data_693 # _chem_comp.id 693 _chem_comp.name "2-(5-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}-2'-FLUORO-6-OXIDO-1,1'-BIPHENYL-3-YL)SUCCINATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H17 F N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms CRA_17693 _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2003-03-14 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 460.414 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 693 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1O30 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 693 C1 C1 C 0 1 Y N N 43.979 -3.132 26.009 5.900 0.127 0.017 C1 693 1 693 C2 C2 C 0 1 Y N N 44.166 -1.715 25.988 5.777 1.239 -0.825 C2 693 2 693 C3 C3 C 0 1 Y N N 44.026 -0.921 27.125 4.544 1.717 -1.164 C3 693 3 693 C4 C4 C 0 1 Y N N 43.696 -1.569 28.290 3.398 1.102 -0.675 C4 693 4 693 C5 C5 C 0 1 Y N N 43.508 -2.893 28.369 3.503 -0.017 0.172 C5 693 5 693 C6 C6 C 0 1 Y N N 43.637 -3.722 27.260 4.765 -0.506 0.512 C6 693 6 693 C7 C7 C 0 1 N N N 44.143 -3.881 24.829 7.242 -0.381 0.376 C7 693 7 693 N1 N1 N 0 1 N N N 43.829 -5.162 24.809 7.361 -1.439 1.177 N1 693 8 693 N2 N2 N 1 1 N N N 44.619 -3.272 23.754 8.331 0.220 -0.101 N2 693 9 693 N3 N3 N 0 1 Y N N 43.508 -1.099 29.471 2.048 1.342 -0.830 N3 693 10 693 N4 N4 N 0 1 Y N N 43.193 -3.287 29.591 2.241 -0.400 0.488 N4 693 11 693 C8 C8 C 0 1 Y N N 43.215 -2.120 30.209 1.381 0.396 -0.099 C8 693 12 693 "C1'" "C1'" C 0 1 Y N N 42.999 -1.984 31.601 -0.089 0.289 0.012 "C1'" 693 13 693 "C2'" "C2'" C 0 1 Y N N 42.679 -3.093 32.396 -0.703 -0.965 0.007 "C2'" 693 14 693 "C3'" "C3'" C 0 1 Y N N 42.455 -3.014 33.778 -2.075 -1.066 0.111 "C3'" 693 15 693 CVX "C31'" C 0 1 N N R 42.081 -4.306 34.559 -2.729 -2.423 0.105 CVX 693 16 693 CWX "C32'" C 0 1 N N N 40.576 -4.484 34.251 -2.212 -3.235 1.264 CWX 693 17 693 OXX "O33'" O 0 1 N N N 40.254 -5.317 33.419 -1.389 -2.756 2.026 OXX 693 18 693 OYX "O34'" O -1 1 N N N 39.788 -3.772 34.842 -2.617 -4.372 1.441 OYX 693 19 693 C6X "C42'" C 0 1 N N N 42.382 -4.210 36.126 -2.401 -3.141 -1.206 C6X 693 20 693 C7X "C43'" C 0 1 N N N 43.111 -5.440 36.776 -3.153 -4.445 -1.267 C7X 693 21 693 O8X "O44'" O 0 1 N N N 42.980 -6.555 36.293 -3.917 -4.786 -0.304 O8X 693 22 693 O9X "O45'" O -1 1 N N N 43.797 -5.222 37.774 -3.026 -5.209 -2.280 O9X 693 23 693 "C4'" "C4'" C 0 1 Y N N 42.566 -1.772 34.374 -2.853 0.071 0.221 "C4'" 693 24 693 "C5'" "C5'" C 0 1 Y N N 42.888 -0.619 33.655 -2.259 1.330 0.228 "C5'" 693 25 693 "C6'" "C6'" C 0 1 Y N N 43.093 -0.729 32.271 -0.870 1.444 0.129 "C6'" 693 26 693 "O6'" "O6'" O -1 1 N N N 43.360 0.441 31.578 -0.282 2.667 0.135 "O6'" 693 27 693 C1B "C1''" C 0 1 Y N N 43.041 0.586 34.341 -3.097 2.548 0.346 C1B 693 28 693 C2B "C2''" C 0 1 Y N N 44.277 1.260 34.335 -3.156 3.463 -0.706 C2B 693 29 693 C3B "C3''" C 0 1 Y N N 44.449 2.428 35.045 -3.945 4.593 -0.591 C3B 693 30 693 C4B "C4''" C 0 1 Y N N 43.399 2.967 35.781 -4.664 4.822 0.568 C4B 693 31 693 C5B "C5''" C 0 1 Y N N 42.174 2.332 35.796 -4.604 3.920 1.615 C5B 693 32 693 C6B "C6''" C 0 1 Y N N 41.999 1.156 35.086 -3.825 2.786 1.511 C6B 693 33 693 F2B "F2''" F 0 1 N N N 45.369 0.773 33.592 -2.453 3.240 -1.838 F2B 693 34 693 HC2 HC2 H 0 1 N N N 44.425 -1.226 25.068 6.664 1.722 -1.208 HC2 693 35 693 HC3 HC3 H 0 1 N N N 44.162 0.149 27.094 4.460 2.576 -1.814 HC3 693 36 693 HC6 HC6 H 0 1 N N N 43.479 -4.785 27.350 4.859 -1.367 1.157 HC6 693 37 693 HH11 HH11 H 0 0 N N N 43.493 -5.566 25.673 8.241 -1.771 1.413 HH11 693 38 693 HH12 HH12 H 0 0 N N N 43.896 -5.789 24.038 6.568 -1.876 1.524 HH12 693 39 693 HH21 HH21 H 0 0 N N N 44.900 -2.305 23.798 8.244 0.991 -0.684 HH21 693 40 693 HH22 HH22 H 0 0 N N N 44.772 -3.735 22.888 9.211 -0.110 0.138 HH22 693 41 693 HN3 HN3 H 0 1 N N N 43.556 -0.163 29.795 1.647 2.049 -1.359 HN3 693 42 693 "HC2'" "HC2'" H 0 0 N N N 42.599 -4.058 31.918 -0.102 -1.858 -0.079 "HC2'" 693 43 693 H31B H31B H 0 0 N N N 42.632 -5.133 34.134 -3.809 -2.307 0.195 H31B 693 44 693 H42A H42A H 0 0 N N N 43.017 -3.358 36.303 -2.695 -2.513 -2.048 H42A 693 45 693 H42B H42B H 0 0 N N N 41.468 -4.040 36.673 -1.330 -3.336 -1.256 H42B 693 46 693 "HC4'" "HC4'" H 0 0 N N N 42.396 -1.679 35.435 -3.927 -0.017 0.302 "HC4'" 693 47 693 H3B "H3''" H 0 1 N N N 45.407 2.922 35.029 -3.996 5.300 -1.406 H3B 693 48 693 H4B "H4''" H 0 1 N N N 43.539 3.882 36.337 -5.275 5.708 0.655 H4B 693 49 693 H5B "H5''" H 0 1 N N N 41.352 2.746 36.360 -5.169 4.105 2.517 H5B 693 50 693 H6B "H6''" H 0 1 N N N 41.031 0.677 35.113 -3.780 2.083 2.330 H6B 693 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 693 C1 C2 DOUB Y N 1 693 C1 C6 SING Y N 2 693 C1 C7 SING N N 3 693 C2 C3 SING Y N 4 693 C2 HC2 SING N N 5 693 C3 C4 DOUB Y N 6 693 C3 HC3 SING N N 7 693 C4 C5 SING Y N 8 693 C4 N3 SING Y N 9 693 C5 C6 DOUB Y N 10 693 C5 N4 SING Y N 11 693 C6 HC6 SING N N 12 693 C7 N1 SING N N 13 693 C7 N2 DOUB N N 14 693 N1 HH11 SING N N 15 693 N1 HH12 SING N N 16 693 N2 HH21 SING N N 17 693 N2 HH22 SING N N 18 693 N3 C8 SING Y N 19 693 N3 HN3 SING N N 20 693 N4 C8 DOUB Y N 21 693 C8 "C1'" SING Y N 22 693 "C1'" "C2'" DOUB Y N 23 693 "C1'" "C6'" SING Y N 24 693 "C2'" "C3'" SING Y N 25 693 "C2'" "HC2'" SING N N 26 693 "C3'" CVX SING N N 27 693 "C3'" "C4'" DOUB Y N 28 693 CVX CWX SING N N 29 693 CVX C6X SING N N 30 693 CVX H31B SING N N 31 693 CWX OXX DOUB N N 32 693 CWX OYX SING N N 33 693 C6X C7X SING N N 34 693 C6X H42A SING N N 35 693 C6X H42B SING N N 36 693 C7X O8X DOUB N N 37 693 C7X O9X SING N N 38 693 "C4'" "C5'" SING Y N 39 693 "C4'" "HC4'" SING N N 40 693 "C5'" "C6'" DOUB Y N 41 693 "C5'" C1B SING Y N 42 693 "C6'" "O6'" SING N N 43 693 C1B C2B DOUB Y N 44 693 C1B C6B SING Y N 45 693 C2B C3B SING Y N 46 693 C2B F2B SING N N 47 693 C3B C4B DOUB Y N 48 693 C3B H3B SING N N 49 693 C4B C5B SING Y N 50 693 C4B H4B SING N N 51 693 C5B C6B DOUB Y N 52 693 C5B H5B SING N N 53 693 C6B H6B SING N N 54 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 693 SMILES ACDLabs 10.04 "[O-]C(=O)CC(C([O-])=O)c4cc(c2nc1cc(ccc1n2)\C(=[NH2+])N)c([O-])c(c3ccccc3F)c4" 693 SMILES_CANONICAL CACTVS 3.341 "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cc(cc(c3[O-])c4ccccc4F)[C@@H](CC([O-])=O)C([O-])=O" 693 SMILES CACTVS 3.341 "NC(=[NH2+])c1ccc2[nH]c(nc2c1)c3cc(cc(c3[O-])c4ccccc4F)[CH](CC([O-])=O)C([O-])=O" 693 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(c(c1)c2cc(cc(c2[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N)[C@@H](CC(=O)[O-])C(=O)[O-])F" 693 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(c(c1)c2cc(cc(c2[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N)C(CC(=O)[O-])C(=O)[O-])F" 693 InChI InChI 1.03 "InChI=1S/C24H19FN4O5/c25-17-4-2-1-3-13(17)15-7-12(14(24(33)34)10-20(30)31)8-16(21(15)32)23-28-18-6-5-11(22(26)27)9-19(18)29-23/h1-9,14,32H,10H2,(H3,26,27)(H,28,29)(H,30,31)(H,33,34)/p-2/t14-/m1/s1" 693 InChIKey InChI 1.03 XCOFROALSAFROV-CQSZACIVSA-L # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 693 "SYSTEMATIC NAME" ACDLabs 10.04 "(2R)-2-(5-{5-[amino(iminio)methyl]-1H-benzimidazol-2-yl}-2'-fluoro-6-oxidobiphenyl-3-yl)butanedioate" 693 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-[3-[5-(amino-azaniumylidene-methyl)-1H-benzimidazol-2-yl]-5-(2-fluorophenyl)-4-oxido-phenyl]butanedioate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 693 "Create component" 2003-03-14 RCSB 693 "Modify aromatic_flag" 2011-06-04 RCSB 693 "Modify descriptor" 2011-06-04 RCSB 693 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 693 _pdbx_chem_comp_synonyms.name CRA_17693 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##