data_6IA # _chem_comp.id 6IA _chem_comp.name "N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C15 H24 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-01-19 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 417.354 _chem_comp.one_letter_code A _chem_comp.three_letter_code 6IA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6IA OP3 O3P O 0 1 N Y N ? ? ? 6.100 2.945 1.280 OP3 6IA 1 6IA P P P 0 1 N N N -27.025 2.360 4.738 5.929 1.929 0.043 P 6IA 2 6IA OP1 O1P O 0 1 N N N -27.689 1.741 5.917 5.446 2.671 -1.143 OP1 6IA 3 6IA OP2 O2P O 0 1 N N N -25.755 1.654 4.372 7.349 1.247 -0.292 OP2 6IA 4 6IA "O5'" "O5'" O 0 1 N N N -26.809 3.933 4.849 4.864 0.785 0.431 "O5'" 6IA 5 6IA "C5'" "C5'" C 0 1 N N N -27.432 4.818 3.883 4.417 -0.208 -0.494 "C5'" 6IA 6 6IA "C4'" "C4'" C 0 1 N N R -28.066 5.944 4.668 3.412 -1.132 0.197 "C4'" 6IA 7 6IA "O4'" "O4'" O 0 1 N N N -29.438 5.687 4.876 2.219 -0.401 0.523 "O4'" 6IA 8 6IA "C3'" "C3'" C 0 1 N N S -27.490 6.179 6.059 3.005 -2.271 -0.759 "C3'" 6IA 9 6IA "O3'" "O3'" O 0 1 N N N -26.274 6.931 6.049 3.345 -3.540 -0.198 "O3'" 6IA 10 6IA "C2'" "C2'" C 0 1 N N R -28.638 6.918 6.744 1.469 -2.128 -0.885 "C2'" 6IA 11 6IA "O2'" "O2'" O 0 1 N N N -28.545 8.283 6.363 0.835 -3.409 -0.868 "O2'" 6IA 12 6IA "C1'" "C1'" C 0 1 N N R -29.860 6.255 6.132 1.112 -1.317 0.386 "C1'" 6IA 13 6IA N9 N9 N 0 1 Y N N -30.358 5.212 7.047 -0.144 -0.586 0.196 N9 6IA 14 6IA C8 C8 C 0 1 Y N N -30.271 3.851 6.910 -0.273 0.680 -0.291 C8 6IA 15 6IA N7 N7 N 0 1 Y N N -30.830 3.182 7.887 -1.530 1.017 -0.326 N7 6IA 16 6IA C5 C5 C 0 1 Y N N -31.329 4.175 8.724 -2.284 -0.010 0.136 C5 6IA 17 6IA C6 C6 C 0 1 Y N N -32.039 4.102 9.946 -3.661 -0.218 0.323 C6 6IA 18 6IA N6 N6 N 0 1 N N N -32.372 2.967 10.546 -4.577 0.771 0.006 N6 6IA 19 6IA N1 N1 N 0 1 Y N N -32.373 5.308 10.495 -4.065 -1.385 0.813 N1 6IA 20 6IA C2 C2 C 0 1 Y N N -32.040 6.484 9.896 -3.198 -2.335 1.118 C2 6IA 21 6IA N3 N3 N 0 1 Y N N -31.376 6.622 8.750 -1.901 -2.184 0.960 N3 6IA 22 6IA C4 C4 C 0 1 Y N N -31.051 5.427 8.216 -1.404 -1.052 0.470 C4 6IA 23 6IA C12 C12 C 0 1 N N N ? ? ? -6.008 0.536 0.208 C12 6IA 24 6IA C13 C13 C 0 1 N N N ? ? ? -6.794 1.777 -0.219 C13 6IA 25 6IA C14 C14 C 0 1 N N N ? ? ? -8.290 1.532 -0.007 C14 6IA 26 6IA C15 C15 C 0 1 N N N ? ? ? -9.065 2.814 -0.315 C15 6IA 27 6IA C16 C16 C 0 1 N N N ? ? ? -8.760 0.414 -0.940 C16 6IA 28 6IA HOP3 HOP3 H 0 0 N N N ? ? ? 6.728 3.661 1.116 HOP3 6IA 29 6IA HOP2 HOP2 H 0 0 N N N -25.734 1.505 3.434 7.726 0.743 0.442 HOP2 6IA 30 6IA "H5'" "H5'1" H 0 1 N N N -26.679 5.214 3.185 3.939 0.277 -1.345 "H5'" 6IA 31 6IA "H5''" "H5'2" H 0 0 N N N -28.185 4.282 3.286 5.269 -0.792 -0.840 "H5''" 6IA 32 6IA "H4'" "H4'" H 0 1 N N N -27.866 6.830 4.048 3.852 -1.546 1.104 "H4'" 6IA 33 6IA "H3'" "H3'" H 0 1 N N N -27.188 5.253 6.569 3.483 -2.144 -1.730 "H3'" 6IA 34 6IA "HO3'" H3T H 0 0 N Y N -26.012 7.098 5.151 3.111 -4.293 -0.757 "HO3'" 6IA 35 6IA "H2'" "H2'" H 0 1 N N N -28.650 6.878 7.843 1.202 -1.577 -1.787 "H2'" 6IA 36 6IA "HO2'" "HO'2" H 0 0 N N N -28.524 8.829 7.140 1.097 -3.988 -1.597 "HO2'" 6IA 37 6IA "H1'" "H1'" H 0 1 N N N -30.678 6.972 5.968 1.047 -1.974 1.254 "H1'" 6IA 38 6IA H8 H8 H 0 1 N N N -29.785 3.373 6.072 0.546 1.312 -0.602 H8 6IA 39 6IA HN6 HN6 H 0 1 N N N -32.663 2.897 11.500 -4.270 1.619 -0.351 HN6 6IA 40 6IA H2 H2 H 0 1 N N N -32.343 7.391 10.398 -3.569 -3.269 1.513 H2 6IA 41 6IA H121 H121 H 0 0 N N N ? ? ? -6.325 -0.318 -0.391 H121 6IA 42 6IA H122 H122 H 0 0 N N N ? ? ? -6.198 0.331 1.262 H122 6IA 43 6IA H131 H131 H 0 0 N N N ? ? ? -6.478 2.631 0.380 H131 6IA 44 6IA H132 H132 H 0 0 N N N ? ? ? -6.605 1.982 -1.272 H132 6IA 45 6IA H14 H14 H 0 1 N N N ? ? ? -8.467 1.240 1.028 H14 6IA 46 6IA H151 H151 H 0 0 N N N ? ? ? -8.888 3.106 -1.350 H151 6IA 47 6IA H152 H152 H 0 0 N N N ? ? ? -10.131 2.639 -0.165 H152 6IA 48 6IA H153 H153 H 0 0 N N N ? ? ? -8.730 3.610 0.349 H153 6IA 49 6IA H161 H161 H 0 0 N N N ? ? ? -9.825 0.240 -0.789 H161 6IA 50 6IA H162 H162 H 0 0 N N N ? ? ? -8.583 0.706 -1.975 H162 6IA 51 6IA H163 H163 H 0 0 N N N ? ? ? -8.207 -0.499 -0.721 H163 6IA 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6IA OP3 P SING N N 1 6IA OP3 HOP3 SING N N 2 6IA P OP1 DOUB N N 3 6IA P OP2 SING N N 4 6IA P "O5'" SING N N 5 6IA OP2 HOP2 SING N N 6 6IA "O5'" "C5'" SING N N 7 6IA "C5'" "C4'" SING N N 8 6IA "C5'" "H5'" SING N N 9 6IA "C5'" "H5''" SING N N 10 6IA "C4'" "O4'" SING N N 11 6IA "C4'" "C3'" SING N N 12 6IA "C4'" "H4'" SING N N 13 6IA "O4'" "C1'" SING N N 14 6IA "C3'" "O3'" SING N N 15 6IA "C3'" "C2'" SING N N 16 6IA "C3'" "H3'" SING N N 17 6IA "O3'" "HO3'" SING N N 18 6IA "C2'" "O2'" SING N N 19 6IA "C2'" "C1'" SING N N 20 6IA "C2'" "H2'" SING N N 21 6IA "O2'" "HO2'" SING N N 22 6IA "C1'" N9 SING N N 23 6IA "C1'" "H1'" SING N N 24 6IA N9 C8 SING Y N 25 6IA N9 C4 SING Y N 26 6IA C8 N7 DOUB Y N 27 6IA C8 H8 SING N N 28 6IA N7 C5 SING Y N 29 6IA C5 C6 SING Y N 30 6IA C5 C4 DOUB Y N 31 6IA C6 N6 SING N N 32 6IA C6 N1 DOUB Y N 33 6IA N6 C12 SING N N 34 6IA N6 HN6 SING N N 35 6IA N1 C2 SING Y N 36 6IA C2 N3 DOUB Y N 37 6IA C2 H2 SING N N 38 6IA N3 C4 SING Y N 39 6IA C12 C13 SING N N 40 6IA C12 H121 SING N N 41 6IA C12 H122 SING N N 42 6IA C13 C14 SING N N 43 6IA C13 H131 SING N N 44 6IA C13 H132 SING N N 45 6IA C14 C15 SING N N 46 6IA C14 C16 SING N N 47 6IA C14 H14 SING N N 48 6IA C15 H151 SING N N 49 6IA C15 H152 SING N N 50 6IA C15 H153 SING N N 51 6IA C16 H161 SING N N 52 6IA C16 H162 SING N N 53 6IA C16 H163 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6IA SMILES ACDLabs 10.04 "O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)NCCC(C)C)C(O)C3O" 6IA SMILES_CANONICAL CACTVS 3.341 "CC(C)CCNc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O" 6IA SMILES CACTVS 3.341 "CC(C)CCNc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O" 6IA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)CCNc1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O" 6IA SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)CCNc1c2c(ncn1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O" 6IA InChI InChI 1.03 "InChI=1S/C15H24N5O7P/c1-8(2)3-4-16-13-10-14(18-6-17-13)20(7-19-10)15-12(22)11(21)9(27-15)5-26-28(23,24)25/h6-9,11-12,15,21-22H,3-5H2,1-2H3,(H,16,17,18)(H2,23,24,25)/t9-,11-,12-,15-/m1/s1" 6IA InChIKey InChI 1.03 GZJXCRHEMLAMRA-SDBHATRESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6IA "SYSTEMATIC NAME" ACDLabs 10.04 ;N-(3-methylbutyl)adenosine 5'-(dihydrogen phosphate) ; 6IA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-3,4-dihydroxy-5-[6-(3-methylbutylamino)purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6IA "Create component" 2001-01-19 RCSB 6IA "Modify descriptor" 2011-06-04 RCSB #