data_6D0 # _chem_comp.id 6D0 _chem_comp.name "5'-{[(3S)-3-amino-3-carboxypropyl](3-bromo-2-oxopropyl)amino}-5'-deoxyadenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H24 Br N7 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-03-16 _chem_comp.pdbx_modified_date 2017-03-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 502.320 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6D0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5ISC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6D0 O1 O O 0 1 N N N 23.217 14.202 120.005 -5.379 3.242 2.894 O1 6D0 1 6D0 C1 C C 0 1 N N N 23.925 15.209 119.936 -5.679 2.602 1.914 C1 6D0 2 6D0 C2 CA C 0 1 N N S 23.257 16.530 119.573 -4.839 2.695 0.667 C2 6D0 3 6D0 N1 N N 0 1 N N N 21.948 16.585 120.108 -4.040 3.928 0.705 N1 6D0 4 6D0 C3 CB C 0 1 N N N 24.120 17.697 120.065 -3.906 1.485 0.588 C3 6D0 5 6D0 C4 CG C 0 1 N N N 23.926 18.196 121.480 -3.143 1.514 -0.737 C4 6D0 6 6D0 N2 NA* N 0 1 N N N 23.348 19.591 121.608 -2.247 0.352 -0.812 N2 6D0 7 6D0 C5 C5* C 0 1 N N N 24.334 20.732 121.260 -1.329 0.468 -1.953 C5 6D0 8 6D0 C6 C4* C 0 1 N N R 24.487 20.989 119.852 -0.230 1.479 -1.623 C6 6D0 9 6D0 O2 O4* O 0 1 N N N 23.535 21.961 119.364 0.496 1.049 -0.459 O2 6D0 10 6D0 C7 C1* C 0 1 N N R 24.297 22.990 118.682 1.867 1.462 -0.641 C7 6D0 11 6D0 C8 C2* C 0 1 N N R 25.671 22.956 119.297 2.133 1.182 -2.142 C8 6D0 12 6D0 O3 O2* O 0 1 N N N 26.652 23.438 118.432 3.182 2.016 -2.639 O3 6D0 13 6D0 C9 C3* C 0 1 N N S 25.888 21.538 119.566 0.774 1.561 -2.789 C9 6D0 14 6D0 O4 O3* O 0 1 N N N 26.424 20.864 118.438 0.825 2.887 -3.319 O4 6D0 15 6D0 N3 N9 N 0 1 Y N N 23.643 24.244 118.839 2.763 0.662 0.199 N3 6D0 16 6D0 C10 C8 C 0 1 Y N N 23.575 24.980 119.962 2.477 -0.547 0.759 C10 6D0 17 6D0 N4 N7 N 0 1 Y N N 22.879 26.081 119.744 3.499 -0.973 1.443 N4 6D0 18 6D0 C11 C5 C 0 1 Y N N 22.469 26.079 118.445 4.503 -0.067 1.365 C11 6D0 19 6D0 C12 C6 C 0 1 Y N N 21.706 26.947 117.598 5.806 0.012 1.886 C12 6D0 20 6D0 N5 N6 N 0 1 N N N 21.174 28.154 118.086 6.314 -1.002 2.679 N5 6D0 21 6D0 C13 C4 C 0 1 Y N N 22.957 24.894 117.868 4.044 0.991 0.561 C13 6D0 22 6D0 N6 N3 N 0 1 Y N N 22.685 24.625 116.542 4.851 2.020 0.327 N6 6D0 23 6D0 C14 C2 C 0 1 Y N N 21.968 25.480 115.803 6.063 2.053 0.839 C14 6D0 24 6D0 N7 N1 N 0 1 Y N N 21.489 26.596 116.291 6.539 1.083 1.598 N7 6D0 25 6D0 C15 CB* C 0 1 N N N 22.865 19.774 122.952 -3.014 -0.900 -0.878 C15 6D0 26 6D0 C16 CG* C 0 1 N N N 23.907 19.814 124.063 -2.112 -2.059 -0.541 C16 6D0 27 6D0 C17 CD* C 0 1 N N N 23.474 19.759 125.544 -2.658 -3.463 -0.541 C17 6D0 28 6D0 O5 OD1* O 0 1 N N N 25.125 19.881 123.799 -0.951 -1.862 -0.271 O5 6D0 29 6D0 BR1 BRE* BR 0 0 N N N 24.892 19.085 126.704 -1.227 -4.723 -0.062 BR1 6D0 30 6D0 O6 OXT O 0 1 N N N 25.237 15.196 120.165 -6.759 1.805 1.938 O6 6D0 31 6D0 H1 HA H 0 1 N N N 23.204 16.591 118.476 -5.488 2.711 -0.209 H1 6D0 32 6D0 H2 H2 H 0 1 N N N 21.523 17.456 119.862 -4.633 4.744 0.692 H2 6D0 33 6D0 H3 H H 0 1 N N N 21.404 15.832 119.737 -3.429 3.937 1.508 H3 6D0 34 6D0 H5 HB2 H 0 1 N N N 25.171 17.385 119.973 -3.198 1.518 1.416 H5 6D0 35 6D0 H6 HB3 H 0 1 N N N 23.930 18.547 119.393 -4.494 0.569 0.649 H6 6D0 36 6D0 H7 HG3 H 0 1 N N N 23.247 17.500 121.994 -3.851 1.481 -1.565 H7 6D0 37 6D0 H8 HG2 H 0 1 N N N 24.906 18.189 121.979 -2.555 2.430 -0.798 H8 6D0 38 6D0 H10 H5*1 H 0 1 N N N 25.321 20.468 121.669 -0.880 -0.504 -2.158 H10 6D0 39 6D0 H11 H5*2 H 0 1 N N N 23.973 21.654 121.739 -1.881 0.805 -2.831 H11 6D0 40 6D0 H12 H4*1 H 0 1 N N N 24.366 20.049 119.294 -0.670 2.460 -1.444 H12 6D0 41 6D0 H13 H1*1 H 0 1 N N N 24.380 22.740 117.614 1.985 2.523 -0.422 H13 6D0 42 6D0 H14 H2*1 H 0 1 N N N 25.663 23.522 120.240 2.363 0.129 -2.307 H14 6D0 43 6D0 H15 H2*2 H 0 1 N N N 27.499 23.398 118.860 3.385 1.878 -3.574 H15 6D0 44 6D0 H16 H3*1 H 0 1 N N N 26.526 21.404 120.452 0.511 0.847 -3.569 H16 6D0 45 6D0 H17 H3*2 H 0 1 N N N 26.552 19.946 118.648 1.485 3.007 -4.015 H17 6D0 46 6D0 H18 H81 H 0 1 N N N 24.025 24.710 120.906 1.540 -1.074 0.651 H18 6D0 47 6D0 H19 H62 H 0 1 N N N 20.676 28.619 117.354 5.769 -1.778 2.881 H19 6D0 48 6D0 H20 H61 H 0 1 N N N 20.550 27.961 118.844 7.214 -0.936 3.032 H20 6D0 49 6D0 H21 H21 H 0 1 N N N 21.778 25.241 114.767 6.693 2.905 0.630 H21 6D0 50 6D0 H22 HB*2 H 0 1 N N N 22.314 20.726 122.980 -3.836 -0.860 -0.164 H22 6D0 51 6D0 H23 HB*1 H 0 1 N N N 22.176 18.945 123.173 -3.412 -1.030 -1.884 H23 6D0 52 6D0 H24 HD*2 H 0 1 N N N 23.201 20.773 125.871 -3.467 -3.539 0.186 H24 6D0 53 6D0 H25 HD*1 H 0 1 N N N 22.600 19.098 125.633 -3.039 -3.705 -1.533 H25 6D0 54 6D0 H26 H4 H 0 1 N N N 25.513 14.313 120.380 -7.264 1.775 2.762 H26 6D0 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6D0 C14 N7 DOUB Y N 1 6D0 C14 N6 SING Y N 2 6D0 N7 C12 SING Y N 3 6D0 N6 C13 DOUB Y N 4 6D0 C12 N5 SING N N 5 6D0 C12 C11 DOUB Y N 6 6D0 C13 C11 SING Y N 7 6D0 C13 N3 SING Y N 8 6D0 O3 C8 SING N N 9 6D0 O4 C9 SING N N 10 6D0 C11 N4 SING Y N 11 6D0 C7 N3 SING N N 12 6D0 C7 C8 SING N N 13 6D0 C7 O2 SING N N 14 6D0 N3 C10 SING Y N 15 6D0 C8 C9 SING N N 16 6D0 O2 C6 SING N N 17 6D0 C9 C6 SING N N 18 6D0 C2 C1 SING N N 19 6D0 C2 C3 SING N N 20 6D0 C2 N1 SING N N 21 6D0 N4 C10 DOUB Y N 22 6D0 C6 C5 SING N N 23 6D0 C1 O1 DOUB N N 24 6D0 C1 O6 SING N N 25 6D0 C3 C4 SING N N 26 6D0 C5 N2 SING N N 27 6D0 C4 N2 SING N N 28 6D0 N2 C15 SING N N 29 6D0 C15 C16 SING N N 30 6D0 O5 C16 DOUB N N 31 6D0 C16 C17 SING N N 32 6D0 C17 BR1 SING N N 33 6D0 C2 H1 SING N N 34 6D0 N1 H2 SING N N 35 6D0 N1 H3 SING N N 36 6D0 C3 H5 SING N N 37 6D0 C3 H6 SING N N 38 6D0 C4 H7 SING N N 39 6D0 C4 H8 SING N N 40 6D0 C5 H10 SING N N 41 6D0 C5 H11 SING N N 42 6D0 C6 H12 SING N N 43 6D0 C7 H13 SING N N 44 6D0 C8 H14 SING N N 45 6D0 O3 H15 SING N N 46 6D0 C9 H16 SING N N 47 6D0 O4 H17 SING N N 48 6D0 C10 H18 SING N N 49 6D0 N5 H19 SING N N 50 6D0 N5 H20 SING N N 51 6D0 C14 H21 SING N N 52 6D0 C15 H22 SING N N 53 6D0 C15 H23 SING N N 54 6D0 C17 H24 SING N N 55 6D0 C17 H25 SING N N 56 6D0 O6 H26 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6D0 SMILES ACDLabs 12.01 "O=C(O)C(CCN(CC(CBr)=O)CC3OC(n1cnc2c(N)ncnc12)C(C3O)O)N" 6D0 InChI InChI 1.03 "InChI=1S/C17H24BrN7O6/c18-3-8(26)4-24(2-1-9(19)17(29)30)5-10-12(27)13(28)16(31-10)25-7-23-11-14(20)21-6-22-15(11)25/h6-7,9-10,12-13,16,27-28H,1-5,19H2,(H,29,30)(H2,20,21,22)/t9-,10+,12+,13+,16+/m0/s1" 6D0 InChIKey InChI 1.03 DHRFKRQEQCVPMB-UOYPZJKHSA-N 6D0 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCN(C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)CC(=O)CBr)C(O)=O" 6D0 SMILES CACTVS 3.385 "N[CH](CCN(C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)CC(=O)CBr)C(O)=O" 6D0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CC[C@@H](C(=O)O)N)CC(=O)CBr)O)O)N" 6D0 SMILES "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCC(C(=O)O)N)CC(=O)CBr)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6D0 "SYSTEMATIC NAME" ACDLabs 12.01 "5'-{[(3S)-3-amino-3-carboxypropyl](3-bromo-2-oxopropyl)amino}-5'-deoxyadenosine" 6D0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(3-bromanyl-2-oxidanylidene-propyl)amino]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6D0 "Create component" 2016-03-16 EBI 6D0 "Initial release" 2017-03-15 RCSB #