data_6A4 # _chem_comp.id 6A4 _chem_comp.name "(4S)-2-sulfanylidene-4-[(tetradecanoyloxy)methyl]-1,3,2lambda~5~-dioxaphospholane-2-thiolate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H32 O4 P S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2016-02-25 _chem_comp.pdbx_modified_date 2016-05-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 395.537 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6A4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5ID9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6A4 S4 S1 S 0 1 N N N 28.781 14.140 80.606 -8.068 -1.596 -1.656 S4 6A4 1 6A4 P1 P1 P 0 1 N N N 29.346 12.932 82.045 -7.322 -0.537 -0.143 P1 6A4 2 6A4 O1 O1 O 0 1 N N N 30.394 13.419 83.156 -5.696 -0.415 -0.263 O1 6A4 3 6A4 S5 S2 S -1 1 N N N 30.113 11.283 81.352 -7.848 -1.335 1.605 S5 6A4 4 6A4 O2 O2 O 0 1 N N N 28.095 12.660 83.019 -7.792 1.020 -0.236 O2 6A4 5 6A4 C2 C1 C 0 1 N N N 28.480 12.825 84.382 -6.613 1.780 0.079 C2 6A4 6 6A4 C1 C2 C 0 1 N N S 30.004 12.658 84.308 -5.458 0.834 0.432 C1 6A4 7 6A4 C3 C3 C 0 1 N N N 30.665 12.975 85.625 -4.130 1.439 -0.028 C3 6A4 8 6A4 O3 O3 O 0 1 N N N 30.303 11.908 86.516 -3.035 0.587 0.400 O3 6A4 9 6A4 C4 C4 C 0 1 N N N 31.210 10.798 86.764 -1.794 0.979 0.074 C4 6A4 10 6A4 O18 O4 O 0 1 N N N 31.793 10.282 85.825 -1.627 2.002 -0.548 O18 6A4 11 6A4 C5 C5 C 0 1 N N N 31.430 10.305 88.168 -0.608 0.145 0.484 C5 6A4 12 6A4 C6 C6 C 0 1 N N N 31.538 11.485 89.129 0.679 0.811 -0.008 C6 6A4 13 6A4 C7 C7 C 0 1 N N N 32.984 11.894 89.414 1.883 -0.036 0.408 C7 6A4 14 6A4 C8 C8 C 0 1 N N N 32.998 13.280 90.070 3.170 0.630 -0.084 C8 6A4 15 6A4 C9 C9 C 0 1 N N N 34.396 13.874 90.181 4.374 -0.217 0.332 C9 6A4 16 6A4 C10 C10 C 0 1 N N N 34.356 15.400 90.233 5.661 0.449 -0.160 C10 6A4 17 6A4 C11 C11 C 0 1 N N N 35.760 15.972 90.443 6.865 -0.398 0.256 C11 6A4 18 6A4 C12 C12 C 0 1 N N N 35.969 16.480 91.873 8.151 0.268 -0.236 C12 6A4 19 6A4 C13 C13 C 0 1 N N N 37.444 16.492 92.308 9.356 -0.579 0.180 C13 6A4 20 6A4 C14 C14 C 0 1 N N N 38.116 17.849 92.081 10.642 0.087 -0.312 C14 6A4 21 6A4 C15 C15 C 0 1 N N N 37.655 18.920 93.083 11.846 -0.760 0.104 C15 6A4 22 6A4 C16 C16 C 0 1 N N N 38.373 20.254 92.835 13.133 -0.094 -0.389 C16 6A4 23 6A4 C17 C17 C 0 1 N N N 37.622 21.457 93.384 14.337 -0.941 0.028 C17 6A4 24 6A4 H3 H3 H 0 1 N N N 28.205 13.822 84.757 -6.333 2.387 -0.783 H3 6A4 25 6A4 H4 H4 H 0 1 N N N 28.024 12.055 85.022 -6.818 2.431 0.928 H4 6A4 26 6A4 H5 H5 H 0 1 N N N 30.198 11.596 84.096 -5.436 0.661 1.508 H5 6A4 27 6A4 H6 H6 H 0 1 N N N 31.757 13.018 85.504 -4.124 1.520 -1.115 H6 6A4 28 6A4 H7 H7 H 0 1 N N N 30.301 13.938 86.014 -4.011 2.430 0.411 H7 6A4 29 6A4 H8 H8 H 0 1 N N N 30.584 9.669 88.467 -0.581 0.061 1.570 H8 6A4 30 6A4 H9 H9 H 0 1 N N N 32.360 9.719 88.206 -0.693 -0.849 0.045 H9 6A4 31 6A4 H10 H10 H 0 1 N N N 31.011 12.345 88.689 0.652 0.895 -1.095 H10 6A4 32 6A4 H11 H11 H 0 1 N N N 31.058 11.208 90.079 0.765 1.805 0.431 H11 6A4 33 6A4 H12 H12 H 0 1 N N N 33.446 11.162 90.092 1.910 -0.120 1.494 H12 6A4 34 6A4 H13 H13 H 0 1 N N N 33.549 11.928 88.471 1.798 -1.030 -0.031 H13 6A4 35 6A4 H14 H14 H 0 1 N N N 32.376 13.959 89.468 3.143 0.714 -1.171 H14 6A4 36 6A4 H15 H15 H 0 1 N N N 32.573 13.193 91.081 3.255 1.624 0.355 H15 6A4 37 6A4 H16 H16 H 0 1 N N N 34.872 13.498 91.099 4.401 -0.301 1.418 H16 6A4 38 6A4 H17 H17 H 0 1 N N N 34.987 13.562 89.307 4.288 -1.211 -0.107 H17 6A4 39 6A4 H18 H18 H 0 1 N N N 33.948 15.783 89.286 5.633 0.533 -1.247 H18 6A4 40 6A4 H19 H19 H 0 1 N N N 33.709 15.716 91.065 5.746 1.443 0.279 H19 6A4 41 6A4 H20 H20 H 0 1 N N N 36.499 15.184 90.235 6.892 -0.482 1.342 H20 6A4 42 6A4 H21 H21 H 0 1 N N N 35.910 16.808 89.744 6.779 -1.392 -0.184 H21 6A4 43 6A4 H22 H22 H 0 1 N N N 35.578 17.506 91.939 8.124 0.352 -1.323 H22 6A4 44 6A4 H23 H23 H 0 1 N N N 35.408 15.829 92.560 8.237 1.262 0.203 H23 6A4 45 6A4 H24 H24 H 0 1 N N N 37.497 16.248 93.379 9.382 -0.663 1.266 H24 6A4 46 6A4 H25 H25 H 0 1 N N N 37.987 15.729 91.731 9.270 -1.573 -0.259 H25 6A4 47 6A4 H26 H26 H 0 1 N N N 39.204 17.722 92.179 10.615 0.171 -1.399 H26 6A4 48 6A4 H27 H27 H 0 1 N N N 37.877 18.193 91.064 10.728 1.081 0.127 H27 6A4 49 6A4 H28 H28 H 0 1 N N N 36.571 19.070 92.975 11.873 -0.844 1.190 H28 6A4 50 6A4 H29 H29 H 0 1 N N N 37.878 18.576 94.104 11.761 -1.754 -0.336 H29 6A4 51 6A4 H30 H30 H 0 1 N N N 39.362 20.212 93.315 13.106 -0.010 -1.475 H30 6A4 52 6A4 H31 H31 H 0 1 N N N 38.497 20.386 91.750 13.218 0.900 0.051 H31 6A4 53 6A4 H32 H32 H 0 1 N N N 38.192 22.374 93.171 14.364 -1.025 1.114 H32 6A4 54 6A4 H33 H33 H 0 1 N N N 36.633 21.521 92.907 14.251 -1.935 -0.412 H33 6A4 55 6A4 H34 H34 H 0 1 N N N 37.498 21.347 94.471 15.253 -0.466 -0.323 H34 6A4 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6A4 S4 P1 DOUB N N 1 6A4 S5 P1 SING N N 2 6A4 P1 O2 SING N N 3 6A4 P1 O1 SING N N 4 6A4 O2 C2 SING N N 5 6A4 O1 C1 SING N N 6 6A4 C1 C2 SING N N 7 6A4 C1 C3 SING N N 8 6A4 C3 O3 SING N N 9 6A4 O18 C4 DOUB N N 10 6A4 O3 C4 SING N N 11 6A4 C4 C5 SING N N 12 6A4 C5 C6 SING N N 13 6A4 C6 C7 SING N N 14 6A4 C7 C8 SING N N 15 6A4 C8 C9 SING N N 16 6A4 C9 C10 SING N N 17 6A4 C10 C11 SING N N 18 6A4 C11 C12 SING N N 19 6A4 C12 C13 SING N N 20 6A4 C14 C13 SING N N 21 6A4 C14 C15 SING N N 22 6A4 C16 C15 SING N N 23 6A4 C16 C17 SING N N 24 6A4 C2 H3 SING N N 25 6A4 C2 H4 SING N N 26 6A4 C1 H5 SING N N 27 6A4 C3 H6 SING N N 28 6A4 C3 H7 SING N N 29 6A4 C5 H8 SING N N 30 6A4 C5 H9 SING N N 31 6A4 C6 H10 SING N N 32 6A4 C6 H11 SING N N 33 6A4 C7 H12 SING N N 34 6A4 C7 H13 SING N N 35 6A4 C8 H14 SING N N 36 6A4 C8 H15 SING N N 37 6A4 C9 H16 SING N N 38 6A4 C9 H17 SING N N 39 6A4 C10 H18 SING N N 40 6A4 C10 H19 SING N N 41 6A4 C11 H20 SING N N 42 6A4 C11 H21 SING N N 43 6A4 C12 H22 SING N N 44 6A4 C12 H23 SING N N 45 6A4 C13 H24 SING N N 46 6A4 C13 H25 SING N N 47 6A4 C14 H26 SING N N 48 6A4 C14 H27 SING N N 49 6A4 C15 H28 SING N N 50 6A4 C15 H29 SING N N 51 6A4 C16 H30 SING N N 52 6A4 C16 H31 SING N N 53 6A4 C17 H32 SING N N 54 6A4 C17 H33 SING N N 55 6A4 C17 H34 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6A4 SMILES ACDLabs 12.01 "S=P1(OCC(O1)COC(CCCCCCCCCCCCC)=O)[S-]" 6A4 InChI InChI 1.03 "InChI=1S/C17H33O4PS2/c1-2-3-4-5-6-7-8-9-10-11-12-13-17(18)19-14-16-15-20-22(23,24)21-16/h16H,2-15H2,1H3,(H,23,24)/p-1/t16-/m0/s1" 6A4 InChIKey InChI 1.03 PXJKEDDZAWQNJX-INIZCTEOSA-M 6A4 SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCC(=O)OC[C@H]1CO[P]([S-])(=S)O1" 6A4 SMILES CACTVS 3.385 "CCCCCCCCCCCCCC(=O)OC[CH]1CO[P]([S-])(=S)O1" 6A4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CCCCCCCCCCCCCC(=O)OC[C@H]1COP(=S)(O1)[S-]" 6A4 SMILES "OpenEye OEToolkits" 2.0.4 "CCCCCCCCCCCCCC(=O)OCC1COP(=S)(O1)[S-]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6A4 "SYSTEMATIC NAME" ACDLabs 12.01 "(4S)-2-sulfanylidene-4-[(tetradecanoyloxy)methyl]-1,3,2lambda~5~-dioxaphospholane-2-thiolate" 6A4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(4~{S})-2-sulfanidyl-2-sulfanylidene-1,3,2$l^{5}-dioxaphospholan-4-yl]methyl tetradecanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6A4 "Create component" 2016-02-25 EBI 6A4 "Modify charge" 2016-03-08 EBI 6A4 "Initial release" 2016-05-11 RCSB #