data_6A9 # _chem_comp.id 6A9 _chem_comp.name ; N-9'-methoxynonyl-1-deoxynojirimycin ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H33 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-02-25 _chem_comp.pdbx_modified_date 2016-07-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 319.437 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6A9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5IEG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6A9 C10 C1 C 0 1 N N N -3.676 14.001 9.123 4.581 -0.274 0.273 C10 6A9 1 6A9 C12 C2 C 0 1 N N N -4.951 15.700 7.719 7.073 -0.422 0.380 C12 6A9 2 6A9 C14 C3 C 0 1 N N N -6.285 19.122 8.154 10.764 -0.083 -0.020 C14 6A9 3 6A9 C15 C4 C 0 1 N N N 4.074 14.605 7.972 -3.005 -1.230 -0.401 C15 6A9 4 6A9 O3 O1 O 0 1 N N N 4.665 10.636 9.304 -3.691 2.631 1.199 O3 6A9 5 6A9 C4 C5 C 0 1 N N N 3.766 10.797 8.197 -3.759 2.457 -0.218 C4 6A9 6 6A9 C3 C6 C 0 1 N N R 3.921 12.177 7.562 -3.990 0.980 -0.540 C3 6A9 7 6A9 C2 C7 C 0 1 N N R 5.255 12.229 6.767 -5.261 0.497 0.162 C2 6A9 8 6A9 O2 O2 O 0 1 N N N 5.237 11.246 5.734 -6.380 1.251 -0.308 O2 6A9 9 6A9 C1 C8 C 0 1 N N R 5.504 13.616 6.179 -5.477 -0.987 -0.147 C1 6A9 10 6A9 O1 O3 O 0 1 N N N 6.760 13.639 5.496 -6.631 -1.457 0.551 O1 6A9 11 6A9 N N1 N 0 1 N N N 3.866 13.270 8.566 -2.842 0.192 -0.073 N 6A9 12 6A9 C C9 C 0 1 N N S 5.427 14.673 7.274 -4.247 -1.778 0.305 C 6A9 13 6A9 O O4 O 0 1 N N N 5.671 16.001 6.811 -4.417 -3.157 -0.030 O 6A9 14 6A9 C5 C10 C 0 1 N N N 2.686 13.263 9.464 -1.584 0.718 -0.621 C5 6A9 15 6A9 C6 C11 C 0 1 N N N 1.305 13.303 8.800 -0.402 0.022 0.058 C6 6A9 16 6A9 C7 C12 C 0 1 N N N 0.150 13.324 9.795 0.908 0.570 -0.513 C7 6A9 17 6A9 C8 C13 C 0 1 N N N -1.146 13.679 9.078 2.089 -0.126 0.165 C8 6A9 18 6A9 C9 C14 C 0 1 N N N -2.418 13.661 9.919 3.399 0.421 -0.405 C9 6A9 19 6A9 C11 C15 C 0 1 N N N -3.874 15.473 8.773 5.891 0.273 -0.298 C11 6A9 20 6A9 C13 C16 C 0 1 N N N -5.946 16.798 8.032 8.383 0.125 -0.190 C13 6A9 21 6A9 O4 O5 O 0 1 N N N -5.338 18.067 8.108 9.487 -0.524 0.443 O4 6A9 22 6A9 H1 H1 H 0 1 N N N -4.545 13.677 9.714 4.546 -0.087 1.346 H1 6A9 23 6A9 H2 H2 H 0 1 N N N -3.641 13.434 8.181 4.525 -1.347 0.089 H2 6A9 24 6A9 H3 H3 H 0 1 N N N -5.510 14.760 7.597 7.038 -0.235 1.453 H3 6A9 25 6A9 H4 H4 H 0 1 N N N -4.451 15.955 6.773 7.017 -1.495 0.197 H4 6A9 26 6A9 H5 H5 H 0 1 N N N -5.758 20.086 8.212 10.849 -0.275 -1.090 H5 6A9 27 6A9 H6 H6 H 0 1 N N N -6.905 19.098 7.246 10.870 0.985 0.167 H6 6A9 28 6A9 H7 H7 H 0 1 N N N -6.926 19.000 9.039 11.549 -0.624 0.509 H7 6A9 29 6A9 H8 H8 H 0 1 N N N 4.038 15.365 8.767 -3.120 -1.343 -1.479 H8 6A9 30 6A9 H9 H9 H 0 1 N N N 3.278 14.803 7.239 -2.126 -1.782 -0.070 H9 6A9 31 6A9 H10 H10 H 0 1 N N N 4.551 9.772 9.682 -3.546 3.546 1.477 H10 6A9 32 6A9 H11 H11 H 0 1 N N N 2.732 10.679 8.553 -4.582 3.049 -0.618 H11 6A9 33 6A9 H12 H12 H 0 1 N N N 3.984 10.027 7.442 -2.822 2.786 -0.669 H12 6A9 34 6A9 H13 H13 H 0 1 N N N 3.098 12.317 6.846 -4.100 0.856 -1.617 H13 6A9 35 6A9 H14 H14 H 0 1 N N N 6.072 12.005 7.469 -5.156 0.633 1.238 H14 6A9 36 6A9 H15 H15 H 0 1 N N N 5.081 10.389 6.114 -7.222 0.998 0.095 H15 6A9 37 6A9 H16 H16 H 0 1 N N N 4.701 13.822 5.457 -5.620 -1.118 -1.220 H16 6A9 38 6A9 H17 H17 H 0 1 N N N 6.908 14.504 5.133 -6.828 -2.392 0.401 H17 6A9 39 6A9 H19 H19 H 0 1 N N N 6.192 14.421 8.023 -4.127 -1.678 1.384 H19 6A9 40 6A9 H20 H20 H 0 1 N N N 5.608 16.607 7.540 -3.674 -3.719 0.228 H20 6A9 41 6A9 H21 H21 H 0 1 N N N 2.736 12.347 10.070 -1.549 0.530 -1.694 H21 6A9 42 6A9 H22 H22 H 0 1 N N N 2.764 14.142 10.121 -1.528 1.791 -0.437 H22 6A9 43 6A9 H23 H23 H 0 1 N N N 1.244 14.208 8.178 -0.438 0.209 1.131 H23 6A9 44 6A9 H24 H24 H 0 1 N N N 1.199 12.412 8.163 -0.458 -1.051 -0.126 H24 6A9 45 6A9 H25 H25 H 0 1 N N N 0.050 12.332 10.259 0.943 0.382 -1.586 H25 6A9 46 6A9 H26 H26 H 0 1 N N N 0.353 14.074 10.574 0.963 1.643 -0.330 H26 6A9 47 6A9 H27 H27 H 0 1 N N N -1.033 14.693 8.666 2.054 0.061 1.238 H27 6A9 48 6A9 H28 H28 H 0 1 N N N -1.280 12.961 8.255 2.034 -1.199 -0.018 H28 6A9 49 6A9 H29 H29 H 0 1 N N N -2.538 12.655 10.348 3.455 1.494 -0.222 H29 6A9 50 6A9 H30 H30 H 0 1 N N N -2.310 14.395 10.731 3.434 0.234 -1.479 H30 6A9 51 6A9 H31 H31 H 0 1 N N N -2.923 15.873 8.392 5.926 0.086 -1.371 H31 6A9 52 6A9 H32 H32 H 0 1 N N N -4.160 16.014 9.687 5.947 1.346 -0.115 H32 6A9 53 6A9 H33 H33 H 0 1 N N N -6.710 16.819 7.241 8.418 -0.062 -1.264 H33 6A9 54 6A9 H34 H34 H 0 1 N N N -6.424 16.577 8.998 8.439 1.198 -0.007 H34 6A9 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6A9 O1 C1 SING N N 1 6A9 O2 C2 SING N N 2 6A9 C1 C2 SING N N 3 6A9 C1 C SING N N 4 6A9 C2 C3 SING N N 5 6A9 O C SING N N 6 6A9 C C15 SING N N 7 6A9 C3 C4 SING N N 8 6A9 C3 N SING N N 9 6A9 C12 C13 SING N N 10 6A9 C12 C11 SING N N 11 6A9 C15 N SING N N 12 6A9 C13 O4 SING N N 13 6A9 O4 C14 SING N N 14 6A9 C4 O3 SING N N 15 6A9 N C5 SING N N 16 6A9 C11 C10 SING N N 17 6A9 C6 C5 SING N N 18 6A9 C6 C7 SING N N 19 6A9 C8 C7 SING N N 20 6A9 C8 C9 SING N N 21 6A9 C10 C9 SING N N 22 6A9 C10 H1 SING N N 23 6A9 C10 H2 SING N N 24 6A9 C12 H3 SING N N 25 6A9 C12 H4 SING N N 26 6A9 C14 H5 SING N N 27 6A9 C14 H6 SING N N 28 6A9 C14 H7 SING N N 29 6A9 C15 H8 SING N N 30 6A9 C15 H9 SING N N 31 6A9 O3 H10 SING N N 32 6A9 C4 H11 SING N N 33 6A9 C4 H12 SING N N 34 6A9 C3 H13 SING N N 35 6A9 C2 H14 SING N N 36 6A9 O2 H15 SING N N 37 6A9 C1 H16 SING N N 38 6A9 O1 H17 SING N N 39 6A9 C H19 SING N N 40 6A9 O H20 SING N N 41 6A9 C5 H21 SING N N 42 6A9 C5 H22 SING N N 43 6A9 C6 H23 SING N N 44 6A9 C6 H24 SING N N 45 6A9 C7 H25 SING N N 46 6A9 C7 H26 SING N N 47 6A9 C8 H27 SING N N 48 6A9 C8 H28 SING N N 49 6A9 C9 H29 SING N N 50 6A9 C9 H30 SING N N 51 6A9 C11 H31 SING N N 52 6A9 C11 H32 SING N N 53 6A9 C13 H33 SING N N 54 6A9 C13 H34 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6A9 SMILES ACDLabs 12.01 "C(CCCCCN1CC(C(C(C1CO)O)O)O)CCCOC" 6A9 InChI InChI 1.03 "InChI=1S/C16H33NO5/c1-22-10-8-6-4-2-3-5-7-9-17-11-14(19)16(21)15(20)13(17)12-18/h13-16,18-21H,2-12H2,1H3/t13-,14+,15-,16-/m1/s1" 6A9 InChIKey InChI 1.03 TYTARGBBJQKLAJ-QKPAOTATSA-N 6A9 SMILES_CANONICAL CACTVS 3.385 "COCCCCCCCCCN1C[C@H](O)[C@@H](O)[C@H](O)[C@H]1CO" 6A9 SMILES CACTVS 3.385 "COCCCCCCCCCN1C[CH](O)[CH](O)[CH](O)[CH]1CO" 6A9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "COCCCCCCCCCN1C[C@@H]([C@H]([C@@H]([C@H]1CO)O)O)O" 6A9 SMILES "OpenEye OEToolkits" 2.0.4 "COCCCCCCCCCN1CC(C(C(C1CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6A9 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-(9-methoxynonyl)piperidine-3,4,5-triol" 6A9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-(9-methoxynonyl)piperidine-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6A9 "Create component" 2016-02-25 EBI 6A9 "Initial release" 2016-07-27 RCSB #