data_6HA # _chem_comp.id 6HA _chem_comp.name "1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(ADENIN-9-YL)-6'-O-PHOSPHORYL-D-ARABINO-HEXITOL" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H16 N5 O6 P" _chem_comp.mon_nstd_parent_comp_id DA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-23 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 345.248 _chem_comp.one_letter_code A _chem_comp.three_letter_code 6HA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EJZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6HA P P P 0 1 N N N -263.933 86.612 -266.875 0.869 -0.126 -4.635 P 6HA 1 6HA OP1 O1P O 0 1 N N N -262.580 87.206 -266.812 2.120 0.412 -4.057 OP1 6HA 2 6HA OP2 O2P O 0 1 N N N -264.233 85.374 -266.122 1.221 -1.301 -5.677 OP2 6HA 3 6HA OP3 O3P O 0 1 N Y N -264.996 87.735 -266.437 0.080 1.050 -5.400 OP3 6HA 4 6HA "O5'" O5* O 0 1 N N N -264.308 86.371 -268.421 -0.056 -0.714 -3.456 "O5'" 6HA 5 6HA "C5'" C5* C 0 1 N N N -265.560 85.772 -268.802 -0.333 0.370 -2.569 "C5'" 6HA 6 6HA "C4'" C4* C 0 1 N N R -265.855 85.990 -270.273 -1.214 -0.123 -1.419 "C4'" 6HA 7 6HA "O4'" O4* O 0 1 N N N -266.009 87.407 -270.520 -0.533 -1.156 -0.710 "O4'" 6HA 8 6HA "C3'" C3* C 0 1 N N S -264.716 85.396 -271.106 -1.516 1.041 -0.474 "C3'" 6HA 9 6HA "O3'" O3* O 0 1 N N N -264.709 83.976 -271.000 -2.173 2.085 -1.196 "O3'" 6HA 10 6HA "C2'" C2* C 0 1 N N N -264.840 85.811 -272.560 -2.426 0.546 0.657 "C2'" 6HA 11 6HA "C1'" C1* C 0 1 N N S -264.884 87.317 -272.682 -1.770 -0.674 1.312 "C1'" 6HA 12 6HA "C6'" C6* C 0 1 N N N -266.096 87.808 -271.899 -1.449 -1.709 0.232 "C6'" 6HA 13 6HA N9 N9 N 0 1 Y N N -263.639 87.905 -272.139 -0.533 -0.265 1.982 N9 6HA 14 6HA C8 C8 C 0 1 Y N N -263.251 88.071 -270.847 0.595 0.200 1.377 C8 6HA 15 6HA N7 N7 N 0 1 Y N N -262.090 88.585 -270.632 1.501 0.469 2.272 N7 6HA 16 6HA C5 C5 C 0 1 Y N N -261.632 88.792 -271.933 1.010 0.199 3.505 C5 6HA 17 6HA C6 C6 C 0 1 Y N N -260.445 89.319 -272.439 1.520 0.283 4.812 C6 6HA 18 6HA N6 N6 N 0 1 N N N -259.450 89.749 -271.665 2.805 0.743 5.042 N6 6HA 19 6HA N1 N1 N 0 1 Y N N -260.317 89.382 -273.773 0.737 -0.083 5.822 N1 6HA 20 6HA C2 C2 C 0 1 Y N N -261.297 88.951 -274.570 -0.489 -0.523 5.611 C2 6HA 21 6HA N3 N3 N 0 1 Y N N -262.464 88.435 -274.199 -1.006 -0.624 4.405 N3 6HA 22 6HA C4 C4 C 0 1 Y N N -262.569 88.383 -272.857 -0.299 -0.280 3.334 C4 6HA 23 6HA HOP2 2HOP H 0 0 N N N -265.102 84.992 -266.162 1.775 -0.908 -6.365 HOP2 6HA 24 6HA HOP3 3HOP H 0 0 N N N -265.865 87.353 -266.477 -0.726 0.657 -5.761 HOP3 6HA 25 6HA "H5'" 1H5* H 0 1 N N N -265.514 84.703 -268.644 -0.853 1.159 -3.111 "H5'" 6HA 26 6HA "H5''" 2H5* H 0 0 N N N -266.361 86.207 -268.185 0.601 0.760 -2.168 "H5''" 6HA 27 6HA "H4'" H4* H 0 1 N N N -266.784 85.477 -270.529 -2.148 -0.515 -1.821 "H4'" 6HA 28 6HA "H3'" H3* H 0 1 N N N -263.771 85.776 -270.716 -0.584 1.420 -0.053 "H3'" 6HA 29 6HA "HO3'" HO3* H 0 0 N Y N -264.002 83.607 -271.516 -2.344 2.797 -0.565 "HO3'" 6HA 30 6HA "H2'" 1H2* H 0 1 N N N -263.973 85.434 -273.111 -3.397 0.265 0.249 "H2'" 6HA 31 6HA "H2''" 2H2* H 0 0 N N N -265.764 85.391 -272.971 -2.553 1.336 1.397 "H2''" 6HA 32 6HA "H1'" H1* H 0 1 N N N -264.990 87.595 -273.731 -2.454 -1.108 2.042 "H1'" 6HA 33 6HA "H6'1" 1H6* H 0 0 N N N -266.146 88.892 -271.955 -1.005 -2.590 0.695 "H6'1" 6HA 34 6HA "H6'2" 2H6* H 0 0 N N N -267.001 87.397 -272.339 -2.368 -1.995 -0.280 "H6'2" 6HA 35 6HA H8 H8 H 0 1 N N N -263.893 87.769 -270.023 0.720 0.326 0.311 H8 6HA 36 6HA H61 1H6 H 0 1 N N N -259.537 89.701 -270.660 3.144 0.800 5.949 H61 6HA 37 6HA H62 2H6 H 0 1 N N N -258.610 90.128 -272.082 3.367 1.004 4.297 H62 6HA 38 6HA H2 H2 H 0 1 N N N -261.123 89.034 -275.643 -1.091 -0.811 6.461 H2 6HA 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6HA P OP1 DOUB N N 1 6HA P OP2 SING N N 2 6HA P OP3 SING N N 3 6HA P "O5'" SING N N 4 6HA OP2 HOP2 SING N N 5 6HA OP3 HOP3 SING N N 6 6HA "O5'" "C5'" SING N N 7 6HA "C5'" "C4'" SING N N 8 6HA "C5'" "H5'" SING N N 9 6HA "C5'" "H5''" SING N N 10 6HA "C4'" "O4'" SING N N 11 6HA "C4'" "C3'" SING N N 12 6HA "C4'" "H4'" SING N N 13 6HA "O4'" "C6'" SING N N 14 6HA "C3'" "O3'" SING N N 15 6HA "C3'" "C2'" SING N N 16 6HA "C3'" "H3'" SING N N 17 6HA "O3'" "HO3'" SING N N 18 6HA "C2'" "C1'" SING N N 19 6HA "C2'" "H2'" SING N N 20 6HA "C2'" "H2''" SING N N 21 6HA "C1'" "C6'" SING N N 22 6HA "C1'" N9 SING N N 23 6HA "C1'" "H1'" SING N N 24 6HA "C6'" "H6'1" SING N N 25 6HA "C6'" "H6'2" SING N N 26 6HA N9 C8 SING Y N 27 6HA N9 C4 SING Y N 28 6HA C8 N7 DOUB Y N 29 6HA C8 H8 SING N N 30 6HA N7 C5 SING Y N 31 6HA C5 C6 SING Y N 32 6HA C5 C4 DOUB Y N 33 6HA C6 N6 SING N N 34 6HA C6 N1 DOUB Y N 35 6HA N6 H61 SING N N 36 6HA N6 H62 SING N N 37 6HA N1 C2 SING Y N 38 6HA C2 N3 DOUB Y N 39 6HA C2 H2 SING N N 40 6HA N3 C4 SING Y N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6HA SMILES ACDLabs 10.04 "O=P(O)(O)OCC3OCC(n1cnc2c(ncnc12)N)CC3O" 6HA SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3CO[C@H](CO[P](O)(O)=O)[C@@H](O)C3" 6HA SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3CO[CH](CO[P](O)(O)=O)[CH](O)C3" 6HA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](OC3)COP(=O)(O)O)O)N" 6HA SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3CC(C(OC3)COP(=O)(O)O)O)N" 6HA InChI InChI 1.03 "InChI=1S/C11H16N5O6P/c12-10-9-11(14-4-13-10)16(5-15-9)6-1-7(17)8(21-2-6)3-22-23(18,19)20/h4-8,17H,1-3H2,(H2,12,13,14)(H2,18,19,20)/t6-,7-,8+/m0/s1" 6HA InChIKey InChI 1.03 YTRYYFQQGYRCHL-BIIVOSGPSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6HA "SYSTEMATIC NAME" ACDLabs 10.04 "2-(6-amino-9H-purin-9-yl)-1,5-anhydro-2,3-dideoxy-6-O-phosphono-D-arabino-hexitol" 6HA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5S)-5-(6-aminopurin-9-yl)-3-hydroxy-oxan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6HA "Create component" 1999-07-23 RCSB 6HA "Modify descriptor" 2011-06-04 RCSB #