data_6C2 # _chem_comp.id 6C2 _chem_comp.name "methyl 2-acetamido-2-deoxy-beta-D-glucopyranosiduronic acid" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C9 H15 N O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;methyl 2-(acetylamino)-2-deoxy-beta-D-glucopyranosiduronic acid; methyl 2-acetamido-2-deoxy-beta-D-glucosiduronic acid; methyl 2-acetamido-2-deoxy-D-glucosiduronic acid; methyl 2-acetamido-2-deoxy-glucosiduronic acid ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-03-05 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 249.218 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6C2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4Y1Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 6C2 "methyl 2-(acetylamino)-2-deoxy-beta-D-glucopyranosiduronic acid" PDB ? 2 6C2 "methyl 2-acetamido-2-deoxy-beta-D-glucosiduronic acid" PDB ? 3 6C2 "methyl 2-acetamido-2-deoxy-D-glucosiduronic acid" PDB ? 4 6C2 "methyl 2-acetamido-2-deoxy-glucosiduronic acid" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6C2 O4 O1 O 0 1 N N N 8.494 -45.584 -23.778 -2.401 -2.124 -0.263 O4 6C2 1 6C2 C1 C11 C 0 1 N N R 8.182 -49.540 -24.744 0.491 0.883 -0.454 C1 6C2 2 6C2 O1 O11 O 0 1 N N N 8.396 -50.934 -24.957 1.385 1.910 -0.022 O1 6C2 3 6C2 O5 O51 O 0 1 N N N 9.288 -48.813 -25.263 -0.830 1.174 0.010 O5 6C2 4 6C2 C5 C51 C 0 1 N N S 9.019 -47.416 -25.242 -1.813 0.218 -0.391 C5 6C2 5 6C2 C6 C61 C 0 1 N N N 10.072 -46.699 -26.035 -3.164 0.639 0.128 C6 6C2 6 6C2 O6B O61 O 0 1 N N N 11.215 -47.200 -26.097 -4.260 -0.058 -0.212 O6B 6C2 7 6C2 C4 C41 C 0 1 N N S 8.983 -46.923 -23.798 -1.451 -1.155 0.183 C4 6C2 8 6C2 C3 C31 C 0 1 N N R 8.021 -47.754 -22.952 -0.052 -1.549 -0.300 C3 6C2 9 6C2 O3 O31 O 0 1 N N N 8.322 -47.550 -21.565 0.324 -2.795 0.290 O3 6C2 10 6C2 C2 C21 C 0 1 N N R 8.043 -49.253 -23.251 0.945 -0.463 0.118 C2 6C2 11 6C2 N2 N2 N 0 1 N N N 6.796 -49.818 -22.767 2.274 -0.792 -0.403 N2 6C2 12 6C2 C7 C7 C 0 1 N N N 6.707 -50.923 -22.027 3.375 -0.309 0.206 C7 6C2 13 6C2 C8 C8 C 0 1 N N N 7.902 -51.826 -22.028 4.742 -0.648 -0.330 C8 6C2 14 6C2 O7 O7 O 0 1 N N N 5.704 -51.188 -21.384 3.266 0.398 1.185 O7 6C2 15 6C2 C9 C9 C 0 1 N N N 8.342 -51.280 -26.339 1.116 3.193 -0.592 C9 6C2 16 6C2 O6A O10 O 0 1 N N N 9.764 -45.626 -26.599 -3.260 1.604 0.849 O6A 6C2 17 6C2 H1 H12 H 0 1 N N N 7.257 -49.223 -25.247 0.491 0.834 -1.543 H1 6C2 18 6C2 H5 H13 H 0 1 N N N 8.038 -47.219 -25.700 -1.842 0.161 -1.479 H5 6C2 19 6C2 HO6B H14 H 0 0 N N N 11.777 -46.644 -26.624 -5.104 0.250 0.145 HO6B 6C2 20 6C2 H4 H15 H 0 1 N N N 9.993 -46.979 -23.366 -1.462 -1.109 1.272 H4 6C2 21 6C2 H3 H16 H 0 1 N N N 7.002 -47.390 -23.151 -0.054 -1.645 -1.386 H3 6C2 22 6C2 HO3 H17 H 0 1 N Y N 7.727 -48.064 -21.032 -0.269 -3.527 0.073 HO3 6C2 23 6C2 H2 H18 H 0 1 N N N 8.892 -49.709 -22.720 0.984 -0.403 1.205 H2 6C2 24 6C2 H19 H19 H 0 1 N N N 5.947 -49.346 -23.005 2.362 -1.358 -1.186 H19 6C2 25 6C2 H20 H20 H 0 1 N N N 7.704 -52.698 -21.387 4.641 -1.288 -1.206 H20 6C2 26 6C2 H21 H21 H 0 1 N N N 8.105 -52.165 -23.055 5.261 0.270 -0.608 H21 6C2 27 6C2 H22 H22 H 0 1 N N N 8.775 -51.279 -21.643 5.314 -1.170 0.438 H22 6C2 28 6C2 H23 H23 H 0 1 N N N 8.512 -52.361 -26.454 1.838 3.917 -0.215 H23 6C2 29 6C2 H24 H24 H 0 1 N N N 7.353 -51.019 -26.744 1.196 3.132 -1.677 H24 6C2 30 6C2 H25 H25 H 0 1 N N N 9.119 -50.727 -26.886 0.109 3.507 -0.319 H25 6C2 31 6C2 HO4 H2 H 0 1 N Y N 8.468 -45.269 -22.882 -3.311 -1.935 0.003 HO4 6C2 32 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6C2 O6A C6 DOUB N N 1 6C2 C9 O1 SING N N 2 6C2 O6B C6 SING N N 3 6C2 C6 C5 SING N N 4 6C2 O5 C5 SING N N 5 6C2 O5 C1 SING N N 6 6C2 C5 C4 SING N N 7 6C2 O1 C1 SING N N 8 6C2 C1 C2 SING N N 9 6C2 C4 O4 SING N N 10 6C2 C4 C3 SING N N 11 6C2 C2 C3 SING N N 12 6C2 C2 N2 SING N N 13 6C2 C3 O3 SING N N 14 6C2 N2 C7 SING N N 15 6C2 C8 C7 SING N N 16 6C2 C7 O7 DOUB N N 17 6C2 C1 H1 SING N N 18 6C2 C5 H5 SING N N 19 6C2 O6B HO6B SING N N 20 6C2 C4 H4 SING N N 21 6C2 C3 H3 SING N N 22 6C2 O3 HO3 SING N N 23 6C2 C2 H2 SING N N 24 6C2 N2 H19 SING N N 25 6C2 C8 H20 SING N N 26 6C2 C8 H21 SING N N 27 6C2 C8 H22 SING N N 28 6C2 C9 H23 SING N N 29 6C2 C9 H24 SING N N 30 6C2 C9 H25 SING N N 31 6C2 O4 HO4 SING N N 32 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6C2 SMILES ACDLabs 12.01 "OC1C(OC(C(C1O)NC(=O)C)OC)C(O)=O" 6C2 InChI InChI 1.03 "InChI=1S/C9H15NO7/c1-3(11)10-4-5(12)6(13)7(8(14)15)17-9(4)16-2/h4-7,9,12-13H,1-2H3,(H,10,11)(H,14,15)/t4-,5-,6+,7+,9-/m1/s1" 6C2 InChIKey InChI 1.03 HPXHVBAASZCSSR-CRYJZLASSA-N 6C2 SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1O[C@@H]([C@@H](O)[C@H](O)[C@H]1NC(C)=O)C(O)=O" 6C2 SMILES CACTVS 3.385 "CO[CH]1O[CH]([CH](O)[CH](O)[CH]1NC(C)=O)C(O)=O" 6C2 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1OC)C(=O)O)O)O" 6C2 SMILES "OpenEye OEToolkits" 1.9.2 "CC(=O)NC1C(C(C(OC1OC)C(=O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6C2 "SYSTEMATIC NAME" ACDLabs 12.01 "methyl 2-(acetylamino)-2-deoxy-beta-D-glucopyranosiduronic acid" 6C2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S,3S,4R,5R,6R)-5-acetamido-6-methoxy-3,4-bis(oxidanyl)oxane-2-carboxylic acid" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 6C2 "CARBOHYDRATE ISOMER" D PDB ? 6C2 "CARBOHYDRATE RING" pyranose PDB ? 6C2 "CARBOHYDRATE ANOMER" beta PDB ? 6C2 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6C2 "Create component" 2015-03-05 PDBJ 6C2 "Initial release" 2016-04-06 RCSB 6C2 "Other modification" 2020-07-03 RCSB 6C2 "Modify name" 2020-07-17 RCSB 6C2 "Modify synonyms" 2020-07-17 RCSB 6C2 "Modify internal type" 2020-07-17 RCSB 6C2 "Modify linking type" 2020-07-17 RCSB 6C2 "Modify atom id" 2020-07-17 RCSB 6C2 "Modify component atom id" 2020-07-17 RCSB 6C2 "Modify leaving atom flag" 2020-07-17 RCSB ##