data_6HG # _chem_comp.id 6HG _chem_comp.name "1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(GUANIN-9-YL)-6'-O-PHOSPHORYL-D-ARABINO-HEXITOL" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H16 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-23 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 361.248 _chem_comp.one_letter_code G _chem_comp.three_letter_code 6HG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EJZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6HG P P P 0 1 N N N -259.023 95.664 -264.303 -0.774 0.199 -4.957 P 6HG 1 6HG OP1 O1P O 0 1 N N N -258.447 95.771 -265.663 -2.057 -0.318 -4.430 OP1 6HG 2 6HG OP2 O2P O 0 1 N N N -258.342 94.866 -263.262 -1.064 1.402 -5.987 OP2 6HG 3 6HG OP3 O3P O 0 1 N Y N -259.227 97.150 -263.729 0.008 -0.983 -5.720 OP3 6HG 4 6HG "O5'" O5* O 0 1 N N N -260.539 95.139 -264.429 0.127 0.741 -3.739 "O5'" 6HG 5 6HG "C5'" C5* C 0 1 N N N -261.359 94.994 -263.256 0.348 -0.366 -2.864 "C5'" 6HG 6 6HG "C4'" C4* C 0 1 N N R -262.825 94.818 -263.603 1.204 0.082 -1.678 "C4'" 6HG 7 6HG "O4'" O4* O 0 1 N N N -263.296 95.981 -264.311 0.527 1.119 -0.971 "O4'" 6HG 8 6HG "C3'" C3* C 0 1 N N S -263.003 93.547 -264.438 1.446 -1.107 -0.747 "C3'" 6HG 9 6HG "O3'" O3* O 0 1 N N N -262.717 92.398 -263.636 2.100 -2.153 -1.469 "O3'" 6HG 10 6HG "C2'" C2* C 0 1 N N N -264.418 93.458 -264.991 2.333 -0.656 0.421 "C2'" 6HG 11 6HG "C1'" C1* C 0 1 N N S -264.820 94.723 -265.733 1.687 0.567 1.079 "C1'" 6HG 12 6HG "C6'" C6* C 0 1 N N N -264.646 95.909 -264.791 1.426 1.631 0.010 "C6'" 6HG 13 6HG N9 N9 N 0 1 Y N N -263.991 94.900 -266.945 0.419 0.178 1.702 N9 6HG 14 6HG C8 C8 C 0 1 Y N N -262.720 95.363 -267.065 -0.702 -0.247 1.051 C8 6HG 15 6HG N7 N7 N 0 1 Y N N -262.208 95.407 -268.248 -1.640 -0.508 1.914 N7 6HG 16 6HG C5 C5 C 0 1 Y N N -263.257 94.917 -269.030 -1.178 -0.266 3.165 C5 6HG 17 6HG C6 C6 C 0 1 N N N -263.326 94.719 -270.432 -1.740 -0.370 4.460 C6 6HG 18 6HG O6 O6 O 0 1 N N N -262.461 94.935 -271.277 -2.888 -0.750 4.614 O6 6HG 19 6HG N1 N1 N 0 1 N N N -264.556 94.212 -270.813 -0.970 -0.043 5.521 N1 6HG 20 6HG C2 C2 C 0 1 N N N -265.598 93.931 -269.962 0.310 0.385 5.337 C2 6HG 21 6HG N2 N2 N 0 1 N N N -266.706 93.467 -270.527 1.066 0.716 6.433 N2 6HG 22 6HG N3 N3 N 0 1 N N N -265.549 94.111 -268.640 0.843 0.486 4.139 N3 6HG 23 6HG C4 C4 C 0 1 Y N N -264.353 94.605 -268.241 0.143 0.174 3.042 C4 6HG 24 6HG HOP2 2HOP H 0 0 N N N -258.711 94.797 -262.389 -1.606 1.035 -6.700 HOP2 6HG 25 6HG HOP3 3HOP H 0 0 N N N -259.596 97.081 -262.856 0.835 -0.604 -6.047 HOP3 6HG 26 6HG "H5'" 1H5* H 0 1 N N N -261.056 94.110 -262.713 0.865 -1.159 -3.406 "H5'" 6HG 27 6HG "H5''" 2H5* H 0 0 N N N -261.225 95.883 -262.622 -0.608 -0.740 -2.501 "H5''" 6HG 28 6HG "H4'" H4* H 0 1 N N N -263.394 94.711 -262.678 2.160 0.457 -2.043 "H4'" 6HG 29 6HG "H3'" H3* H 0 1 N N N -262.301 93.577 -265.272 0.493 -1.470 -0.363 "H3'" 6HG 30 6HG "HO3'" HO3* H 0 0 N Y N -262.827 91.609 -264.154 2.233 -2.881 -0.846 "HO3'" 6HG 31 6HG "H2'" 1H2* H 0 1 N N N -264.473 92.611 -265.684 3.323 -0.392 0.049 "H2'" 6HG 32 6HG "H2''" 2H2* H 0 0 N N N -265.110 93.306 -264.157 2.416 -1.463 1.149 "H2''" 6HG 33 6HG "H1'" H1* H 0 1 N N N -265.867 94.650 -266.026 2.357 0.970 1.838 "H1'" 6HG 34 6HG "H6'1" 1H6* H 0 0 N N N -264.890 96.827 -265.318 0.989 2.514 0.476 "H6'1" 6HG 35 6HG "H6'2" 2H6* H 0 0 N N N -265.325 95.803 -263.948 2.367 1.902 -0.467 "H6'2" 6HG 36 6HG H8 H8 H 0 1 N N N -262.155 95.696 -266.195 -0.797 -0.351 -0.019 H8 6HG 37 6HG H1 H1 H 0 1 N N N -264.676 94.042 -271.801 -1.333 -0.106 6.418 H1 6HG 38 6HG H21 1H2 H 0 1 N N N -266.744 93.330 -271.528 1.980 1.020 6.318 H21 6HG 39 6HG H22 2H2 H 0 1 N N N -267.512 93.258 -269.958 0.685 0.651 7.322 H22 6HG 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6HG P OP1 DOUB N N 1 6HG P OP2 SING N N 2 6HG P OP3 SING N N 3 6HG P "O5'" SING N N 4 6HG OP2 HOP2 SING N N 5 6HG OP3 HOP3 SING N N 6 6HG "O5'" "C5'" SING N N 7 6HG "C5'" "C4'" SING N N 8 6HG "C5'" "H5'" SING N N 9 6HG "C5'" "H5''" SING N N 10 6HG "C4'" "O4'" SING N N 11 6HG "C4'" "C3'" SING N N 12 6HG "C4'" "H4'" SING N N 13 6HG "O4'" "C6'" SING N N 14 6HG "C3'" "O3'" SING N N 15 6HG "C3'" "C2'" SING N N 16 6HG "C3'" "H3'" SING N N 17 6HG "O3'" "HO3'" SING N N 18 6HG "C2'" "C1'" SING N N 19 6HG "C2'" "H2'" SING N N 20 6HG "C2'" "H2''" SING N N 21 6HG "C1'" "C6'" SING N N 22 6HG "C1'" N9 SING N N 23 6HG "C1'" "H1'" SING N N 24 6HG "C6'" "H6'1" SING N N 25 6HG "C6'" "H6'2" SING N N 26 6HG N9 C8 SING Y N 27 6HG N9 C4 SING Y N 28 6HG C8 N7 DOUB Y N 29 6HG C8 H8 SING N N 30 6HG N7 C5 SING Y N 31 6HG C5 C6 SING N N 32 6HG C5 C4 DOUB Y N 33 6HG C6 O6 DOUB N N 34 6HG C6 N1 SING N N 35 6HG N1 C2 SING N N 36 6HG N1 H1 SING N N 37 6HG C2 N2 SING N N 38 6HG C2 N3 DOUB N N 39 6HG N2 H21 SING N N 40 6HG N2 H22 SING N N 41 6HG N3 C4 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6HG SMILES ACDLabs 10.04 "O=C2NC(=Nc1n(cnc12)C3CC(O)C(OC3)COP(=O)(O)O)N" 6HG SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3CO[C@H](CO[P](O)(O)=O)[C@@H](O)C3" 6HG SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3CO[CH](CO[P](O)(O)=O)[CH](O)C3" 6HG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](OC3)COP(=O)(O)O)O)N=C(NC2=O)N" 6HG SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3CC(C(OC3)COP(=O)(O)O)O)N=C(NC2=O)N" 6HG InChI InChI 1.03 "InChI=1S/C11H16N5O7P/c12-11-14-9-8(10(18)15-11)13-4-16(9)5-1-6(17)7(22-2-5)3-23-24(19,20)21/h4-7,17H,1-3H2,(H2,19,20,21)(H3,12,14,15,18)/t5-,6-,7+/m0/s1" 6HG InChIKey InChI 1.03 IBBBHRHYCFXRDW-LYFYHCNISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6HG "SYSTEMATIC NAME" ACDLabs 10.04 "2-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-1,5-anhydro-2,3-dideoxy-6-O-phosphono-D-arabino-hexitol" 6HG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5S)-5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxy-oxan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6HG "Create component" 1999-07-23 RCSB 6HG "Modify descriptor" 2011-06-04 RCSB #