data_6HT # _chem_comp.id 6HT _chem_comp.name "1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(THYMIN-1-YL)-6'-O-PHOSPHORYL-D-ARABINO-HEXITOL" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H17 N2 O8 P" _chem_comp.mon_nstd_parent_comp_id DT _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-23 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 336.235 _chem_comp.one_letter_code T _chem_comp.three_letter_code 6HT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EJZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6HT P P P 0 1 N N N -261.937 91.135 -264.255 0.671 0.157 -4.153 P 6HT 1 6HT OP1 O1P O 0 1 N N N -260.785 91.636 -265.037 1.822 0.887 -3.577 OP1 6HT 2 6HT OP2 O2P O 0 1 N N N -261.724 90.147 -263.175 1.196 -0.880 -5.266 OP2 6HT 3 6HT OP3 O3P O 0 1 N Y N -262.717 92.398 -263.636 -0.343 1.206 -4.833 OP3 6HT 4 6HT "O5'" O5* O 0 1 N N N -263.025 90.535 -265.278 -0.091 -0.647 -2.986 "O5'" 6HT 5 6HT "C5'" C5* C 0 1 N N N -264.320 90.120 -264.806 -0.531 0.323 -2.034 "C5'" 6HT 6 6HT "C4'" C4* C 0 1 N N R -265.348 90.079 -265.922 -1.268 -0.379 -0.892 "C4'" 6HT 7 6HT "O4'" O4* O 0 1 N N N -265.483 91.398 -266.491 -0.387 -1.304 -0.257 "O4'" 6HT 8 6HT "C3'" C3* C 0 1 N N S -264.917 89.055 -266.977 -1.744 0.663 0.122 "C3'" 6HT 9 6HT "O3'" O3* O 0 1 N N N -264.996 87.735 -266.437 -2.604 1.602 -0.526 "O3'" 6HT 10 6HT "C2'" C2* C 0 1 N N N -265.792 89.162 -268.218 -2.510 -0.045 1.247 "C2'" 6HT 11 6HT "C1'" C1* C 0 1 N N S -265.823 90.579 -268.764 -1.622 -1.156 1.818 "C1'" 6HT 12 6HT "C6'" C6* C 0 1 N N N -266.323 91.497 -267.652 -1.155 -2.061 0.675 "C6'" 6HT 13 6HT N1 N1 N 0 1 N N N -264.474 90.996 -269.233 -0.458 -0.561 2.479 N1 6HT 14 6HT C2 C2 C 0 1 N N N -264.244 91.005 -270.598 -0.633 0.232 3.551 C2 6HT 15 6HT O2 O2 O 0 1 N N N -265.114 90.705 -271.414 -1.758 0.446 3.960 O2 6HT 16 6HT N3 N3 N 0 1 N N N -262.975 91.376 -270.997 0.417 0.791 4.178 N3 6HT 17 6HT C4 C4 C 0 1 N N N -261.928 91.733 -270.172 1.671 0.559 3.740 C4 6HT 18 6HT O4 O4 O 0 1 N N N -260.834 92.038 -270.643 2.624 1.064 4.306 O4 6HT 19 6HT C5 C5 C 0 1 N N N -262.253 91.700 -268.767 1.870 -0.269 2.610 C5 6HT 20 6HT C5M C5M C 0 1 N N N -261.185 92.071 -267.743 3.261 -0.541 2.097 C5M 6HT 21 6HT C6 C6 C 0 1 N N N -263.483 91.342 -268.346 0.797 -0.818 2.000 C6 6HT 22 6HT HOP2 2HOP H 0 0 N N N -262.463 89.825 -262.672 1.645 -0.359 -5.945 HOP2 6HT 23 6HT HOP3 3HOP H 0 0 N N N -263.456 92.076 -263.133 -1.077 0.690 -5.195 HOP3 6HT 24 6HT "H5'" 1H5* H 0 1 N N N -264.253 89.119 -264.403 -1.203 1.030 -2.520 "H5'" 6HT 25 6HT "H5''" 2H5* H 0 0 N N N -264.645 90.816 -264.020 0.331 0.857 -1.635 "H5''" 6HT 26 6HT "H4'" H4* H 0 1 N N N -266.306 89.771 -265.506 -2.128 -0.915 -1.292 "H4'" 6HT 27 6HT "H3'" H3* H 0 1 N N N -263.884 89.259 -267.259 -0.883 1.184 0.540 "H3'" 6HT 28 6HT "HO3'" HO3* H 0 0 N Y N -264.728 87.100 -267.091 -2.880 2.239 0.147 "HO3'" 6HT 29 6HT "H2'" 1H2* H 0 1 N N N -265.396 88.495 -268.988 -3.427 -0.479 0.848 "H2'" 6HT 30 6HT "H2''" 2H2* H 0 0 N N N -266.811 88.866 -267.951 -2.753 0.670 2.031 "H2''" 6HT 31 6HT "H1'" H1* H 0 1 N N N -266.521 90.621 -269.602 -2.190 -1.743 2.539 "H1'" 6HT 32 6HT "H6'1" 1H6* H 0 0 N N N -266.327 92.527 -268.005 -0.543 -2.867 1.079 "H6'1" 6HT 33 6HT "H6'2" 2H6* H 0 0 N N N -267.341 91.221 -267.387 -2.023 -2.484 0.171 "H6'2" 6HT 34 6HT H3 H3 H 0 1 N N N -262.796 91.391 -271.989 0.273 1.361 4.950 H3 6HT 35 6HT H71 1H5M H 0 1 N N N -261.524 92.923 -267.156 3.986 -0.014 2.717 H71 6HT 36 6HT H72 2H5M H 0 1 N N N -260.261 92.330 -268.258 3.460 -1.612 2.137 H72 6HT 37 6HT H73 3H5M H 0 1 N N N -261.006 91.224 -267.081 3.343 -0.195 1.067 H73 6HT 38 6HT H6 H6 H 0 1 N N N -263.696 91.335 -267.277 0.930 -1.456 1.139 H6 6HT 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6HT P OP1 DOUB N N 1 6HT P OP2 SING N N 2 6HT P OP3 SING N N 3 6HT P "O5'" SING N N 4 6HT OP2 HOP2 SING N N 5 6HT OP3 HOP3 SING N N 6 6HT "O5'" "C5'" SING N N 7 6HT "C5'" "C4'" SING N N 8 6HT "C5'" "H5'" SING N N 9 6HT "C5'" "H5''" SING N N 10 6HT "C4'" "O4'" SING N N 11 6HT "C4'" "C3'" SING N N 12 6HT "C4'" "H4'" SING N N 13 6HT "O4'" "C6'" SING N N 14 6HT "C3'" "O3'" SING N N 15 6HT "C3'" "C2'" SING N N 16 6HT "C3'" "H3'" SING N N 17 6HT "O3'" "HO3'" SING N N 18 6HT "C2'" "C1'" SING N N 19 6HT "C2'" "H2'" SING N N 20 6HT "C2'" "H2''" SING N N 21 6HT "C1'" "C6'" SING N N 22 6HT "C1'" N1 SING N N 23 6HT "C1'" "H1'" SING N N 24 6HT "C6'" "H6'1" SING N N 25 6HT "C6'" "H6'2" SING N N 26 6HT N1 C2 SING N N 27 6HT N1 C6 SING N N 28 6HT C2 O2 DOUB N N 29 6HT C2 N3 SING N N 30 6HT N3 C4 SING N N 31 6HT N3 H3 SING N N 32 6HT C4 O4 DOUB N N 33 6HT C4 C5 SING N N 34 6HT C5 C5M SING N N 35 6HT C5 C6 DOUB N N 36 6HT C5M H71 SING N N 37 6HT C5M H72 SING N N 38 6HT C5M H73 SING N N 39 6HT C6 H6 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6HT SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1C)C2CC(O)C(OC2)COP(=O)(O)O" 6HT SMILES_CANONICAL CACTVS 3.341 "CC1=CN([C@@H]2CO[C@H](CO[P](O)(O)=O)[C@@H](O)C2)C(=O)NC1=O" 6HT SMILES CACTVS 3.341 "CC1=CN([CH]2CO[CH](CO[P](O)(O)=O)[CH](O)C2)C(=O)NC1=O" 6HT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](OC2)COP(=O)(O)O)O" 6HT SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2CC(C(OC2)COP(=O)(O)O)O" 6HT InChI InChI 1.03 "InChI=1S/C11H17N2O8P/c1-6-3-13(11(16)12-10(6)15)7-2-8(14)9(20-4-7)5-21-22(17,18)19/h3,7-9,14H,2,4-5H2,1H3,(H,12,15,16)(H2,17,18,19)/t7-,8-,9+/m0/s1" 6HT InChIKey InChI 1.03 CCUHDSVZYOGFIW-XHNCKOQMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6HT "SYSTEMATIC NAME" ACDLabs 10.04 "1,5-anhydro-2,3-dideoxy-2-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-6-O-phosphono-D-arabino-hexitol" 6HT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5S)-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6HT "Create component" 1999-07-23 RCSB 6HT "Modify descriptor" 2011-06-04 RCSB #