data_6FM # _chem_comp.id 6FM _chem_comp.name ;2'-deoxy-4'-ethynyl-2-fluoroadenosine 5'-(dihydrogen phosphate) ; _chem_comp.type "DNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H13 F N5 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-03-30 _chem_comp.pdbx_modified_date 2016-07-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 373.234 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6FM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5J2N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6FM C4 C1 C 0 1 Y N N 42.940 6.454 -27.970 3.018 -0.150 0.066 C4 6FM 1 6FM N3 N1 N 0 1 Y N N 41.808 6.145 -27.385 3.822 0.886 0.286 N3 6FM 2 6FM C2 C2 C 0 1 Y N N 40.694 6.033 -28.105 5.128 0.718 0.366 C2 6FM 3 6FM F32 F1 F 0 1 N N N 39.523 5.710 -27.484 5.910 1.796 0.590 F32 6FM 4 6FM N1 N2 N 0 1 Y N N 40.707 6.232 -29.431 5.699 -0.468 0.235 N1 6FM 5 6FM C6 C3 C 0 1 Y N N 41.826 6.548 -30.078 4.974 -1.560 0.014 C6 6FM 6 6FM N6 N3 N 0 1 N N N 41.828 6.762 -31.515 5.581 -2.796 -0.121 N6 6FM 7 6FM C5 C4 C 0 1 Y N N 42.982 6.666 -29.343 3.578 -1.429 -0.086 C5 6FM 8 6FM N7 N4 N 0 1 Y N N 44.360 6.978 -29.613 2.554 -2.291 -0.300 N7 6FM 9 6FM C8 C5 C 0 1 Y N N 44.969 6.917 -28.402 1.430 -1.636 -0.300 C8 6FM 10 6FM N9 N5 N 0 1 Y N N 44.087 6.626 -27.607 1.663 -0.312 -0.067 N9 6FM 11 6FM "C1'" C6 C 0 1 N N R 44.405 6.484 -26.236 0.651 0.745 0.010 "C1'" 6FM 12 6FM "C2'" C7 C 0 1 N N N 44.635 5.036 -25.918 0.480 1.438 -1.366 "C2'" 6FM 13 6FM "C3'" C8 C 0 1 N N S 46.073 4.915 -25.762 -0.959 1.999 -1.270 "C3'" 6FM 14 6FM "O3'" O1 O 0 1 N N N 46.388 3.915 -24.743 -0.935 3.378 -0.897 "O3'" 6FM 15 6FM "C4'" C9 C 0 1 N N R 46.574 6.257 -25.368 -1.621 1.153 -0.166 "C4'" 6FM 16 6FM C33 C10 C 0 1 N N N 46.618 6.382 -23.862 -2.006 2.016 0.963 C33 6FM 17 6FM C34 C11 C 0 1 N N N 46.655 6.483 -22.680 -2.312 2.704 1.864 C34 6FM 18 6FM "O4'" O2 O 0 1 N N N 45.652 7.250 -25.914 -0.653 0.183 0.268 "O4'" 6FM 19 6FM "C5'" C12 C 0 1 N N N 47.970 6.477 -25.949 -2.858 0.445 -0.723 "C5'" 6FM 20 6FM "O5'" O3 O 0 1 N N N 48.600 7.526 -25.274 -3.530 -0.243 0.334 "O5'" 6FM 21 6FM PA P1 P 0 1 N N N 49.633 8.487 -26.127 -4.876 -1.098 0.107 PA 6FM 22 6FM OP3 O4 O 0 1 N N N 51.041 8.697 -25.298 -5.279 -1.837 1.479 OP3 6FM 23 6FM OP2 O5 O 0 1 N N N 49.876 7.954 -27.465 -6.068 -0.113 -0.343 OP2 6FM 24 6FM H1 H1 H 0 1 N N N 40.903 6.634 -31.873 6.545 -2.873 -0.054 H1 6FM 25 6FM H2 H2 H 0 1 N N N 42.136 7.693 -31.713 5.041 -3.586 -0.283 H2 6FM 26 6FM H3 H3 H 0 1 N N N 46.013 7.089 -28.186 0.456 -2.077 -0.448 H3 6FM 27 6FM H4 H4 H 0 1 N N N 43.581 6.862 -25.613 0.917 1.473 0.776 H4 6FM 28 6FM H5 H5 H 0 1 N N N 44.119 4.757 -24.987 1.204 2.243 -1.489 H5 6FM 29 6FM H6 H6 H 0 1 N N N 44.279 4.397 -26.740 0.563 0.715 -2.178 H6 6FM 30 6FM H7 H7 H 0 1 N N N 46.528 4.623 -26.720 -1.484 1.868 -2.217 H7 6FM 31 6FM H8 H8 H 0 1 N N N 47.331 3.844 -24.649 -0.477 3.949 -1.530 H8 6FM 32 6FM H9 H9 H 0 1 N N N 46.688 6.573 -21.624 -2.586 3.320 2.669 H9 6FM 33 6FM H10 H10 H 0 1 N N N 48.564 5.558 -25.833 -3.530 1.181 -1.163 H10 6FM 34 6FM H11 H11 H 0 1 N N N 47.887 6.727 -27.017 -2.553 -0.271 -1.486 H11 6FM 35 6FM HOP3 H12 H 0 0 N N N 50.852 9.044 -24.434 -6.083 -2.371 1.417 H12 6FM 36 6FM HOP2 H13 H 0 0 N N N 49.048 7.844 -27.918 -6.273 0.576 0.303 H13 6FM 37 6FM OP1 O6 O 0 1 N Y N ? ? ? -4.646 -2.109 -0.949 OP1 6FM 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6FM N6 C6 SING N N 1 6FM C6 N1 DOUB Y N 2 6FM C6 C5 SING Y N 3 6FM N7 C5 SING Y N 4 6FM N7 C8 DOUB Y N 5 6FM N1 C2 SING Y N 6 6FM C5 C4 DOUB Y N 7 6FM C8 N9 SING Y N 8 6FM C2 F32 SING N N 9 6FM C2 N3 DOUB Y N 10 6FM C4 N9 SING Y N 11 6FM C4 N3 SING Y N 12 6FM N9 "C1'" SING N N 13 6FM OP2 PA SING N N 14 6FM "C1'" "C2'" SING N N 15 6FM "C1'" "O4'" SING N N 16 6FM PA OP3 SING N N 17 6FM PA "O5'" SING N N 18 6FM "C5'" "C4'" SING N N 19 6FM "C5'" "O5'" SING N N 20 6FM "C2'" "C3'" SING N N 21 6FM "O4'" "C4'" SING N N 22 6FM "C3'" "C4'" SING N N 23 6FM "C3'" "O3'" SING N N 24 6FM "C4'" C33 SING N N 25 6FM C33 C34 TRIP N N 26 6FM N6 H1 SING N N 27 6FM N6 H2 SING N N 28 6FM C8 H3 SING N N 29 6FM "C1'" H4 SING N N 30 6FM "C2'" H5 SING N N 31 6FM "C2'" H6 SING N N 32 6FM "C3'" H7 SING N N 33 6FM "O3'" H8 SING N N 34 6FM C34 H9 SING N N 35 6FM "C5'" H10 SING N N 36 6FM "C5'" H11 SING N N 37 6FM OP3 HOP3 SING N N 38 6FM OP2 HOP2 SING N N 39 6FM PA OP1 DOUB N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6FM SMILES ACDLabs 12.01 "c21n(cnc1c(nc(n2)F)N)C3CC(C(C#C)(O3)COP(O)(=O)O)O" 6FM InChI InChI 1.03 "InChI=1S/C12H13FN5O6P/c1-2-12(4-23-25(20,21)22)6(19)3-7(24-12)18-5-15-8-9(14)16-11(13)17-10(8)18/h1,5-7,19H,3-4H2,(H2,14,16,17)(H2,20,21,22)/t6-,7+,12+/m0/s1" 6FM InChIKey InChI 1.03 MAIQRKKYFLNZMS-QRPMWFLTSA-N 6FM SMILES_CANONICAL CACTVS 3.385 "Nc1nc(F)nc2n(cnc12)[C@H]3C[C@H](O)[C@@](CO[P](O)(O)=O)(O3)C#C" 6FM SMILES CACTVS 3.385 "Nc1nc(F)nc2n(cnc12)[CH]3C[CH](O)[C](CO[P](O)(O)=O)(O3)C#C" 6FM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C#C[C@]1([C@H](C[C@@H](O1)n2cnc3c2nc(nc3N)F)O)COP(=O)(O)O" 6FM SMILES "OpenEye OEToolkits" 2.0.4 "C#CC1(C(CC(O1)n2cnc3c2nc(nc3N)F)O)COP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6FM "SYSTEMATIC NAME" ACDLabs 12.01 ;2'-deoxy-4'-ethynyl-2-fluoroadenosine 5'-(dihydrogen phosphate) ; 6FM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(2~{R},3~{S},5~{R})-5-(6-azanyl-2-fluoranyl-purin-9-yl)-2-ethynyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6FM "Create component" 2016-03-30 RCSB 6FM "Initial release" 2016-08-03 RCSB #