data_6HC # _chem_comp.id 6HC _chem_comp.name "1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(CYTOSIN-1-YL)-6'-O-PHOSPHORYL-D-ARABINO-HEXITOL" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H16 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id DC _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-23 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 321.224 _chem_comp.one_letter_code C _chem_comp.three_letter_code 6HC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EJZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6HC P P P 0 1 N N N -256.017 100.102 -266.328 0.681 -0.101 4.079 P 6HC 1 6HC OP1 O1P O 0 1 N N N -256.003 99.958 -267.800 1.908 -0.727 3.540 OP1 6HC 2 6HC OP2 O2P O 0 1 N N N -254.874 99.620 -265.524 1.079 0.965 5.217 OP2 6HC 3 6HC OP3 O3P O 0 1 N Y N -256.254 101.655 -265.981 -0.265 -1.237 4.716 OP3 6HC 4 6HC "O5'" O5* O 0 1 N N N -257.357 99.420 -265.760 -0.105 0.648 2.891 "O5'" 6HC 5 6HC "C5'" C5* C 0 1 N N N -257.704 99.557 -264.372 -0.429 -0.346 1.918 "C5'" 6HC 6 6HC "C4'" C4* C 0 1 N N R -259.203 99.533 -264.148 -1.182 0.303 0.756 "C4'" 6HC 7 6HC "O4'" O4* O 0 1 N N N -259.826 100.594 -264.898 -0.360 1.304 0.158 "O4'" 6HC 8 6HC "C3'" C3* C 0 1 N N S -259.763 98.176 -264.564 -1.534 -0.765 -0.281 "C3'" 6HC 9 6HC "O3'" O3* O 0 1 N N N -259.227 97.150 -263.729 -2.335 -1.779 0.330 "O3'" 6HC 10 6HC "C2'" C2* C 0 1 N N N -261.281 98.184 -264.477 -2.318 -0.111 -1.427 "C2'" 6HC 11 6HC "C1'" C1* C 0 1 N N S -261.885 99.323 -265.285 -1.506 1.074 -1.959 "C1'" 6HC 12 6HC "C6'" C6* C 0 1 N N N -261.260 100.641 -264.821 -1.156 2.003 -0.795 "C6'" 6HC 13 6HC N1 N1 N 0 1 N N N -261.665 99.103 -266.735 -0.274 0.584 -2.583 N1 6HC 14 6HC C2 C2 C 0 1 N N N -262.740 98.646 -267.476 -0.343 -0.210 -3.667 C2 6HC 15 6HC O2 O2 O 0 1 N N N -263.820 98.439 -266.931 -1.434 -0.515 -4.119 O2 6HC 16 6HC N3 N3 N 0 1 N N N -262.568 98.444 -268.810 0.760 -0.669 -4.254 N3 6HC 17 6HC C4 C4 C 0 1 N N N -261.390 98.679 -269.396 1.959 -0.354 -3.782 C4 6HC 18 6HC N4 N4 N 0 1 N N N -261.263 98.464 -270.703 3.093 -0.834 -4.396 N4 6HC 19 6HC C5 C5 C 0 1 N N N -260.272 99.149 -268.639 2.066 0.472 -2.645 C5 6HC 20 6HC C6 C6 C 0 1 N N N -260.452 99.349 -267.320 0.934 0.936 -2.063 C6 6HC 21 6HC HOP2 2HOP H 0 0 N N N -254.883 99.712 -264.578 1.547 0.476 5.908 HOP2 6HC 22 6HC HOP3 3HOP H 0 0 N N N -256.263 101.747 -265.035 -1.051 -0.788 5.055 HOP3 6HC 23 6HC "H5'" 1H5* H 0 1 N N N -257.291 98.727 -263.815 -1.057 -1.111 2.375 "H5'" 6HC 24 6HC "H5''" 2H5* H 0 0 N N N -257.284 100.502 -263.998 0.487 -0.803 1.547 "H5''" 6HC 25 6HC "H4'" H4* H 0 1 N N N -259.401 99.684 -263.087 -2.098 0.762 1.129 "H4'" 6HC 26 6HC "H3'" H3* H 0 1 N N N -259.470 97.978 -265.596 -0.619 -1.209 -0.672 "H3'" 6HC 27 6HC "HO3'" HO3* H 0 0 N Y N -259.575 96.305 -263.988 -2.533 -2.430 -0.356 "HO3'" 6HC 28 6HC "H2'" 1H2* H 0 1 N N N -261.661 97.234 -264.867 -3.281 0.240 -1.058 "H2'" 6HC 29 6HC "H2''" 2H2* H 0 0 N N N -261.571 98.304 -263.429 -2.473 -0.838 -2.225 "H2''" 6HC 30 6HC "H1'" H1* H 0 1 N N N -262.959 99.359 -265.093 -2.096 1.619 -2.696 "H1'" 6HC 31 6HC "H6'1" 1H6* H 0 0 N N N -261.626 101.451 -265.447 -0.600 2.862 -1.172 "H6'1" 6HC 32 6HC "H6'2" 2H6* H 0 0 N N N -261.560 100.839 -263.794 -2.073 2.348 -0.318 "H6'2" 6HC 33 6HC H41 1H4 H 0 1 N N N -260.380 98.635 -271.159 3.016 -1.406 -5.176 H41 6HC 34 6HC H42 2H4 H 0 1 N N N -262.057 98.140 -271.240 3.968 -0.599 -4.052 H42 6HC 35 6HC H5 H5 H 0 1 N N N -259.310 99.344 -269.112 3.035 0.738 -2.249 H5 6HC 36 6HC H6 H6 H 0 1 N N N -259.622 99.711 -266.713 0.990 1.574 -1.193 H6 6HC 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6HC P OP1 DOUB N N 1 6HC P OP2 SING N N 2 6HC P OP3 SING N N 3 6HC P "O5'" SING N N 4 6HC OP2 HOP2 SING N N 5 6HC OP3 HOP3 SING N N 6 6HC "O5'" "C5'" SING N N 7 6HC "C5'" "C4'" SING N N 8 6HC "C5'" "H5'" SING N N 9 6HC "C5'" "H5''" SING N N 10 6HC "C4'" "O4'" SING N N 11 6HC "C4'" "C3'" SING N N 12 6HC "C4'" "H4'" SING N N 13 6HC "O4'" "C6'" SING N N 14 6HC "C3'" "O3'" SING N N 15 6HC "C3'" "C2'" SING N N 16 6HC "C3'" "H3'" SING N N 17 6HC "O3'" "HO3'" SING N N 18 6HC "C2'" "C1'" SING N N 19 6HC "C2'" "H2'" SING N N 20 6HC "C2'" "H2''" SING N N 21 6HC "C1'" "C6'" SING N N 22 6HC "C1'" N1 SING N N 23 6HC "C1'" "H1'" SING N N 24 6HC "C6'" "H6'1" SING N N 25 6HC "C6'" "H6'2" SING N N 26 6HC N1 C2 SING N N 27 6HC N1 C6 SING N N 28 6HC C2 O2 DOUB N N 29 6HC C2 N3 SING N N 30 6HC N3 C4 DOUB N N 31 6HC C4 N4 SING N N 32 6HC C4 C5 SING N N 33 6HC N4 H41 SING N N 34 6HC N4 H42 SING N N 35 6HC C5 C6 DOUB N N 36 6HC C5 H5 SING N N 37 6HC C6 H6 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6HC SMILES ACDLabs 10.04 "O=C1N=C(N)C=CN1C2CC(O)C(OC2)COP(=O)(O)O" 6HC SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C=C1)[C@@H]2CO[C@H](CO[P](O)(O)=O)[C@@H](O)C2" 6HC SMILES CACTVS 3.341 "NC1=NC(=O)N(C=C1)[CH]2CO[CH](CO[P](O)(O)=O)[CH](O)C2" 6HC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H](CO[C@@H]([C@H]1O)COP(=O)(O)O)N2C=CC(=NC2=O)N" 6HC SMILES "OpenEye OEToolkits" 1.5.0 "C1C(COC(C1O)COP(=O)(O)O)N2C=CC(=NC2=O)N" 6HC InChI InChI 1.03 "InChI=1S/C10H16N3O7P/c11-9-1-2-13(10(15)12-9)6-3-7(14)8(19-4-6)5-20-21(16,17)18/h1-2,6-8,14H,3-5H2,(H2,11,12,15)(H2,16,17,18)/t6-,7-,8+/m0/s1" 6HC InChIKey InChI 1.03 YMMHAKLJCAQJRS-BIIVOSGPSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6HC "SYSTEMATIC NAME" ACDLabs 10.04 "2-(4-amino-2-oxopyrimidin-1(2H)-yl)-1,5-anhydro-2,3-dideoxy-6-O-phosphono-D-arabino-hexitol" 6HC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5S)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6HC "Create component" 1999-07-23 RCSB 6HC "Modify descriptor" 2011-06-04 RCSB #