223 -30.532 2.540 0.539 0.228 N9 67D 16 67D "C1'" C11 C 0 1 N N R -28.471 5.597 -29.136 2.328 1.986 0.135 "C1'" 67D 17 67D "O4'" O1 O 0 1 N N N -28.781 4.505 -28.320 0.968 2.324 0.482 "O4'" 67D 18 67D "C2'" C12 C 0 1 N N R -29.346 6.728 -28.608 2.456 2.463 -1.334 "C2'" 67D 19 67D "O2'" O2 O 0 1 N N N -28.904 7.995 -29.052 3.819 2.741 -1.663 "O2'" 67D 20 67D "C3'" C13 C 0 1 N N S -29.254 6.497 -27.088 1.614 3.762 -1.328 "C3'" 67D 21 67D "O3'" O3 O 0 1 N N N -28.186 7.267 -26.528 2.458 4.905 -1.181 "O3'" 67D 22 67D "C4'" C14 C 0 1 N N R -28.934 4.996 -26.967 0.694 3.609 -0.101 "C4'" 67D 23 67D "C5'" C15 C 0 1 N N N -29.960 4.174 -26.235 -0.771 3.680 -0.537 "C5'" 67D 24 67D "O5'" O4 O 0 1 N N N -30.000 4.562 -24.859 -1.614 3.638 0.616 "O5'" 67D 25 67D O2P O5 O 0 1 N N N -30.233 3.299 -22.822 -3.242 4.622 -0.776 O2P 67D 26 67D O3P O6 O 0 1 N N N -31.848 3.009 -24.524 -3.771 3.853 1.543 O3P 67D 27 67D N2 N6 N 0 1 Y N N -27.854 4.109 -34.989 4.680 -3.706 0.598 N2 67D 28 67D O13 O7 O 0 1 N N N -32.199 6.250 -24.896 -3.103 1.240 1.647 O13 67D 29 67D C19 C16 C 0 1 Y N N -33.435 9.388 -23.261 -4.120 -2.621 0.518 C19 67D 30 67D C20 C17 C 0 1 Y N N -33.933 9.535 -21.865 -3.267 -3.548 -0.230 C20 67D 31 67D C21 C18 C 0 1 Y N N -35.109 10.424 -21.972 -4.070 -4.667 -0.520 C21 67D 32 67D N22 N7 N 0 1 Y N N -35.260 10.741 -23.271 -5.314 -4.424 0.018 N22 67D 33 67D C23 C19 C 0 1 Y N N -34.300 10.154 -24.037 -5.323 -3.203 0.637 C23 67D 34 67D C36 C20 C 0 1 Y N N -35.803 10.759 -20.819 -3.526 -5.730 -1.232 C36 67D 35 67D C37 C21 C 0 1 Y N N -35.369 10.248 -19.603 -2.213 -5.676 -1.645 C37 67D 36 67D C38 C22 C 0 1 Y N N -34.252 9.419 -19.504 -1.424 -4.571 -1.357 C38 67D 37 67D C39 C23 C 0 1 Y N N -33.523 9.042 -20.626 -1.939 -3.515 -0.659 C39 67D 38 67D H1 H1 H 0 1 N N N -32.144 4.925 -22.148 -3.843 2.135 -1.212 H1 67D 39 67D H2 H2 H 0 1 N N N -24.574 4.328 -35.144 7.793 -2.863 0.718 H2 67D 40 67D H3 H3 H 0 1 N N N -26.620 3.752 -36.735 6.355 -5.053 0.767 H3 67D 41 67D H4 H4 H 0 1 N N N -24.499 5.065 -32.390 7.025 -0.117 0.518 H4 67D 42 67D H5 H5 H 0 1 N N N -30.826 4.980 -30.721 0.511 -0.228 0.155 H5 67D 43 67D H6 H6 H 0 1 N N N -32.529 8.203 -24.787 -2.679 -1.304 1.380 H6 67D 44 67D H7 H7 H 0 1 N N N -31.408 9.308 -23.922 -4.355 -1.016 1.904 H7 67D 45 67D H8 H8 H 0 1 N N N -30.779 7.608 -22.588 -4.921 -0.184 -0.363 H8 67D 46 67D H9 H9 H 0 1 N N N -32.471 7.428 -22.012 -3.244 -0.472 -0.887 H9 67D 47 67D H10 H10 H 0 1 N N N -27.417 5.882 -29.000 3.033 2.517 0.774 H10 67D 48 67D H11 H11 H 0 1 N N N -30.384 6.552 -28.927 2.034 1.729 -2.020 H11 67D 49 67D H12 H12 H 0 1 N N N -29.474 8.670 -28.702 3.950 3.043 -2.572 H12 67D 50 67D H13 H13 H 0 1 N N N -30.218 6.722 -26.609 1.023 3.838 -2.241 H13 67D 51 67D H14 H14 H 0 1 N N N -28.142 7.114 -25.591 3.098 5.016 -1.897 H14 67D 52 67D H15 H15 H 0 1 N N N -27.974 4.898 -26.440 0.906 4.397 0.622 H15 67D 53 67D H16 H16 H 0 1 N N N -30.949 4.336 -26.689 -0.944 4.610 -1.080 H16 67D 54 67D H17 H17 H 0 1 N N N -29.693 3.109 -26.307 -0.999 2.834 -1.185 H17 67D 55 67D H18 H18 H 0 1 N N N -35.984 11.332 -23.628 -6.070 -5.029 -0.031 H18 67D 56 67D H19 H19 H 0 1 N N N -34.220 10.268 -25.108 -6.174 -2.770 1.140 H19 67D 57 67D H20 H20 H 0 1 N N N -36.666 11.406 -20.866 -4.131 -6.595 -1.461 H20 67D 58 67D H21 H21 H 0 1 N N N -35.914 10.501 -18.705 -1.792 -6.503 -2.199 H21 67D 59 67D H22 H22 H 0 1 N N N -33.946 9.061 -18.532 -0.397 -4.545 -1.688 H22 67D 60 67D H23 H23 H 0 1 N N N -32.667 8.389 -20.541 -1.320 -2.658 -0.439 H23 67D 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 67D C3 N2 SING Y N 1 67D C3 C7 DOUB Y N 2 67D N2 C6 DOUB Y N 3 67D C7 N1 SING Y N 4 67D C6 N1 SING Y N 5 67D C6 C5 SING Y N 6 67D N1 C2 SING Y N 7 67D C5 N7 SING Y N 8 67D C5 C4 DOUB Y N 9 67D N7 C8 DOUB Y N 10 67D C2 N3 DOUB Y N 11 67D C4 N3 SING Y N 12 67D C4 N9 SING Y N 13 67D C8 N9 SING Y N 14 67D N9 "C1'" SING N N 15 67D "C1'" "C2'" SING N N 16 67D "C1'" "O4'" SING N N 17 67D "O2'" "C2'" SING N N 18 67D "C2'" "C3'" SING N N 19 67D "O4'" "C4'" SING N N 20 67D "C3'" "C4'" SING N N 21 67D "C3'" "O3'" SING N N 22 67D "C4'" "C5'" SING N N 23 67D "C5'" "O5'" SING N N 24 67D O13 C9 DOUB N N 25 67D "O5'" S SING N N 26 67D O3P S DOUB N N 27 67D C23 N22 SING Y N 28 67D C23 C19 DOUB Y N 29 67D S N SING N N 30 67D S O2P DOUB N N 31 67D C11 C19 SING N N 32 67D C11 C10 SING N N 33 67D C9 N SING N N 34 67D C9 C10 SING N N 35 67D N22 C21 SING Y N 36 67D C19 C20 SING Y N 37 67D C21 C20 DOUB Y N 38 67D C21 C36 SING Y N 39 67D C20 C39 SING Y N 40 67D C36 C37 DOUB Y N 41 67D C39 C38 DOUB Y N 42 67D C37 C38 SING Y N 43 67D N H1 SING N N 44 67D C7 H2 SING N N 45 67D C3 H3 SING N N 46 67D C2 H4 SING N N 47 67D C8 H5 SING N N 48 67D C11 H6 SING N N 49 67D C11 H7 SING N N 50 67D C10 H8 SING N N 51 67D C10 H9 SING N N 52 67D "C1'" H10 SING N N 53 67D "C2'" H11 SING N N 54 67D "O2'" H12 SING N N 55 67D "C3'" H13 SING N N 56 67D "O3'" H14 SING N N 57 67D "C4'" H15 SING N N 58 67D "C5'" H16 SING N N 59 67D "C5'" H17 SING N N 60 67D N22 H18 SING N N 61 67D C23 H19 SING N N 62 67D C36 H20 SING N N 63 67D C37 H21 SING N N 64 67D C38 H22 SING N N 65 67D C39 H23 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 67D SMILES ACDLabs 12.01 "S(NC(CCc2c1ccccc1nc2)=O)(=O)(OCC6OC(n5c4c(c3n(ccn3)cn4)nc5)C(C6O)O)=O" 67D InChI InChI 1.03 "InChI=1S/C23H23N7O7S/c31-17(6-5-13-9-25-15-4-2-1-3-14(13)15)28-38(34,35)36-10-16-19(32)20(33)23(37-16)30-12-26-18-21-24-7-8-29(21)11-27-22(18)30/h1-4,7-9,11-12,16,19-20,23,25,32-33H,5-6,10H2,(H,28,31)/t16-,19-,20-,23-/m1/s1" 67D InChIKey InChI 1.03 QPCNFYXTDYZQFI-UGTJMOTHSA-N 67D SMILES_CANONICAL CACTVS 3.385 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[S](=O)(=O)NC(=O)CCc2c[nH]c3ccccc23)n4cnc5c6nccn6cnc45" 67D SMILES CACTVS 3.385 "O[CH]1[CH](O)[CH](O[CH]1CO[S](=O)(=O)NC(=O)CCc2c[nH]c3ccccc23)n4cnc5c6nccn6cnc45" 67D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1ccc2c(c1)c(c[nH]2)CCC(=O)NS(=O)(=O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncn6c5ncc6)O)O" 67D SMILES "OpenEye OEToolkits" 2.0.4 "c1ccc2c(c1)c(c[nH]2)CCC(=O)NS(=O)(=O)OCC3C(C(C(O3)n4cnc5c4ncn6c5ncc6)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 67D "SYSTEMATIC NAME" ACDLabs 12.01 "3-(5-O-{[3-(1H-indol-3-yl)propanoyl]sulfamoyl}-beta-D-ribofuranosyl)-3H-imidazo[2,1-i]purine" 67D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(2~{R},3~{S},4~{R},5~{R})-5-imidazo[2,1-f]purin-3-yl-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[3-(1~{H}-indol-3-yl)propanoyl]sulfamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 67D "Create component" 2016-02-10 RCSB 67D "Initial release" 2016-06-22 RCSB #