data_68Z # _chem_comp.id 68Z _chem_comp.name "1R,2S,4R)-4-[2-azanyl-6,8-bis(oxidanylidene)-1,7-dihydropurin-9-yl]-2-oxidanyl-cyclopentyl]methyl dihydrogen phosphate" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H16 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-12-15 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 361.248 _chem_comp.one_letter_code G _chem_comp.three_letter_code 68Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4CIS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 68Z P P P 0 1 N N N -11.455 -13.843 26.543 -5.539 0.153 -0.400 P 68Z 1 68Z O1P O1P O 0 1 N N N -11.015 -12.439 26.457 -6.635 -0.652 0.461 O1P 68Z 2 68Z O2P O2P O 0 1 N N N -12.528 -14.099 27.511 -5.567 1.584 -0.021 O2P 68Z 3 68Z "O5'" "O5'" O 0 1 N N N -12.022 -14.282 25.121 -4.076 -0.452 -0.106 "O5'" 68Z 4 68Z "C5'" "C5'" C 0 1 N N N -11.179 -14.343 23.986 -2.878 0.115 -0.639 "C5'" 68Z 5 68Z "C4'" "C4'" C 0 1 N N R -11.950 -14.757 22.749 -1.673 -0.700 -0.165 "C4'" 68Z 6 68Z "C3'" "C3'" C 0 1 N N S -12.490 -16.164 22.831 -1.494 -0.562 1.361 "C3'" 68Z 7 68Z "C2'" "C2'" C 0 1 N N N -11.484 -17.095 22.213 0.022 -0.510 1.623 "C2'" 68Z 8 68Z "C1'" "C1'" C 0 1 N N R -10.769 -16.216 21.215 0.711 -0.619 0.247 "C1'" 68Z 9 68Z "C6'" "C6'" C 0 1 N N N -11.022 -14.763 21.552 -0.362 -0.124 -0.755 "C6'" 68Z 10 68Z N9 N9 N 0 1 N N N -9.342 -16.531 21.218 1.895 0.242 0.197 N9 68Z 11 68Z C4 C4 C 0 1 N N N -8.354 -15.961 21.892 3.185 -0.179 -0.054 C4 68Z 12 68Z N3 N3 N 0 1 N N N -8.316 -14.964 22.797 3.730 -1.375 -0.308 N3 68Z 13 68Z C2 C2 C 0 1 N N N -7.151 -14.583 23.350 5.022 -1.501 -0.518 C2 68Z 14 68Z N2 N2 N 0 1 N N N -7.128 -13.578 24.250 5.538 -2.746 -0.775 N2 68Z 15 68Z N1 N1 N 0 1 N N N -6.007 -15.189 23.010 5.860 -0.429 -0.487 N1 68Z 16 68Z C6 C6 C 0 1 N N N -5.994 -16.187 22.116 5.372 0.806 -0.235 C6 68Z 17 68Z O6 O6 O 0 1 N N N -4.926 -16.730 21.829 6.113 1.776 -0.205 O6 68Z 18 68Z C5 C5 C 0 1 N N N -7.175 -16.606 21.531 3.995 0.949 -0.011 C5 68Z 19 68Z N7 N7 N 0 1 N N N -7.460 -17.558 20.627 3.164 2.037 0.268 N7 68Z 20 68Z C8 C8 C 0 1 N N N -8.775 -17.455 20.487 1.903 1.575 0.383 C8 68Z 21 68Z O8 O8 O 0 1 N N N -9.468 -18.183 19.708 0.924 2.258 0.620 O8 68Z 22 68Z "O3'" "O3'" O 0 1 N N N -13.786 -16.208 22.134 -2.067 -1.690 2.025 "O3'" 68Z 23 68Z O3P O3P O 0 1 N Y N -10.077 -14.612 26.683 -5.874 0.007 -1.968 O3P 68Z 24 68Z H1P H1P H 0 1 N N N -11.518 -11.911 27.066 -7.542 -0.340 0.333 H1P 68Z 25 68Z H3P H3P H 0 1 N N N -10.112 -15.192 27.435 -5.873 -0.906 -2.287 H3P 68Z 26 68Z "H5'1" "H5'1" H 0 0 N N N -10.735 -13.351 23.816 -2.921 0.100 -1.728 "H5'1" 68Z 27 68Z "H5'2" "H5'2" H 0 0 N N N -10.380 -15.076 24.172 -2.778 1.144 -0.294 "H5'2" 68Z 28 68Z "H4'" "H4'" H 0 1 N N N -12.776 -14.052 22.574 -1.790 -1.748 -0.442 "H4'" 68Z 29 68Z "H3'A" "H3'A" H 0 0 N N N -12.630 -16.434 23.888 -1.964 0.357 1.710 "H3'A" 68Z 30 68Z "H6'1" "H6'1" H 0 0 N N N -11.496 -14.252 20.701 -0.176 -0.527 -1.751 "H6'1" 68Z 31 68Z "H6'2" "H6'2" H 0 0 N N N -10.076 -14.260 21.801 -0.395 0.965 -0.779 "H6'2" 68Z 32 68Z "H2'1" "H2'1" H 0 0 N N N -10.786 -17.481 22.971 0.286 0.434 2.099 "H2'1" 68Z 33 68Z "H2'2" "H2'2" H 0 0 N N N -11.982 -17.937 21.711 0.320 -1.346 2.256 "H2'2" 68Z 34 68Z "H3'" "H3'" H 0 1 N N N -14.139 -17.089 22.177 -1.986 -1.662 2.988 "H3'" 68Z 35 68Z "H1'" "H1'" H 0 1 N N N -11.180 -16.418 20.215 0.981 -1.654 0.036 "H1'" 68Z 36 68Z H21N H21N H 0 0 N N N -7.977 -13.116 24.506 4.953 -3.518 -0.800 H21N 68Z 37 68Z H22N H22N H 0 0 N N N -6.262 -13.295 24.661 6.490 -2.853 -0.931 H22N 68Z 38 68Z H1 H1 H 0 1 N N N -5.149 -14.892 23.430 6.809 -0.551 -0.645 H1 68Z 39 68Z H7 H7 H 0 1 N N N -6.834 -18.190 20.171 3.445 2.961 0.360 H7 68Z 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 68Z P O1P SING N N 1 68Z P O2P DOUB N N 2 68Z P "O5'" SING N N 3 68Z P O3P SING N N 4 68Z "O5'" "C5'" SING N N 5 68Z "C5'" "C4'" SING N N 6 68Z "C4'" "C3'" SING N N 7 68Z "C4'" "C6'" SING N N 8 68Z "C3'" "C2'" SING N N 9 68Z "C3'" "O3'" SING N N 10 68Z "C2'" "C1'" SING N N 11 68Z "C1'" "C6'" SING N N 12 68Z "C1'" N9 SING N N 13 68Z N9 C4 SING N N 14 68Z N9 C8 SING N N 15 68Z C4 N3 SING N N 16 68Z C4 C5 DOUB N N 17 68Z N3 C2 DOUB N N 18 68Z C2 N2 SING N N 19 68Z C2 N1 SING N N 20 68Z N1 C6 SING N N 21 68Z C6 O6 DOUB N N 22 68Z C6 C5 SING N N 23 68Z C5 N7 SING N N 24 68Z N7 C8 SING N N 25 68Z C8 O8 DOUB N N 26 68Z O1P H1P SING N N 27 68Z O3P H3P SING N N 28 68Z "C5'" "H5'1" SING N N 29 68Z "C5'" "H5'2" SING N N 30 68Z "C4'" "H4'" SING N N 31 68Z "C3'" "H3'A" SING N N 32 68Z "C6'" "H6'1" SING N N 33 68Z "C6'" "H6'2" SING N N 34 68Z "C2'" "H2'1" SING N N 35 68Z "C2'" "H2'2" SING N N 36 68Z "O3'" "H3'" SING N N 37 68Z "C1'" "H1'" SING N N 38 68Z N2 H21N SING N N 39 68Z N2 H22N SING N N 40 68Z N1 H1 SING N N 41 68Z N7 H7 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 68Z SMILES ACDLabs 12.01 "O=P(O)(O)OCC3CC(N2C=1N=C(NC(=O)C=1NC2=O)N)CC3O" 68Z InChI InChI 1.03 "InChI=1S/C11H16N5O7P/c12-10-14-8-7(9(18)15-10)13-11(19)16(8)5-1-4(6(17)2-5)3-23-24(20,21)22/h4-6,17H,1-3H2,(H,13,19)(H2,20,21,22)(H3,12,14,15,18)/t4-,5-,6+/m1/s1" 68Z InChIKey InChI 1.03 BSPDUIDJPVHVQJ-PBXRRBTRSA-N 68Z SMILES_CANONICAL CACTVS 3.385 "NC1=NC2=C(NC(=O)N2[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)C3)C(=O)N1" 68Z SMILES CACTVS 3.385 "NC1=NC2=C(NC(=O)N2[CH]3C[CH](O)[CH](CO[P](O)(O)=O)C3)C(=O)N1" 68Z SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C1[C@H](C[C@@H]([C@H]1COP(=O)(O)O)O)N2C3=C(C(=O)NC(=N3)N)NC2=O" 68Z SMILES "OpenEye OEToolkits" 1.9.2 "C1C(CC(C1COP(=O)(O)O)O)N2C3=C(C(=O)NC(=N3)N)NC2=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 68Z "SYSTEMATIC NAME" ACDLabs 12.01 "[(1R,2S,4R)-4-(2-amino-6,8-dioxo-1,6,7,8-tetrahydro-9H-purin-9-yl)-2-hydroxycyclopentyl]methyl dihydrogen phosphate" 68Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(1R,2S,4R)-4-[2-azanyl-6,8-bis(oxidanylidene)-1,7-dihydropurin-9-yl]-2-oxidanyl-cyclopentyl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 68Z "Create component" 2013-12-15 EBI 68Z "Modify linking type" 2014-01-02 EBI 68Z "Modify parent residue" 2014-01-02 EBI 68Z "Modify one letter code" 2014-01-02 EBI 68Z "Initial release" 2014-06-04 RCSB 68Z "Modify descriptor" 2014-09-05 RCSB #