data_6H7 # _chem_comp.id 6H7 _chem_comp.name "(1S,4R,5S,6S)-3-{[(3S,5S)-5-carbamoylpyrrolidin-3-yl]sulfanyl}-6-[(1R)-1-hydroxyethyl]-4-methyl-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H21 N3 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ertapenem _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-08-05 _chem_comp.pdbx_modified_date 2022-07-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 355.409 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6H7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RPC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6H7 C C1 C 0 1 N N N 31.983 -3.072 4.097 5.867 0.447 -0.150 C 6H7 1 6H7 N N1 N 0 1 N N N 33.683 -3.349 6.008 3.827 -0.302 -1.304 N 6H7 2 6H7 O O1 O 0 1 N N N 32.012 -1.891 3.731 6.166 -0.724 -0.049 O 6H7 3 6H7 CA C2 C 0 1 N N S 32.272 -3.510 5.565 4.487 0.836 -0.615 CA 6H7 4 6H7 CAE C3 C 0 1 N N R 37.039 0.733 12.458 -4.989 1.104 -0.573 CAE 6H7 5 6H7 CAF C4 C 0 1 N N N 37.070 2.051 13.254 -6.184 0.891 0.358 CAF 6H7 6 6H7 CAH C5 C 0 1 N N R 34.488 -1.153 10.198 -1.233 1.286 0.033 CAH 6H7 7 6H7 CAL C6 C 0 1 N N N 32.978 0.595 10.626 -1.105 -1.035 -0.090 CAL 6H7 8 6H7 CAM C7 C 0 1 N N N 31.919 1.632 10.610 -0.636 -2.363 0.045 CAM 6H7 9 6H7 NAX N2 N 0 1 N N N 31.660 -4.026 3.190 6.767 1.402 0.160 NAX 6H7 10 6H7 CB C8 C 0 1 N N N 31.479 -2.744 6.639 3.558 1.105 0.595 CB 6H7 11 6H7 CG C9 C 0 1 N N S 32.403 -2.544 7.842 2.148 0.860 0.010 CG 6H7 12 6H7 CD C10 C 0 1 N N N 33.763 -2.417 7.171 2.374 -0.035 -1.223 CD 6H7 13 6H7 SAK S1 S 0 1 N N N 31.926 -1.227 8.955 1.104 0.011 1.220 SAK 6H7 14 6H7 CAI C11 C 0 1 N N N 33.115 -0.557 9.934 -0.439 0.044 0.369 CAI 6H7 15 6H7 CAS C12 C 0 1 N N N 34.370 -2.358 11.118 -1.670 2.003 1.312 CAS 6H7 16 6H7 OAU O2 O 0 1 N N N 30.885 1.460 9.939 -1.243 -3.279 -0.479 OAU 6H7 17 6H7 OAT O3 O 0 1 N N N 32.074 2.694 11.261 0.485 -2.614 0.754 OAT 6H7 18 6H7 NAJ N3 N 0 1 N N N 34.091 0.635 11.354 -2.317 -0.695 -0.715 NAJ 6H7 19 6H7 CAD C13 C 0 1 N N S 35.280 -0.013 10.853 -2.458 0.760 -0.734 CAD 6H7 20 6H7 CAB C14 C 0 1 N N S 35.688 0.007 12.351 -3.716 0.597 0.107 CAB 6H7 21 6H7 CAA C15 C 0 1 N N N 34.469 0.846 12.599 -3.477 -0.874 -0.066 CAA 6H7 22 6H7 OAC O4 O 0 1 N N N 34.040 1.435 13.580 -4.103 -1.860 0.261 OAC 6H7 23 6H7 OAG O5 O 0 1 N N N 38.003 -0.199 12.971 -4.852 2.497 -0.861 OAG 6H7 24 6H7 H1 H1 H 0 1 N N N 34.048 -4.241 6.275 4.129 -0.368 -2.264 H1 6H7 25 6H7 H3 H3 H 0 1 N N N 32.004 -4.574 5.649 4.534 1.707 -1.269 H3 6H7 26 6H7 H4 H4 H 0 1 N N N 37.337 0.986 11.430 -5.148 0.555 -1.501 H4 6H7 27 6H7 H5 H5 H 0 1 N N N 38.092 2.459 13.249 -7.091 1.253 -0.126 H5 6H7 28 6H7 H6 H6 H 0 1 N N N 36.384 2.775 12.791 -6.288 -0.171 0.578 H6 6H7 29 6H7 H7 H7 H 0 1 N N N 36.757 1.860 14.291 -6.024 1.440 1.286 H7 6H7 30 6H7 H8 H8 H 0 1 N N N 34.964 -1.445 9.250 -0.648 1.955 -0.597 H8 6H7 31 6H7 H9 H9 H 0 1 N N N 31.451 -3.769 2.247 6.527 2.338 0.083 H9 6H7 32 6H7 H10 H10 H 0 1 N N N 31.631 -4.987 3.464 7.655 1.152 0.459 H10 6H7 33 6H7 H11 H11 H 0 1 N N N 31.160 -1.768 6.245 3.766 0.405 1.405 H11 6H7 34 6H7 H12 H12 H 0 1 N N N 30.594 -3.325 6.938 3.660 2.135 0.938 H12 6H7 35 6H7 H13 H13 H 0 1 N N N 32.394 -3.463 8.446 1.692 1.805 -0.286 H13 6H7 36 6H7 H14 H14 H 0 1 N N N 34.567 -2.718 7.858 2.041 0.481 -2.123 H14 6H7 37 6H7 H15 H15 H 0 1 N N N 33.937 -1.385 6.833 1.830 -0.972 -1.106 H15 6H7 38 6H7 H16 H16 H 0 1 N N N 35.369 -2.780 11.301 -2.107 1.281 2.002 H16 6H7 39 6H7 H17 H17 H 0 1 N N N 33.923 -2.047 12.074 -0.804 2.474 1.778 H17 6H7 40 6H7 H18 H18 H 0 1 N N N 33.732 -3.119 10.645 -2.410 2.765 1.067 H18 6H7 41 6H7 H19 H19 H 0 1 N N N 31.318 3.256 11.136 0.770 -3.538 0.725 H19 6H7 42 6H7 H20 H20 H 0 1 N N N 35.928 0.566 10.179 -2.602 1.209 -1.716 H20 6H7 43 6H7 H21 H21 H 0 1 N N N 35.671 -0.983 12.830 -3.610 0.947 1.134 H21 6H7 44 6H7 H22 H22 H 0 1 N N N 38.848 0.228 13.046 -4.707 3.048 -0.080 H22 6H7 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6H7 NAX C SING N N 1 6H7 O C DOUB N N 2 6H7 C CA SING N N 3 6H7 CA N SING N N 4 6H7 CA CB SING N N 5 6H7 N CD SING N N 6 6H7 CB CG SING N N 7 6H7 CD CG SING N N 8 6H7 CG SAK SING N N 9 6H7 SAK CAI SING N N 10 6H7 CAI CAH SING N N 11 6H7 CAI CAL DOUB N N 12 6H7 OAU CAM DOUB N N 13 6H7 CAH CAD SING N N 14 6H7 CAH CAS SING N N 15 6H7 CAM CAL SING N N 16 6H7 CAM OAT SING N N 17 6H7 CAL NAJ SING N N 18 6H7 CAD NAJ SING N N 19 6H7 CAD CAB SING N N 20 6H7 NAJ CAA SING N N 21 6H7 CAB CAE SING N N 22 6H7 CAB CAA SING N N 23 6H7 CAE OAG SING N N 24 6H7 CAE CAF SING N N 25 6H7 CAA OAC DOUB N N 26 6H7 N H1 SING N N 27 6H7 CA H3 SING N N 28 6H7 CAE H4 SING N N 29 6H7 CAF H5 SING N N 30 6H7 CAF H6 SING N N 31 6H7 CAF H7 SING N N 32 6H7 CAH H8 SING N N 33 6H7 NAX H9 SING N N 34 6H7 NAX H10 SING N N 35 6H7 CB H11 SING N N 36 6H7 CB H12 SING N N 37 6H7 CG H13 SING N N 38 6H7 CD H14 SING N N 39 6H7 CD H15 SING N N 40 6H7 CAS H16 SING N N 41 6H7 CAS H17 SING N N 42 6H7 CAS H18 SING N N 43 6H7 OAT H19 SING N N 44 6H7 CAD H20 SING N N 45 6H7 CAB H21 SING N N 46 6H7 OAG H22 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6H7 SMILES ACDLabs 12.01 "OC(C)C1C(=O)N2C(=C(SC3CC(NC3)C(N)=O)C(C)C12)C(=O)O" 6H7 InChI InChI 1.03 "InChI=1S/C15H21N3O5S/c1-5-10-9(6(2)19)14(21)18(10)11(15(22)23)12(5)24-7-3-8(13(16)20)17-4-7/h5-10,17,19H,3-4H2,1-2H3,(H2,16,20)(H,22,23)/t5-,6-,7+,8+,9-,10-/m1/s1" 6H7 InChIKey InChI 1.03 PYMGGHYWYIWWQW-NRNPDCPVSA-N 6H7 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@@H]1[C@H]2[C@@H](C)C(=C(N2C1=O)C(O)=O)S[C@@H]3CN[C@@H](C3)C(N)=O" 6H7 SMILES CACTVS 3.385 "C[CH](O)[CH]1[CH]2[CH](C)C(=C(N2C1=O)C(O)=O)S[CH]3CN[CH](C3)C(N)=O" 6H7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@@H]2[C@H](C(=O)N2C(=C1S[C@H]3C[C@H](NC3)C(=O)N)C(=O)O)[C@@H](C)O" 6H7 SMILES "OpenEye OEToolkits" 2.0.7 "CC1C2C(C(=O)N2C(=C1SC3CC(NC3)C(=O)N)C(=O)O)C(C)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6H7 "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,4R,5S,6S)-3-{[(3S,5S)-5-carbamoylpyrrolidin-3-yl]sulfanyl}-6-[(1R)-1-hydroxyethyl]-4-methyl-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid" 6H7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{R},5~{S},6~{S})-3-[(3~{S},5~{S})-5-aminocarbonylpyrrolidin-3-yl]sulfanyl-4-methyl-6-[(1~{R})-1-oxidanylethyl]-7-oxidanylidene-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6H7 "Create component" 2021-08-05 RCSB 6H7 "Initial release" 2022-07-06 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 6H7 _pdbx_chem_comp_synonyms.name ertapenem _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #