data_6BI # _chem_comp.id 6BI _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-[6-(ethylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H28 Cl N6 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-26 _chem_comp.pdbx_modified_date 2022-05-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 522.877 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6BI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7P8P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6BI N N1 N 0 1 Y N N -0.849 -15.312 6.622 -3.082 -0.922 -0.228 N 6BI 1 6BI C C1 C 0 1 N N R -3.100 -14.307 7.125 -4.950 -1.978 1.015 C 6BI 2 6BI O O1 O 0 1 N N N -3.776 -14.088 5.891 -4.626 -3.368 1.074 O 6BI 3 6BI C1 C2 C 0 1 N N S -3.475 -13.206 8.127 -6.483 -1.770 0.946 C1 6BI 4 6BI C10 C3 C 0 1 N N N 3.371 -20.401 4.313 3.946 -0.165 -0.082 C10 6BI 5 6BI C17 C4 C 0 1 Y N N 1.579 -15.050 4.059 -0.547 -3.458 -0.849 C17 6BI 6 6BI C2 C5 C 0 1 N N R -2.194 -13.000 8.943 -6.664 -0.633 -0.078 C2 6BI 7 6BI C3 C6 C 0 1 N N N -2.252 -13.465 10.376 -7.398 0.541 0.573 C3 6BI 8 6BI C4 C7 C 0 1 N N R -1.592 -14.105 6.974 -4.478 -1.355 -0.324 C4 6BI 9 6BI C5 C8 C 0 1 Y N N -0.938 -16.518 7.265 -2.646 0.333 0.078 C5 6BI 10 6BI C6 C9 C 0 1 Y N N 0.151 -15.460 5.691 -1.973 -1.707 -0.422 C6 6BI 11 6BI C7 C10 C 0 1 Y N N 0.624 -16.752 5.848 -0.864 -0.866 -0.226 C7 6BI 12 6BI C8 C11 C 0 1 Y N N 1.678 -17.147 4.999 0.420 -1.419 -0.365 C8 6BI 13 6BI C9 C12 C 0 1 N N N 3.205 -18.903 4.133 2.880 -1.234 -0.333 C9 6BI 14 6BI N1 N2 N 0 1 Y N N -0.077 -17.412 6.846 -1.345 0.364 0.076 N1 6BI 15 6BI N2 N3 N 0 1 N N N 2.227 -18.373 5.068 1.549 -0.640 -0.184 N2 6BI 16 6BI N4 N4 N 0 1 Y N N 2.144 -16.262 4.099 0.525 -2.707 -0.675 N4 6BI 17 6BI N5 N5 N 0 1 Y N N 0.587 -14.557 4.809 -1.769 -2.983 -0.733 N5 6BI 18 6BI O1 O2 O 0 1 N N N -3.855 -12.004 7.466 -7.129 -2.961 0.491 O1 6BI 19 6BI O11 O3 O 0 1 N N N -3.722 -11.904 13.495 -9.941 2.602 0.366 O11 6BI 20 6BI O12 O4 O 0 1 N N N -1.136 -13.694 8.246 -5.352 -0.219 -0.494 O12 6BI 21 6BI O2 O5 O 0 1 N N N -3.076 -12.553 11.133 -7.665 1.541 -0.412 O2 6BI 22 6BI O3 O6 O 0 1 N N N -3.449 -14.331 12.833 -8.436 3.858 -1.387 O3 6BI 23 6BI O4 O7 O 0 1 N N N -5.439 -13.037 12.040 -7.725 3.617 1.023 O4 6BI 24 6BI P P1 P 0 1 N N N -3.905 -12.923 12.449 -8.427 2.920 -0.078 P 6BI 25 6BI H1 H1 H 0 1 N N N -3.316 -15.300 7.546 -4.523 -1.444 1.864 H1 6BI 26 6BI H2 H2 H 0 1 N N N -4.709 -14.220 6.013 -4.979 -3.822 1.851 H2 6BI 27 6BI H3 H3 H 0 1 N N N -4.278 -13.567 8.787 -6.871 -1.472 1.920 H3 6BI 28 6BI H4 H4 H 0 1 N N N 4.227 -20.992 3.956 3.827 0.644 -0.802 H4 6BI 29 6BI H5 H5 H 0 1 N N N 2.686 -21.052 4.875 3.835 0.228 0.929 H5 6BI 30 6BI H7 H7 H 0 1 N N N 1.980 -14.375 3.317 -0.416 -4.500 -1.100 H7 6BI 31 6BI H8 H8 H 0 1 N N N -1.969 -11.923 8.945 -7.231 -0.994 -0.936 H8 6BI 32 6BI H9 H9 H 0 1 N N N -2.685 -14.475 10.419 -8.338 0.191 0.999 H9 6BI 33 6BI H10 H10 H 0 1 N N N -1.237 -13.483 10.799 -6.777 0.965 1.362 H10 6BI 34 6BI H11 H11 H 0 1 N N N -1.409 -13.321 6.225 -4.603 -2.065 -1.142 H11 6BI 35 6BI H12 H12 H 0 1 N N N -1.655 -16.715 8.048 -3.286 1.176 0.289 H12 6BI 36 6BI H13 H13 H 0 1 N N N 4.173 -18.410 4.307 2.991 -1.627 -1.344 H13 6BI 37 6BI H14 H14 H 0 1 N N N 2.869 -18.699 3.106 3.000 -2.043 0.387 H14 6BI 38 6BI H15 H15 H 0 1 N N N 1.458 -19.011 5.039 1.460 0.299 0.042 H15 6BI 39 6BI H16 H16 H 0 1 N N N -4.080 -11.345 8.112 -6.998 -3.724 1.070 H16 6BI 40 6BI H17 H17 H 0 1 N N N -4.563 -11.520 13.714 -10.461 2.145 -0.309 H17 6BI 41 6BI H18 H18 H 0 1 N N N -4.175 -14.936 12.740 -8.880 4.708 -1.258 H18 6BI 42 6BI C11 C13 C 0 1 N N N ? ? ? 5.336 -0.785 -0.238 C11 6BI 43 6BI C12 C14 C 0 1 N N N ? ? ? 6.403 0.283 0.014 C12 6BI 44 6BI C13 C15 C 0 1 N N N ? ? ? 7.793 -0.337 -0.142 C13 6BI 45 6BI C14 C16 C 0 1 N N N ? ? ? 8.858 0.731 0.109 C14 6BI 46 6BI N3 N6 N 0 1 N N N ? ? ? 10.189 0.138 -0.040 N3 6BI 47 6BI C15 C17 C 0 1 N N N ? ? ? 11.289 0.896 0.136 C15 6BI 48 6BI C16 C18 C 0 1 N N N ? ? ? 12.659 0.285 -0.017 C16 6BI 49 6BI O5 O8 O 0 1 N N N ? ? ? 11.177 2.070 0.419 O5 6BI 50 6BI CL1 CL1 CL 0 0 N N N ? ? ? 13.915 1.544 0.279 CL1 6BI 51 6BI H6 H6 H 0 1 N N N ? ? ? 5.456 -1.595 0.483 H6 6BI 52 6BI H19 H19 H 0 1 N N N ? ? ? 5.448 -1.179 -1.248 H19 6BI 53 6BI H20 H20 H 0 1 N N N ? ? ? 6.283 1.092 -0.707 H20 6BI 54 6BI H21 H21 H 0 1 N N N ? ? ? 6.291 0.677 1.024 H21 6BI 55 6BI H22 H22 H 0 1 N N N ? ? ? 7.912 -1.146 0.578 H22 6BI 56 6BI H23 H23 H 0 1 N N N ? ? ? 7.904 -0.731 -1.153 H23 6BI 57 6BI H24 H24 H 0 1 N N N ? ? ? 8.739 1.541 -0.611 H24 6BI 58 6BI H25 H25 H 0 1 N N N ? ? ? 8.748 1.125 1.119 H25 6BI 59 6BI H26 H26 H 0 1 N N N ? ? ? 10.279 -0.801 -0.266 H26 6BI 60 6BI H27 H27 H 0 1 N N N ? ? ? 12.778 -0.524 0.703 H27 6BI 61 6BI H29 H29 H 0 1 N N N ? ? ? 12.770 -0.108 -1.028 H29 6BI 62 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6BI C17 N4 DOUB Y N 1 6BI C17 N5 SING Y N 2 6BI N4 C8 SING Y N 3 6BI C9 C10 SING N N 4 6BI C9 N2 SING N N 5 6BI N5 C6 DOUB Y N 6 6BI C8 N2 SING N N 7 6BI C8 C7 DOUB Y N 8 6BI C6 C7 SING Y N 9 6BI C6 N SING Y N 10 6BI C7 N1 SING Y N 11 6BI O C SING N N 12 6BI N C4 SING N N 13 6BI N C5 SING Y N 14 6BI N1 C5 DOUB Y N 15 6BI C4 C SING N N 16 6BI C4 O12 SING N N 17 6BI C C1 SING N N 18 6BI O1 C1 SING N N 19 6BI C1 C2 SING N N 20 6BI O12 C2 SING N N 21 6BI C2 C3 SING N N 22 6BI C3 O2 SING N N 23 6BI O2 P SING N N 24 6BI O4 P DOUB N N 25 6BI P O3 SING N N 26 6BI P O11 SING N N 27 6BI C H1 SING N N 28 6BI O H2 SING N N 29 6BI C1 H3 SING N N 30 6BI C10 H4 SING N N 31 6BI C10 H5 SING N N 32 6BI C17 H7 SING N N 33 6BI C2 H8 SING N N 34 6BI C3 H9 SING N N 35 6BI C3 H10 SING N N 36 6BI C4 H11 SING N N 37 6BI C5 H12 SING N N 38 6BI C9 H13 SING N N 39 6BI C9 H14 SING N N 40 6BI N2 H15 SING N N 41 6BI O1 H16 SING N N 42 6BI O11 H17 SING N N 43 6BI O3 H18 SING N N 44 6BI C11 C10 SING N N 45 6BI C12 C11 SING N N 46 6BI C13 C12 SING N N 47 6BI C14 C13 SING N N 48 6BI N3 C14 SING N N 49 6BI C15 N3 SING N N 50 6BI C16 C15 SING N N 51 6BI O5 C15 DOUB N N 52 6BI CL1 C16 SING N N 53 6BI C11 H6 SING N N 54 6BI C11 H19 SING N N 55 6BI C12 H20 SING N N 56 6BI C12 H21 SING N N 57 6BI C13 H22 SING N N 58 6BI C13 H23 SING N N 59 6BI C14 H24 SING N N 60 6BI C14 H25 SING N N 61 6BI N3 H26 SING N N 62 6BI C16 H27 SING N N 63 6BI C16 H29 SING N N 64 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6BI InChI InChI 1.03 "InChI=1S/C18H28ClN6O8P/c19-7-12(26)20-5-3-1-2-4-6-21-16-13-17(23-9-22-16)25(10-24-13)18-15(28)14(27)11(33-18)8-32-34(29,30)31/h9-11,14-15,18,27-28H,1-8H2,(H,20,26)(H,21,22,23)(H2,29,30,31)/t11-,14-,15-,18-/m1/s1" 6BI InChIKey InChI 1.03 QFONDZUXFQHEPG-XKLVTHTNSA-N 6BI SMILES_CANONICAL CACTVS 3.385 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c(NCCCCCCNC(=O)CCl)ncnc23" 6BI SMILES CACTVS 3.385 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c(NCCCCCCNC(=O)CCl)ncnc23" 6BI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)NCCCCCCNC(=O)CCl" 6BI SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)NCCCCCCNC(=O)CCl" # _pdbx_chem_comp_identifier.comp_id 6BI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-[6-[6-(2-chloranylethanoylamino)hexylamino]purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6BI "Create component" 2021-07-26 PDBE 6BI "Initial release" 2022-06-01 RCSB ##