data_6DO # _chem_comp.id 6DO _chem_comp.name "(2~{S})-2-[[(2~{R},3~{R})-3-methoxy-3-[(2~{S})-1-[(3~{R},4~{S},5~{S})-3-methoxy-5-methyl-4-[methyl-[(2~{S})-3-methyl-2-[[(2~{S})-3-methyl-2-(methylamino)butanoyl]amino]butanoyl]amino]heptanoyl]pyrrolidin-2-yl]-2-methyl-propanoyl]amino]-3-phenyl-propanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C39 H65 N5 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-03-30 _chem_comp.pdbx_modified_date 2016-08-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 731.962 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6DO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 5J2U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6DO C10 C1 C 0 1 N N S 4.731 56.243 15.408 ? ? ? C10 6DO 1 6DO C13 C2 C 0 1 N N R 2.438 52.356 13.523 ? ? ? C13 6DO 2 6DO C15 C3 C 0 1 N N N 0.932 54.328 13.393 ? ? ? C15 6DO 3 6DO C17 C4 C 0 1 N N N 5.442 50.929 12.014 ? ? ? C17 6DO 4 6DO C20 C5 C 0 1 N N N 0.675 50.865 12.941 ? ? ? C20 6DO 5 6DO C21 C6 C 0 1 N N N 3.456 48.274 15.175 ? ? ? C21 6DO 6 6DO C22 C7 C 0 1 N N N 1.614 44.442 15.839 ? ? ? C22 6DO 7 6DO N01 N1 N 0 1 N N N 1.329 42.132 15.971 ? ? ? N01 6DO 8 6DO C02 C8 C 0 1 N N S 1.618 43.136 15.012 ? ? ? C02 6DO 9 6DO C03 C9 C 0 1 Y N N 7.472 54.594 15.669 ? ? ? C03 6DO 10 6DO C05 C10 C 0 1 Y N N 7.028 54.710 13.195 ? ? ? C05 6DO 11 6DO C06 C11 C 0 1 Y N N 7.726 53.556 12.977 ? ? ? C06 6DO 12 6DO C07 C12 C 0 1 Y N N 8.372 52.813 14.148 ? ? ? C07 6DO 13 6DO C08 C13 C 0 1 Y N N 8.251 53.308 15.418 ? ? ? C08 6DO 14 6DO C09 C14 C 0 1 N N N 6.095 56.576 14.865 ? ? ? C09 6DO 15 6DO C11 C15 C 0 1 N N N 3.067 54.518 14.621 ? ? ? C11 6DO 16 6DO C12 C16 C 0 1 N N R 2.363 53.877 13.427 ? ? ? C12 6DO 17 6DO C14 C17 C 0 1 N N S 3.874 51.880 13.491 ? ? ? C14 6DO 18 6DO C16 C18 C 0 1 N N N 4.508 52.149 12.173 ? ? ? C16 6DO 19 6DO C18 C19 C 0 1 N N N 4.584 49.813 12.673 ? ? ? C18 6DO 20 6DO O23 O1 O 0 1 N N N 0.584 44.716 16.377 ? ? ? O23 6DO 21 6DO N24 N2 N 0 1 N N N 4.021 55.583 14.366 ? ? ? N24 6DO 22 6DO N25 N3 N 0 1 N N N 3.916 50.461 13.753 ? ? ? N25 6DO 23 6DO O26 O2 O 0 1 N N N 1.696 51.786 12.474 ? ? ? O26 6DO 24 6DO O27 O3 O 0 1 N N N 2.841 54.132 15.774 ? ? ? O27 6DO 25 6DO O28 O4 O 0 1 N N N 2.835 50.500 15.853 ? ? ? O28 6DO 26 6DO C29 C20 C 0 1 N N N 0.544 43.208 13.946 ? ? ? C29 6DO 27 6DO C30 C21 C 0 1 N N R 2.243 47.736 15.981 ? ? ? C30 6DO 28 6DO C31 C22 C 0 1 N N S 2.561 46.540 16.869 ? ? ? C31 6DO 29 6DO C33 C23 C 0 1 N N S 3.690 46.778 17.856 ? ? ? C33 6DO 30 6DO C34 C24 C 0 1 N N N 3.539 48.089 18.563 ? ? ? C34 6DO 31 6DO C35 C25 C 0 1 N N N 3.717 45.626 18.851 ? ? ? C35 6DO 32 6DO C36 C26 C 0 1 N N N 2.753 45.801 20.025 ? ? ? C36 6DO 33 6DO C38 C27 C 0 1 N N N 2.402 41.510 16.730 ? ? ? C38 6DO 34 6DO C39 C28 C 0 1 N N S 2.012 40.460 17.782 ? ? ? C39 6DO 35 6DO C41 C29 C 0 1 N N N 2.190 41.007 19.173 ? ? ? C41 6DO 36 6DO C42 C30 C 0 1 N N N 1.429 42.357 19.353 ? ? ? C42 6DO 37 6DO C43 C31 C 0 1 N N N 3.694 41.175 19.547 ? ? ? C43 6DO 38 6DO N44 N4 N 0 1 N N N 2.794 45.362 16.031 ? ? ? N44 6DO 39 6DO N45 N5 N 0 1 N N N 2.775 39.268 17.546 ? ? ? N45 6DO 40 6DO O46 O5 O 0 1 N N N 1.205 47.343 15.090 ? ? ? O46 6DO 41 6DO O47 O6 O 0 1 N N N 3.558 41.815 16.529 ? ? ? O47 6DO 42 6DO C48 C32 C 0 1 N N N 0.897 44.335 12.970 ? ? ? C48 6DO 43 6DO C49 C33 C 0 1 N N N 0.539 41.887 13.196 ? ? ? C49 6DO 44 6DO C50 C34 C 0 1 N N N 3.987 57.528 15.749 ? ? ? C50 6DO 45 6DO O51 O7 O 0 1 N N N 4.125 58.050 16.824 ? ? ? O51 6DO 46 6DO O52 O8 O 0 1 N N N 3.251 58.028 14.915 ? ? ? O52 6DO 47 6DO C40 C35 C 0 1 N N N 2.239 38.630 16.346 ? ? ? C40 6DO 48 6DO C19 C36 C 0 1 N N N 3.364 49.821 14.982 ? ? ? C19 6DO 49 6DO C32 C37 C 0 1 N N N -0.025 48.067 15.277 ? ? ? C32 6DO 50 6DO C37 C38 C 0 1 N N N 4.065 45.105 15.440 ? ? ? C37 6DO 51 6DO C04 C39 C 0 1 Y N N 6.894 55.259 14.615 ? ? ? C04 6DO 52 6DO H101 H1 H 0 0 N N N 4.820 55.609 16.302 ? ? ? H101 6DO 53 6DO H131 H2 H 0 0 N N N 2.001 52.056 14.487 ? ? ? H131 6DO 54 6DO H151 H3 H 0 0 N N N 0.894 55.425 13.324 ? ? ? H151 6DO 55 6DO H152 H4 H 0 0 N N N 0.430 53.888 12.519 ? ? ? H152 6DO 56 6DO H153 H5 H 0 0 N N N 0.423 54.001 14.312 ? ? ? H153 6DO 57 6DO H171 H6 H 0 0 N N N 5.645 50.711 10.955 ? ? ? H171 6DO 58 6DO H172 H7 H 0 0 N N N 6.393 51.076 12.547 ? ? ? H172 6DO 59 6DO H203 H8 H 0 0 N N N 0.130 50.453 12.079 ? ? ? H203 6DO 60 6DO H202 H9 H 0 0 N N N 1.149 50.045 13.501 ? ? ? H202 6DO 61 6DO H201 H10 H 0 0 N N N -0.028 51.399 13.598 ? ? ? H201 6DO 62 6DO H212 H11 H 0 0 N N N 3.474 47.790 14.188 ? ? ? H212 6DO 63 6DO H211 H12 H 0 0 N N N 4.382 48.035 15.718 ? ? ? H211 6DO 64 6DO H011 H13 H 0 0 N N N 0.382 41.850 16.126 ? ? ? H011 6DO 65 6DO H021 H14 H 0 0 N N N 2.605 42.988 14.550 ? ? ? H021 6DO 66 6DO H031 H15 H 0 0 N N N 7.375 54.981 16.673 ? ? ? H031 6DO 67 6DO H051 H16 H 0 0 N N N 6.573 55.232 12.367 ? ? ? H051 6DO 68 6DO H061 H17 H 0 0 N N N 7.822 53.167 11.974 ? ? ? H061 6DO 69 6DO H071 H18 H 0 0 N N N 8.922 51.900 13.973 ? ? ? H071 6DO 70 6DO H081 H19 H 0 0 N N N 8.709 52.786 16.245 ? ? ? H081 6DO 71 6DO H092 H20 H 0 0 N N N 6.636 57.200 15.591 ? ? ? H092 6DO 72 6DO H091 H21 H 0 0 N N N 5.988 57.125 13.918 ? ? ? H091 6DO 73 6DO H121 H22 H 0 0 N N N 2.866 54.200 12.503 ? ? ? H121 6DO 74 6DO H141 H23 H 0 0 N N N 4.436 52.413 14.272 ? ? ? H141 6DO 75 6DO H162 H24 H 0 0 N N N 5.078 53.090 12.188 ? ? ? H162 6DO 76 6DO H161 H25 H 0 0 N N N 3.759 52.187 11.369 ? ? ? H161 6DO 77 6DO H182 H26 H 0 0 N N N 3.857 49.407 11.954 ? ? ? H182 6DO 78 6DO H181 H27 H 0 0 N N N 5.225 49.000 13.045 ? ? ? H181 6DO 79 6DO H241 H28 H 0 0 N N N 4.186 55.864 13.420 ? ? ? H241 6DO 80 6DO H291 H29 H 0 0 N N N -0.439 43.394 14.402 ? ? ? H291 6DO 81 6DO H301 H30 H 0 0 N N N 1.881 48.551 16.625 ? ? ? H301 6DO 82 6DO H311 H31 H 0 0 N N N 1.658 46.343 17.465 ? ? ? H311 6DO 83 6DO H331 H32 H 0 0 N N N 4.641 46.782 17.303 ? ? ? H331 6DO 84 6DO H342 H33 H 0 0 N N N 4.373 48.225 19.267 ? ? ? H342 6DO 85 6DO H343 H34 H 0 0 N N N 3.545 48.906 17.826 ? ? ? H343 6DO 86 6DO H341 H35 H 0 0 N N N 2.588 48.100 19.115 ? ? ? H341 6DO 87 6DO H351 H36 H 0 0 N N N 3.450 44.701 18.318 ? ? ? H351 6DO 88 6DO H352 H37 H 0 0 N N N 4.738 45.537 19.251 ? ? ? H352 6DO 89 6DO H361 H38 H 0 0 N N N 2.830 44.933 20.696 ? ? ? H361 6DO 90 6DO H363 H39 H 0 0 N N N 3.011 46.716 20.578 ? ? ? H363 6DO 91 6DO H362 H40 H 0 0 N N N 1.724 45.880 19.645 ? ? ? H362 6DO 92 6DO H391 H41 H 0 0 N N N 0.945 40.232 17.642 ? ? ? H391 6DO 93 6DO H411 H42 H 0 0 N N N 1.754 40.287 19.881 ? ? ? H411 6DO 94 6DO H421 H43 H 0 0 N N N 1.579 42.729 20.377 ? ? ? H421 6DO 95 6DO H423 H44 H 0 0 N N N 1.816 43.095 18.635 ? ? ? H423 6DO 96 6DO H422 H45 H 0 0 N N N 0.355 42.199 19.174 ? ? ? H422 6DO 97 6DO H432 H46 H 0 0 N N N 3.776 41.576 20.568 ? ? ? H432 6DO 98 6DO H431 H47 H 0 0 N N N 4.196 40.198 19.496 ? ? ? H431 6DO 99 6DO H433 H48 H 0 0 N N N 4.172 41.870 18.841 ? ? ? H433 6DO 100 6DO H452 H49 H 0 0 N N N 2.691 38.649 18.327 ? ? ? H452 6DO 101 6DO H482 H51 H 0 0 N N N 0.903 45.296 13.505 ? ? ? H482 6DO 102 6DO H481 H52 H 0 0 N N N 1.892 44.149 12.540 ? ? ? H481 6DO 103 6DO H483 H53 H 0 0 N N N 0.150 44.369 12.164 ? ? ? H483 6DO 104 6DO H493 H54 H 0 0 N N N 0.286 41.072 13.890 ? ? ? H493 6DO 105 6DO H491 H55 H 0 0 N N N -0.208 41.926 12.389 ? ? ? H491 6DO 106 6DO H492 H56 H 0 0 N N N 1.535 41.706 12.765 ? ? ? H492 6DO 107 6DO H1 H57 H 0 1 N N N 3.596 58.838 16.864 ? ? ? H1 6DO 108 6DO H403 H58 H 0 0 N N N 2.804 37.710 16.136 ? ? ? H403 6DO 109 6DO H401 H59 H 0 0 N N N 1.179 38.382 16.505 ? ? ? H401 6DO 110 6DO H402 H60 H 0 0 N N N 2.330 39.319 15.493 ? ? ? H402 6DO 111 6DO H321 H61 H 0 0 N N N -0.775 47.709 14.556 ? ? ? H321 6DO 112 6DO H323 H62 H 0 0 N N N -0.394 47.905 16.301 ? ? ? H323 6DO 113 6DO H322 H63 H 0 0 N N N 0.154 49.141 15.118 ? ? ? H322 6DO 114 6DO H371 H64 H 0 0 N N N 4.767 45.906 15.716 ? ? ? H371 6DO 115 6DO H372 H65 H 0 0 N N N 4.449 44.140 15.802 ? ? ? H372 6DO 116 6DO H373 H66 H 0 0 N N N 3.960 45.071 14.346 ? ? ? H373 6DO 117 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6DO C17 C16 SING N N 1 6DO C17 C18 SING N N 2 6DO C16 C14 SING N N 3 6DO O26 C20 SING N N 4 6DO O26 C13 SING N N 5 6DO C18 N25 SING N N 6 6DO C48 C29 SING N N 7 6DO C06 C05 DOUB Y N 8 6DO C06 C07 SING Y N 9 6DO C05 C04 SING Y N 10 6DO C49 C29 SING N N 11 6DO C15 C12 SING N N 12 6DO C12 C13 SING N N 13 6DO C12 C11 SING N N 14 6DO C14 C13 SING N N 15 6DO C14 N25 SING N N 16 6DO N25 C19 SING N N 17 6DO C29 C02 SING N N 18 6DO C07 C08 DOUB Y N 19 6DO N24 C11 SING N N 20 6DO N24 C10 SING N N 21 6DO C04 C09 SING N N 22 6DO C04 C03 DOUB Y N 23 6DO C11 O27 DOUB N N 24 6DO C09 C10 SING N N 25 6DO O52 C50 DOUB N N 26 6DO C19 C21 SING N N 27 6DO C19 O28 DOUB N N 28 6DO C02 C22 SING N N 29 6DO C02 N01 SING N N 30 6DO O46 C32 SING N N 31 6DO O46 C30 SING N N 32 6DO C21 C30 SING N N 33 6DO C10 C50 SING N N 34 6DO C08 C03 SING Y N 35 6DO C37 N44 SING N N 36 6DO C50 O51 SING N N 37 6DO C22 N44 SING N N 38 6DO C22 O23 DOUB N N 39 6DO N01 C38 SING N N 40 6DO C30 C31 SING N N 41 6DO N44 C31 SING N N 42 6DO C40 N45 SING N N 43 6DO O47 C38 DOUB N N 44 6DO C38 C39 SING N N 45 6DO C31 C33 SING N N 46 6DO N45 C39 SING N N 47 6DO C39 C41 SING N N 48 6DO C33 C34 SING N N 49 6DO C33 C35 SING N N 50 6DO C35 C36 SING N N 51 6DO C41 C42 SING N N 52 6DO C41 C43 SING N N 53 6DO C10 H101 SING N N 54 6DO C13 H131 SING N N 55 6DO C15 H151 SING N N 56 6DO C15 H152 SING N N 57 6DO C15 H153 SING N N 58 6DO C17 H171 SING N N 59 6DO C17 H172 SING N N 60 6DO C20 H203 SING N N 61 6DO C20 H202 SING N N 62 6DO C20 H201 SING N N 63 6DO C21 H212 SING N N 64 6DO C21 H211 SING N N 65 6DO N01 H011 SING N N 66 6DO C02 H021 SING N N 67 6DO C03 H031 SING N N 68 6DO C05 H051 SING N N 69 6DO C06 H061 SING N N 70 6DO C07 H071 SING N N 71 6DO C08 H081 SING N N 72 6DO C09 H092 SING N N 73 6DO C09 H091 SING N N 74 6DO C12 H121 SING N N 75 6DO C14 H141 SING N N 76 6DO C16 H162 SING N N 77 6DO C16 H161 SING N N 78 6DO C18 H182 SING N N 79 6DO C18 H181 SING N N 80 6DO N24 H241 SING N N 81 6DO C29 H291 SING N N 82 6DO C30 H301 SING N N 83 6DO C31 H311 SING N N 84 6DO C33 H331 SING N N 85 6DO C34 H342 SING N N 86 6DO C34 H343 SING N N 87 6DO C34 H341 SING N N 88 6DO C35 H351 SING N N 89 6DO C35 H352 SING N N 90 6DO C36 H361 SING N N 91 6DO C36 H363 SING N N 92 6DO C36 H362 SING N N 93 6DO C39 H391 SING N N 94 6DO C41 H411 SING N N 95 6DO C42 H421 SING N N 96 6DO C42 H423 SING N N 97 6DO C42 H422 SING N N 98 6DO C43 H432 SING N N 99 6DO C43 H431 SING N N 100 6DO C43 H433 SING N N 101 6DO N45 H452 SING N N 102 6DO C48 H482 SING N N 103 6DO C48 H481 SING N N 104 6DO C48 H483 SING N N 105 6DO C49 H493 SING N N 106 6DO C49 H491 SING N N 107 6DO C49 H492 SING N N 108 6DO O51 H1 SING N N 109 6DO C40 H403 SING N N 110 6DO C40 H401 SING N N 111 6DO C40 H402 SING N N 112 6DO C32 H321 SING N N 113 6DO C32 H323 SING N N 114 6DO C32 H322 SING N N 115 6DO C37 H371 SING N N 116 6DO C37 H372 SING N N 117 6DO C37 H373 SING N N 118 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6DO InChI InChI 1.03 "InChI=1S/C39H65N5O8/c1-12-25(6)34(43(9)38(48)33(24(4)5)42-37(47)32(40-8)23(2)3)30(51-10)22-31(45)44-20-16-19-29(44)35(52-11)26(7)36(46)41-28(39(49)50)21-27-17-14-13-15-18-27/h13-15,17-18,23-26,28-30,32-35,40H,12,16,19-22H2,1-11H3,(H,41,46)(H,42,47)(H,49,50)/t25-,26+,28-,29-,30+,32-,33-,34-,35+/m0/s1" 6DO InChIKey InChI 1.03 MFRNYXJJRJQHNW-DEMKXPNLSA-N 6DO SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)[C@@H]([C@@H](CC(=O)N1CCC[C@H]1[C@H](OC)[C@@H](C)C(=O)N[C@@H](Cc2ccccc2)C(O)=O)OC)N(C)C(=O)[C@@H](NC(=O)[C@@H](NC)C(C)C)C(C)C" 6DO SMILES CACTVS 3.385 "CC[CH](C)[CH]([CH](CC(=O)N1CCC[CH]1[CH](OC)[CH](C)C(=O)N[CH](Cc2ccccc2)C(O)=O)OC)N(C)C(=O)[CH](NC(=O)[CH](NC)C(C)C)C(C)C" 6DO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CC[C@H](C)[C@@H]([C@@H](CC(=O)N1CCC[C@H]1[C@@H]([C@@H](C)C(=O)N[C@@H](Cc2ccccc2)C(=O)O)OC)OC)N(C)C(=O)[C@H](C(C)C)NC(=O)[C@H](C(C)C)NC" 6DO SMILES "OpenEye OEToolkits" 2.0.5 "CCC(C)C(C(CC(=O)N1CCCC1C(C(C)C(=O)NC(Cc2ccccc2)C(=O)O)OC)OC)N(C)C(=O)C(C(C)C)NC(=O)C(C(C)C)NC" # _pdbx_chem_comp_identifier.comp_id 6DO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.5 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(2~{R},3~{R})-3-methoxy-3-[(2~{S})-1-[(3~{R},4~{S},5~{S})-3-methoxy-5-methyl-4-[methyl-[(2~{S})-3-methyl-2-[[(2~{S})-3-methyl-2-(methylamino)butanoyl]amino]butanoyl]amino]heptanoyl]pyrrolidin-2-yl]-2-methyl-propanoyl]amino]-3-phenyl-propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6DO "Create component" 2016-03-30 EBI 6DO "Initial release" 2016-08-17 RCSB ##