data_68X # _chem_comp.id 68X _chem_comp.name "(2~{Z},9~{E})-~{N}-[(2~{R},3~{S},4~{R},5~{S},6~{S})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]hexadeca-2,9-dienamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H39 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-12 _chem_comp.pdbx_modified_date 2024-05-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 413.548 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 68X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8HW8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 68X C4 C1 C 0 1 N N S N N N 13.754 -2.565 24.819 -7.254 0.073 -0.492 C4 68X 1 68X C5 C2 C 0 1 N N S N N N 13.476 -1.358 25.735 -6.873 1.343 0.273 C5 68X 2 68X C6 C3 C 0 1 N N N N N N 12.768 -1.774 27.027 -7.705 2.519 -0.242 C6 68X 3 68X O6 O1 O 0 1 N N N N N N 12.888 -0.721 27.948 -7.433 3.677 0.549 O6 68X 4 68X C2 C4 C 0 1 N N S N N N 12.212 -1.432 23.070 -4.903 -0.711 -0.207 C2 68X 5 68X N2 N1 N 0 1 N N N N N N 13.044 -0.834 22.047 -4.052 -1.782 0.316 N2 68X 6 68X C01 C5 C 0 1 N N N N N N 11.588 -0.674 19.653 -1.947 -3.019 0.363 C01 68X 7 68X C1 C6 C 0 1 N N R N N N 11.835 -0.450 24.181 -4.612 0.589 0.547 C1 68X 8 68X O01 O2 O 0 1 N N N N N N 11.538 0.788 23.576 -4.827 0.387 1.945 O01 68X 9 68X C02 C7 C 0 1 N N N N N N 10.285 -0.822 19.826 -0.672 -3.095 -0.006 C02 68X 10 68X C03 C8 C 0 1 N N N N N N 9.576 -0.983 21.162 -0.019 -1.930 -0.704 C03 68X 11 68X C3 C9 C 0 1 N N R N N N 12.859 -2.718 23.588 -6.376 -1.087 -0.013 C3 68X 12 68X O03 O3 O 0 1 N N N N N N 13.649 -3.229 22.552 -6.626 -1.336 1.372 O03 68X 13 68X C04 C10 C 0 1 N N N N N N 8.895 -2.340 21.212 1.305 -1.597 -0.013 C04 68X 14 68X O4 O4 O 0 1 N N N N N N 13.654 -3.756 25.561 -7.051 0.280 -1.891 O4 68X 15 68X C05 C11 C 0 1 N N N N N N 9.839 -3.384 21.781 1.968 -0.415 -0.722 C05 68X 16 68X O5 O5 O 0 1 N N N N N N 12.847 -0.248 25.128 -5.484 1.618 0.075 O5 68X 17 68X C06 C12 C 0 1 N N N N N N 10.445 -4.031 20.544 3.292 -0.082 -0.030 C06 68X 18 68X C07 C13 C 0 1 N N N N N N 11.872 -4.555 20.605 3.954 1.100 -0.739 C07 68X 19 68X C7 C14 C 0 1 N N N N N N 12.781 -0.537 20.627 -2.802 -1.944 -0.162 C7 68X 20 68X O7 O6 O 0 1 N N N N N N 13.685 -0.058 20.102 -2.381 -1.201 -1.028 O7 68X 21 68X C08 C15 C 0 1 N N N N N N 12.645 -3.908 19.453 5.258 1.428 -0.058 C08 68X 22 68X C09 C16 C 0 1 N N N N N N 12.813 -4.578 18.325 6.368 1.466 -0.752 C09 68X 23 68X C10 C17 C 0 1 N N N N N N 13.580 -4.007 17.129 7.672 1.793 -0.071 C10 68X 24 68X C11 C18 C 0 1 N N N N N N 14.178 -2.635 17.421 8.685 0.679 -0.345 C11 68X 25 68X C12 C19 C 0 1 N N N N N N 15.632 -2.715 17.909 10.008 1.012 0.346 C12 68X 26 68X C13 C20 C 0 1 N N N N N N 15.712 -2.193 19.348 11.021 -0.102 0.072 C13 68X 27 68X C14 C21 C 0 1 N N N N N N 15.853 -3.316 20.379 12.345 0.231 0.763 C14 68X 28 68X C15 C22 C 0 1 N N N N N N 17.240 -3.287 21.021 13.357 -0.883 0.489 C15 68X 29 68X H1 H1 H 0 1 N N N N N N 14.788 -2.462 24.457 -8.303 -0.162 -0.307 H1 68X 30 68X H2 H2 H 0 1 N N N N N N 14.470 -1.012 26.055 -7.066 1.198 1.336 H2 68X 31 68X H3 H3 H 0 1 N N N N N N 11.705 -1.972 26.823 -7.445 2.720 -1.281 H3 68X 32 68X H4 H4 H 0 1 N N N N N N 13.238 -2.681 27.434 -8.764 2.272 -0.173 H4 68X 33 68X H5 H5 H 0 1 N N N N N N 12.454 -0.958 28.759 -7.927 4.463 0.279 H5 68X 34 68X H6 H6 H 0 1 N N N N N N 11.269 -1.732 22.590 -4.701 -0.569 -1.269 H6 68X 35 68X H7 H7 H 0 1 N N N N N N 13.959 -0.577 22.359 -4.387 -2.375 1.007 H7 68X 36 68X H8 H8 H 0 1 N N N N N N 11.880 -0.642 18.614 -2.355 -3.747 1.049 H8 68X 37 68X H9 H9 H 0 1 N N N N N N 10.935 -0.837 24.681 -3.577 0.884 0.377 H9 68X 38 68X H10 H10 H 0 1 N N N N N N 11.300 1.419 24.245 -4.661 1.171 2.486 H10 68X 39 68X H11 H11 H 0 1 N N N N N N 9.669 -0.829 18.939 -0.104 -3.991 0.195 H11 68X 40 68X H12 H12 H 0 1 N N N N N N 10.310 -0.911 21.978 0.171 -2.190 -1.746 H12 68X 41 68X H13 H13 H 0 1 N N N N N N 8.822 -0.190 21.275 -0.679 -1.064 -0.661 H13 68X 42 68X H14 H14 H 0 1 N N N N N N 12.057 -3.430 23.834 -6.604 -1.981 -0.593 H14 68X 43 68X H15 H15 H 0 1 N N N N N N 14.068 -4.032 22.839 -7.541 -1.580 1.568 H15 68X 44 68X H16 H16 H 0 1 N N N N N N 8.001 -2.274 21.849 1.115 -1.337 1.029 H16 68X 45 68X H17 H17 H 0 1 N N N N N N 8.599 -2.635 20.194 1.965 -2.464 -0.056 H17 68X 46 68X H18 H18 H 0 1 N N N N N N 14.200 -3.694 26.336 -7.574 1.004 -2.262 H18 68X 47 68X H19 H19 H 0 1 N N N N N N 9.290 -4.124 22.382 2.157 -0.675 -1.763 H19 68X 48 68X H20 H20 H 0 1 N N N N N N 10.618 -2.914 22.400 1.308 0.451 -0.678 H20 68X 49 68X H21 H21 H 0 1 N N N N N N 10.412 -3.281 19.740 3.102 0.178 1.011 H21 68X 50 68X H22 H22 H 0 1 N N N N N N 9.801 -4.882 20.278 3.952 -0.948 -0.074 H22 68X 51 68X H23 H23 H 0 1 N N N N N N 11.876 -5.649 20.493 4.144 0.840 -1.780 H23 68X 52 68X H24 H24 H 0 1 N N N N N N 12.332 -4.283 21.566 3.294 1.967 -0.696 H24 68X 53 68X H25 H25 H 0 1 N N N N N N 13.050 -2.913 19.560 5.277 1.632 1.003 H25 68X 54 68X H26 H26 H 0 1 N N N N N N 12.392 -5.569 18.244 6.349 1.262 -1.813 H26 68X 55 68X H27 H27 H 0 1 N N N N N N 12.890 -3.917 16.277 8.057 2.737 -0.457 H27 68X 56 68X H28 H28 H 0 1 N N N N N N 14.395 -4.699 16.869 7.509 1.879 1.003 H28 68X 57 68X H29 H29 H 0 1 N N N N N N 14.148 -2.035 16.500 8.300 -0.265 0.041 H29 68X 58 68X H30 H30 H 0 1 N N N N N N 13.572 -2.145 18.198 8.848 0.593 -1.420 H30 68X 59 68X H31 H31 H 0 1 N N N N N N 15.973 -3.760 17.878 10.393 1.956 -0.040 H31 68X 60 68X H32 H32 H 0 1 N N N N N N 16.272 -2.101 17.259 9.845 1.098 1.421 H32 68X 61 68X H33 H33 H 0 1 N N N N N N 16.583 -1.527 19.432 10.636 -1.046 0.458 H33 68X 62 68X H34 H34 H 0 1 N N N N N N 14.795 -1.627 19.568 11.184 -0.188 -1.002 H34 68X 63 68X H35 H35 H 0 1 N N N N N N 15.090 -3.187 21.161 12.729 1.175 0.377 H35 68X 64 68X H36 H36 H 0 1 N N N N N N 15.706 -4.285 19.880 12.182 0.317 1.838 H36 68X 65 68X H37 H37 H 0 1 N N N N N N 17.321 -4.100 21.757 12.973 -1.827 0.875 H37 68X 66 68X H38 H38 H 0 1 N N N N N N 18.007 -3.419 20.243 13.520 -0.969 -0.585 H38 68X 67 68X H39 H39 H 0 1 N N N N N N 17.391 -2.321 21.524 14.300 -0.646 0.982 H39 68X 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 68X C10 C11 SING N N 1 68X C10 C09 SING N N 2 68X C11 C12 SING N N 3 68X C12 C13 SING N N 4 68X C09 C08 DOUB N E 5 68X C13 C14 SING N N 6 68X C08 C07 SING N N 7 68X C01 C02 DOUB N Z 8 68X C01 C7 SING N N 9 68X C02 C03 SING N N 10 68X O7 C7 DOUB N N 11 68X C14 C15 SING N N 12 68X C06 C07 SING N N 13 68X C06 C05 SING N N 14 68X C7 N2 SING N N 15 68X C03 C04 SING N N 16 68X C04 C05 SING N N 17 68X N2 C2 SING N N 18 68X O03 C3 SING N N 19 68X C2 C3 SING N N 20 68X C2 C1 SING N N 21 68X O01 C1 SING N N 22 68X C3 C4 SING N N 23 68X C1 O5 SING N N 24 68X C4 O4 SING N N 25 68X C4 C5 SING N N 26 68X O5 C5 SING N N 27 68X C5 C6 SING N N 28 68X C6 O6 SING N N 29 68X C4 H1 SING N N 30 68X C5 H2 SING N N 31 68X C6 H3 SING N N 32 68X C6 H4 SING N N 33 68X O6 H5 SING N N 34 68X C2 H6 SING N N 35 68X N2 H7 SING N N 36 68X C01 H8 SING N N 37 68X C1 H9 SING N N 38 68X O01 H10 SING N N 39 68X C02 H11 SING N N 40 68X C03 H12 SING N N 41 68X C03 H13 SING N N 42 68X C3 H14 SING N N 43 68X O03 H15 SING N N 44 68X C04 H16 SING N N 45 68X C04 H17 SING N N 46 68X O4 H18 SING N N 47 68X C05 H19 SING N N 48 68X C05 H20 SING N N 49 68X C06 H21 SING N N 50 68X C06 H22 SING N N 51 68X C07 H23 SING N N 52 68X C07 H24 SING N N 53 68X C08 H25 SING N N 54 68X C09 H26 SING N N 55 68X C10 H27 SING N N 56 68X C10 H28 SING N N 57 68X C11 H29 SING N N 58 68X C11 H30 SING N N 59 68X C12 H31 SING N N 60 68X C12 H32 SING N N 61 68X C13 H33 SING N N 62 68X C13 H34 SING N N 63 68X C14 H35 SING N N 64 68X C14 H36 SING N N 65 68X C15 H37 SING N N 66 68X C15 H38 SING N N 67 68X C15 H39 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 68X InChI InChI 1.06 "InChI=1S/C22H39NO6/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-18(25)23-19-21(27)20(26)17(16-24)29-22(19)28/h7-8,14-15,17,19-22,24,26-28H,2-6,9-13,16H2,1H3,(H,23,25)/b8-7+,15-14-/t17-,19-,20+,21+,22+/m0/s1" 68X InChIKey InChI 1.06 BQDHAOHXPSOCQH-OQVMBZPUSA-N 68X SMILES_CANONICAL CACTVS 3.385 "CCCCCC\C=C\CCCCC\C=C/C(=O)N[C@@H]1[C@H](O)O[C@@H](CO)[C@@H](O)[C@@H]1O" 68X SMILES CACTVS 3.385 "CCCCCCC=CCCCCCC=CC(=O)N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O" 68X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCC/C=C/CCCCC/C=C\C(=O)N[C@H]1[C@H]([C@@H]([C@@H](O[C@H]1O)CO)O)O" 68X SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCC=CCCCCCC=CC(=O)NC1C(C(C(OC1O)CO)O)O" # _pdbx_chem_comp_identifier.comp_id 68X _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{Z},9~{E})-~{N}-[(2~{R},3~{S},4~{R},5~{S},6~{S})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]hexadeca-2,9-dienamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 68X "Create component" 2023-01-12 PDBC 68X "Initial release" 2024-06-05 RCSB #