data_6BV # _chem_comp.id 6BV _chem_comp.name "(2~{R},3~{S},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-4-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-oxane-2,3,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H22 O10 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-10-02 _chem_comp.pdbx_modified_date 2020-08-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 358.362 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6BV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6L1J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6BV O41 O1 O 0 1 N N N 26.036 28.804 34.571 2.567 0.791 -2.315 O41 6BV 1 6BV C41 C1 C 0 1 N N R 26.541 29.567 35.681 2.699 0.772 -0.892 C41 6BV 2 6BV C51 C2 C 0 1 N N R 27.600 30.523 35.044 3.836 -0.174 -0.497 C51 6BV 3 6BV C61 C3 C 0 1 N N N 26.944 31.449 34.029 5.155 0.347 -1.071 C61 6BV 4 6BV O61 O2 O 0 1 N N N 25.869 32.056 34.614 6.196 -0.595 -0.802 O61 6BV 5 6BV O01 O3 O 0 1 N N N 28.286 31.287 36.106 3.928 -0.236 0.928 O01 6BV 6 6BV C11 C4 C 0 1 N N R 29.221 30.361 36.817 2.752 -0.737 1.567 C11 6BV 7 6BV O11 O4 O 0 1 N N N 30.079 31.180 37.629 2.961 -0.782 2.980 O11 6BV 8 6BV C21 C5 C 0 1 N N S 28.303 29.370 37.601 1.571 0.186 1.255 C21 6BV 9 6BV O21 O5 O 0 1 N N N 29.049 28.398 38.350 0.382 -0.343 1.845 O21 6BV 10 6BV C31 C6 C 0 1 N N S 27.358 28.611 36.600 1.392 0.277 -0.264 C31 6BV 11 6BV S12 S1 S 0 1 N N N 26.295 27.424 37.387 0.055 1.441 -0.648 S12 6BV 12 6BV C12 C7 C 0 1 N N S 25.917 26.013 36.299 -1.411 0.619 0.036 C12 6BV 13 6BV O02 O6 O 0 1 N N N 25.478 26.318 35.030 -1.655 -0.594 -0.679 O02 6BV 14 6BV C52 C8 C 0 1 N N R 25.035 25.192 34.191 -2.778 -1.337 -0.202 C52 6BV 15 6BV C62 C9 C 0 1 N N N 24.574 25.647 32.760 -2.925 -2.621 -1.020 C62 6BV 16 6BV O62 O7 O 0 1 N N N 23.652 26.745 33.004 -1.792 -3.463 -0.792 O62 6BV 17 6BV C42 C10 C 0 1 N N S 23.747 24.554 34.950 -4.046 -0.491 -0.347 C42 6BV 18 6BV O42 O8 O 0 1 N N N 23.216 23.444 34.306 -5.162 -1.210 0.183 O42 6BV 19 6BV C32 C11 C 0 1 N N S 24.316 24.026 36.311 -3.868 0.820 0.425 C32 6BV 20 6BV O32 O9 O 0 1 N N N 23.218 23.366 37.057 -5.017 1.647 0.235 O32 6BV 21 6BV C22 C12 C 0 1 N N R 24.985 25.118 37.121 -2.624 1.543 -0.100 C22 6BV 22 6BV O22 O10 O 0 1 N N N 25.728 24.583 38.223 -2.406 2.732 0.662 O22 6BV 23 6BV H1 H1 H 0 1 N N N 25.379 28.192 34.880 3.359 1.095 -2.779 H1 6BV 24 6BV H2 H2 H 0 1 N N N 25.768 30.117 36.237 2.918 1.777 -0.533 H2 6BV 25 6BV H3 H3 H 0 1 N N N 28.340 29.902 34.517 3.635 -1.170 -0.892 H3 6BV 26 6BV H4 H4 H 0 1 N N N 26.610 30.865 33.158 5.055 0.479 -2.148 H4 6BV 27 6BV H5 H5 H 0 1 N N N 27.667 32.212 33.704 5.401 1.303 -0.608 H5 6BV 28 6BV H6 H6 H 0 1 N N N 25.453 32.636 33.988 7.063 -0.329 -1.138 H6 6BV 29 6BV H7 H7 H 0 1 N N N 29.811 29.793 36.082 2.537 -1.740 1.199 H7 6BV 30 6BV H8 H8 H 0 1 N N N 30.692 30.628 38.100 3.696 -1.349 3.252 H8 6BV 31 6BV H9 H9 H 0 1 N N N 27.671 29.958 38.283 1.768 1.179 1.660 H9 6BV 32 6BV H10 H10 H 0 1 N N N 29.626 28.842 38.960 0.427 -0.433 2.807 H10 6BV 33 6BV H11 H11 H 0 1 N N N 28.007 28.013 35.943 1.145 -0.707 -0.662 H11 6BV 34 6BV H12 H12 H 0 1 N N N 26.875 25.478 36.218 -1.242 0.393 1.089 H12 6BV 35 6BV H13 H13 H 0 1 N N N 25.820 24.426 34.105 -2.627 -1.589 0.848 H13 6BV 36 6BV H14 H14 H 0 1 N N N 24.067 24.824 32.235 -3.832 -3.144 -0.716 H14 6BV 37 6BV H15 H15 H 0 1 N N N 25.434 25.987 32.165 -2.986 -2.373 -2.079 H15 6BV 38 6BV H16 H16 H 0 1 N N N 23.327 27.076 32.175 -1.818 -4.297 -1.280 H16 6BV 39 6BV H17 H17 H 0 1 N N N 23.001 25.342 35.130 -4.220 -0.273 -1.401 H17 6BV 40 6BV H18 H18 H 0 1 N N N 22.470 23.120 34.797 -6.001 -0.732 0.124 H18 6BV 41 6BV H19 H19 H 0 1 N N N 25.077 23.267 36.074 -3.745 0.604 1.486 H19 6BV 42 6BV H20 H20 H 0 1 N N N 23.549 23.040 37.886 -4.972 2.495 0.697 H20 6BV 43 6BV H21 H21 H 0 1 N N N 24.188 25.762 37.522 -2.768 1.803 -1.148 H21 6BV 44 6BV H22 H22 H 0 1 N N N 25.164 24.024 38.744 -1.630 3.239 0.387 H22 6BV 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6BV C62 O62 SING N N 1 6BV C62 C52 SING N N 2 6BV C61 O61 SING N N 3 6BV C61 C51 SING N N 4 6BV C52 C42 SING N N 5 6BV C52 O02 SING N N 6 6BV O42 C42 SING N N 7 6BV O41 C41 SING N N 8 6BV C42 C32 SING N N 9 6BV O02 C12 SING N N 10 6BV C51 C41 SING N N 11 6BV C51 O01 SING N N 12 6BV C41 C31 SING N N 13 6BV O01 C11 SING N N 14 6BV C12 C22 SING N N 15 6BV C12 S12 SING N N 16 6BV C32 O32 SING N N 17 6BV C32 C22 SING N N 18 6BV C31 S12 SING N N 19 6BV C31 C21 SING N N 20 6BV C11 C21 SING N N 21 6BV C11 O11 SING N N 22 6BV C22 O22 SING N N 23 6BV C21 O21 SING N N 24 6BV O41 H1 SING N N 25 6BV C41 H2 SING N N 26 6BV C51 H3 SING N N 27 6BV C61 H4 SING N N 28 6BV C61 H5 SING N N 29 6BV O61 H6 SING N N 30 6BV C11 H7 SING N N 31 6BV O11 H8 SING N N 32 6BV C21 H9 SING N N 33 6BV O21 H10 SING N N 34 6BV C31 H11 SING N N 35 6BV C12 H12 SING N N 36 6BV C52 H13 SING N N 37 6BV C62 H14 SING N N 38 6BV C62 H15 SING N N 39 6BV O62 H16 SING N N 40 6BV C42 H17 SING N N 41 6BV O42 H18 SING N N 42 6BV C32 H19 SING N N 43 6BV O32 H20 SING N N 44 6BV C22 H21 SING N N 45 6BV O22 H22 SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6BV InChI InChI 1.03 "InChI=1S/C12H22O10S/c13-1-3-5(15)7(17)8(18)12(22-3)23-10-6(16)4(2-14)21-11(20)9(10)19/h3-20H,1-2H2/t3-,4-,5-,6-,7+,8-,9-,10+,11-,12+/m1/s1" 6BV InChIKey InChI 1.03 XRTVCRDMGYFFNB-CSOAUFAESA-N 6BV SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](S[C@@H]2[C@@H](O)[C@H](O)O[C@H](CO)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O" 6BV SMILES CACTVS 3.385 "OC[CH]1O[CH](S[CH]2[CH](O)[CH](O)O[CH](CO)[CH]2O)[CH](O)[CH](O)[CH]1O" 6BV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)S[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O" 6BV SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)O)O)SC2C(C(C(C(O2)CO)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id 6BV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-4-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-oxane-2,3,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6BV "Create component" 2019-10-02 PDBJ 6BV "Initial release" 2020-08-19 RCSB ##